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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:277281..280690 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G00830.1 vs.
Match: EWM29617.1 (Bestrophin-like protein [Nannochloropsis gaditana]) HSP 1 Score: 526.2 bits (1354), Expect = 1.200e-145 Identity = 279/416 (67.07%), Postives = 315/416 (75.72%), Query Frame = 0
Query: 34 IYRRIGGFFPSFPTTPPLLLLLFLLPFCLSLHRAIPSAFLGPSHTCFVARHRSPCPTPPFHNFHVVTAATSLPTRRTHTRARGDATFLLDPPQRYQSSDWVENLQSLLDSRIAKRISGHLWFNTAWAGAVTALFEFMPQWHIDAYISPLPHQLMSSALGLLLVFRTNAAYDRFWEARKVWGSVTNNCRNLARTGRIALDRKYHARFSMLVISFSVTLRAHLQRVVVSTELEALLPSWEADQVRMNSCPPALIAMKLTHLINEAVGKNEQRSDFYALYLEQLVGELINCLGMAERILLTPVPASYSRHTSRFLSLYTFTLPFVLVHELEYFTVPAIGAICWTLFSIEEIGHLIEEPFSATSKQLPLRRMTTTIARDVRSLLQTKDGMDFDTLLDEDLLSTEDRILAENAPQSTKVQS 450
+ RR S P +L+ L+ FCL + A A + P H + R P HN H + RA+ T LLDPPQRY+SSDW ENL+SL DSRI KRISGHL FNTAWA VT ++E MPQWHI + ISP+PHQLMS+ALGLLLVFRTNAAYDRFWEARKVWGSVTN CRNLARTGRIALD++YHARFSML+I+F+VTLRAHLQR +VSTELE LLPSWEADQVRM++CPPAL+ MKLT+LINEAV NE RSDFYALYLEQLVG+L+NCLGMAERILLTPVPASYSRHTSRFLSLYT TLPFVLVH+LE FT P +G +CW LFSIEEIGHLIEEPF A++KQLPL MT TIARDV+ LL K G D LDE+LLS +D LAEN PQS S
Sbjct: 62 VRRRRRRAMSSVPPRGQVLVAAHLVFFCL-VSCASSIALIFPFHAASSSFTRQHVMFRP-HNCHSNPSVNHFVNHIGCRRAKSHVTALLDPPQRYKSSDWAENLRSLFDSRIVKRISGHLLFNTAWATGVTGVYESMPQWHIGSDISPVPHQLMSTALGLLLVFRTNAAYDRFWEARKVWGSVTNICRNLARTGRIALDQRYHARFSMLIIAFAVTLRAHLQRNIVSTELETLLPSWEADQVRMDTCPPALVCMKLTYLINEAVSHNEARSDFYALYLEQLVGDLVNCLGMAERILLTPVPASYSRHTSRFLSLYTLTLPFVLVHQLEIFTAPVLGIVCWGLFSIEEIGHLIEEPFCASTKQLPLISMTETIARDVKHLLGLKAGFDVTFPLDENLLSPDDWKLAENGPQSALASS 475
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G00830.1 ID=NO03G00830.1|Name=NO03G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2892bp ATGACAACAACAGGAACATCAGCCATGGATAGTGCAGACACGACGGCTCA CGCAAGAGCCAGGAGAAGAAAATCACGCAGCACTCATGGCAGCAGCAGCA TTTATCGGAGAATAGGAGGTTTCTTCCCCTCCTTTCCTACCACCCCTCCC CTTCTGCTCCTCCTCTTCCTCCTCCCCTTCTGCCTTTCCCTCCATCGTGC CATCCCTTCAGCCTTCCTTGGCCCCAGCCACACTTGTTTCGTGGCTCGCC ACCGCTCTCCATGTCCAACACCTCCCTTTCATAACTTTCACGTCGTCACT GCCGCCACCTCCCTCCCCACACGGCGCACCCACACCCGCGCCCGCGGCGA CGCTACCTTCCTCCTCGATCCGCCCCAGCGATACCAATCTTCGGATTGGG TCGAAAATTTGCAGTCTTTGCTCGACTCTCGGATTGCCAAGCGAATATCA GGTCACCTGTGGTTCAATACAGCGTGGGCAGGGGCGGTAACGGCGCTGTT TGAATTCATGCCCCAGTGGCACATTGATGCTTATATTTCCCCTCTTCCGC ATCAGCTGATGTCCTCGGCTCTGGGGCTGTTGTTGGTGTTTCGGACCAAC GCCGCCTACGACCGATTTTGGGAAGCTCGAAAAGTGTGGGGCAGCGTCAC CAATAACTGCAGGAATTTGGCGCGAACAGGCCGCATAGCCCTTGATCGGA AATACCACGCCCGATTCTCCATGTTGGTCATCTCCTTCTCCGTCACCCTG CGGGCACACCTGCAGAGGGTTGTGGTGTCCACAGAATTGGAAGCACTGCT TCCTTCGTGGGAAGCGGACCAGGTGAGGATGAATTCCTGCCCGCCTGCAC TGATTGCCATGAAGTTAACGCACCTGATCAACGAAGCCGTGGGGAAGAAC GAGCAGCGGTCGGACTTCTACGCTCTTTATCTAGAGCAACTCGTGGGAGA GCTCATAAATTGCCTAGGCATGGCAGAGCGTATCCTCTTGACGCCTGTTC CGGCCTCCTACTCTAGACACACCTCTCGATTCCTCTCACTCTACACCTTC ACGCTCCCCTTCGTCCTCGTCCATGAGCTGGAGTATTTTACCGTTCCCGC CATTGGCGCGATCTGCTGGACGCTCTTTTCAATCGAGGAAATTGGACACC TCATCGAAGAGCCTTTCTCCGCCACTAGCAAGCAACTTCCCCTCAGGCGC ATGACCACCACCATCGCCCGCGACGTCCGCTCTCTGCTCCAAACCAAGGA CGGGATGGACTTTGACACCCTTCTTGACGAAGACTTGCTCTCAACGGAAG ACAGAATCCTGGCCGAAAACGCCCCTCAATCGACCAAAGTGCAGTCCTTC GTTCCTTCCCTCGCGGCCCCTTCGATCTGGGGTCCTGGGAAAGGGGATGA AACGAAGGAAGACATGGAGGGGGACGAGCAGGGGGGGGAAGCGAAGAGGA GGGGGTTGGTGGGAGGGAGGACATTTTTTGGAAAAAAAAGCAATGGGCCA GCCACGGCGGCCTCGGCGGCGGCGACACTGCAGTCGACTGAGAGGATGAA TATATAACGTGGTGGTGAATGAAAAATGATGGGAAGTGAGGGGAGGAAGA TGCAAGAGGGATTGAGGAAGAGGGAGCGTAGCGACTTAGTGATTGACATG TGATAAAGAAACGAGGAACAAGGCGTGTATGTGCGTGCGTGCGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGAAATTACACAGCCA GCGAGCACTAAACACACAACTAGCAAACAAGAAAAGGAAACGATTCATCG TCATAATCGACGGGAGAAATCAACCTTAAAAAAGACCAAAGAAAGGACGC ATATATGAATAAATAGAGAGCTTGTTTGGTTGTGTGGGAATGGATAAGGA GCTGCACGTTCTGGACCTATCTCCTCCACAGACGATGCTGTGAAGAAGAA CTAGAAAATTTGTGCTTAGTCTTGACCCTCGATCTTCCTTCAATAGGATC TATATACATATACACATTTGTTTCATCATGTGTGGGTGCAGGCCTGCTTA AAGTTCTGAGTCATCTCCTCTTCATTTGGTCGCCTTCACTGCGTACGTCT TCGCACGCCACAGCGGCCCCATTCACCTGTCCTGGCCTTCCATACCCACA GACCACTTCGTTTCGATGTCACAGCTGATTCCTTGACGCCTTTACTGCGA AAGTCTTGTCGGGCGGCTCCTACTTATCCTTGCTTACATATTCGCTTACT CCTCAGGAGAAGATGGAGGAAGGGAGGGAGAAGAGGAGGAGAAAAGGGGA AATGAGGCGATGGGCTCAAAGGAGGAAGTAAAGGAGAGGAGGAAGAGATT GAGTATGAGGAGGTTGGAGAGATTAAGGTCAGTGAAGGAGCTGGAGACTG CGAGGGCGAGGTTTTGATCCTGGGAATGAGCGGTGATGTGTCCGTTGATT TTTGCAGTTTCCGGGAAGGGAAGGAGGGAGAAAGAGGGTAAACTGGACTG CGGGAAGGGAGACAAGAAAATGCAGTAGACCACATTGATTTGAGTGCACT ATGTGATGTTCGGACGAGTAGCTCTTAGTTCACTTCACTTACCATTCTTT CTGTTCTGTGATTGTACACGAAGCGCAGGCATTACTTCGTCAGGGTATGG ATTTCATGTAAAAAATTGCAGGCACTACATCACCAGAGCGTGAAATGTGA TGTGCGATATTATAGAGTAGAGACGATGCGAACGATTGACACCAATTAGC AAATGAATCCGTGTCCCTGGACACGTCCAGACCCTCTTTCGGGACAAGTT GTCCAACGGTTCACGTTGTTGCGCAAAATATTTGATTCTAAC back to topprotein sequence of NO03G00830.1 >NO03G00830.1-protein ID=NO03G00830.1-protein|Name=NO03G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=519bp MTTTGTSAMDSADTTAHARARRRKSRSTHGSSSIYRRIGGFFPSFPTTPP LLLLLFLLPFCLSLHRAIPSAFLGPSHTCFVARHRSPCPTPPFHNFHVVT AATSLPTRRTHTRARGDATFLLDPPQRYQSSDWVENLQSLLDSRIAKRIS GHLWFNTAWAGAVTALFEFMPQWHIDAYISPLPHQLMSSALGLLLVFRTN AAYDRFWEARKVWGSVTNNCRNLARTGRIALDRKYHARFSMLVISFSVTL RAHLQRVVVSTELEALLPSWEADQVRMNSCPPALIAMKLTHLINEAVGKN EQRSDFYALYLEQLVGELINCLGMAERILLTPVPASYSRHTSRFLSLYTF TLPFVLVHELEYFTVPAIGAICWTLFSIEEIGHLIEEPFSATSKQLPLRR MTTTIARDVRSLLQTKDGMDFDTLLDEDLLSTEDRILAENAPQSTKVQSF VPSLAAPSIWGPGKGDETKEDMEGDEQGGEAKRRGLVGGRTFFGKKSNGP ATAASAAATLQSTERMNI* back to topmRNA from alignment at chr3:277281..280690+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G00830.1 ID=NO03G00830.1|Name=NO03G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=3410bp|location=Sequence derived from alignment at chr3:277281..280690+ (Nannochloropsis oceanica) ATGACAACAACAGGAACATCAGCCATGGATAGTGCAGACACGACGGCTCA
CGCAAGAGCCAGGAGAAGAAAATCACGCAGCACTCATGGCAGCAGCAGCA
TTTATCGGAGAATAGGAGGTTTCTTCCCCTCCTTTCCTACCACCCCTCCC
CTTCTGCTCCTCCTCTTCCTCCTCCCCTTCTGCCTTTCCCTCCATCGTGC
CATCCCTTCAGCCTTCCTTGGCCCCAGCCACACTTGTTTCGTGGCTCGCC
ACCGCTCTCCATGTCCAACACCTCCCTTTCATAACTTTCACGTCGTCACT
GCCGCCACCTCCCTCCCCACACGGCGCACCCACACCCGCGCCCGCGGCGA
CGCTACCTTCCTCCTCGATCCGCCCCAGCGATACCAATCTTCGGATTGGG
TCGAAAATTTGCAGTCTTTGCTCGACTCTCGGATTGCCAAGCGAATATCA
GGTCACCTGTGGTTCAATACAGCGTGGGCAGGGGCGGTAACGGCGCTGTT
TGAATTCATGCCCCAGTGGCACATTGATGCTTATATTTCCCCTCTTCCGC
ATCAGCTGATGTCCTCGGCTCTGGGGCTGTTGTTGGTGTTTCGGACCAAG
TACGTGGGGCTGGAGGGAGGGAAAGTGGGGGGAAAAGGGCGCACAGTACA
GGGGAAGGTAGACGGACCCCATAAATCATACTCACCATTCTCCCATCCAC
TCTCTTACCCTCTTTCCCTCCGTCCCCCAATGCCTTTATCTCCAGCGCCG
CCTACGACCGATTTTGGGAAGCTCGAAAAGTGTGGGGCAGCGTCACCAAT
AACTGCAGGAATTTGGCGCGAACAGGCCGCATAGCCCTTGATCGGAAATA
CCACGCCCGATTCTCCATGTTGGTCATCTCCTTCTCCGTCACCCTGCGGG
CACACCTGCAGAGGGTTGTGGTGTCCACAGAATTGGAAGCACTGCTTCCT
TCGTGGGAAGCGGACCAGGTGAGGATGAATTCCTGCCCGCCTGCACTGAT
TGCCATGAAGTTAACGCACCTGATCAACGAAGCCGTGGGGAAGAACGAGC
AGCGGTCGGACTTCTACGCTCTTTATCTAGAGCAACTCGTGGGAGAGCTC
ATAAATTGCCTAGGTGAGCCCTCCTGCCTGCCCTTCTCTTCTTCCTTCTA
TTTCCCCATCCGTCCGTCGCTCCGTCCCTCCCTCCCTCCCTGCCTCCCTC
CGGGTTGTTTCGCCTCGGTCCTTTCTTCCCAGTTGGTCGAAACTGATAAT
ATTAAGAGCACATCGGACGATGTTTGGACCCTTTCACCCTCTCTCAATCT
CCCTCCTTCCCTCCCTCTCTCCCTCCCAGGCATGGCAGAGCGTATCCTCT
TGACGCCTGTTCCGGCCTCCTACTCTAGACACACCTCTCGATTCCTCTCA
CTCTACACCTTCACGCTCCCCTTCGTCCTCGTCCATGAGCTGGAGTATTT
TACCGTTCCCGCCATTGGCGCGATCTGCTGGACGCTCTTTTCAATGTAAT
GGAGGGAGGGAGGGAGGGAGGGAGGGACAGAGGAAGTGAAGGCGGGGCAG
GGAATTTTCCCCCGTAACGCGAAAGATGAGCGGACACTTATTCTCCCTCC
CTCCCTCCGTCCCTTTCTGTCACCCTCTCTCCCTTTCCTCCTCCCTCCCA
GCGAGGAAATTGGACACCTCATCGAAGAGCCTTTCTCCGCCACTAGCAAG
CAACTTCCCCTCAGGCGCATGACCACCACCATCGCCCGCGACGTCCGCTC
TCTGCTCCAAACCAAGGACGGGATGGACTTTGACACCCTTCTTGACGAAG
ACTTGCTCTCAACGGAAGACAGAATCCTGGCCGAAAACGCCCCTCAATCG
ACCAAAGTGCAGTCCTTCGTTCCTTCCCTCGCGGCCCCTTCGATCTGGGG
TCCTGGGAAAGGGGATGAAACGAAGGAAGACATGGAGGGGGACGAGCAGG
GGGGGGAAGCGAAGAGGAGGGGGTTGGTGGGAGGGAGGACATTTTTTGGA
AAAAAAAGCAATGGGCCAGCCACGGCGGCCTCGGCGGCGGCGACACTGCA
GTCGACTGAGAGGATGAATATATAACGTGGTGGTGAATGAAAAATGATGG
GAAGTGAGGGGAGGAAGATGCAAGAGGGATTGAGGAAGAGGGAGCGTAGC
GACTTAGTGATTGACATGTGATAAAGAAACGAGGAACAAGGCGTGTATGT
GCGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GAAGAAATTACACAGCCAGCGAGCACTAAACACACAACTAGCAAACAAGA
AAAGGAAACGATTCATCGTCATAATCGACGGGAGAAATCAACCTTAAAAA
AGACCAAAGAAAGGACGCATATATGAATAAATAGAGAGCTTGTTTGGTTG
TGTGGGAATGGATAAGGAGCTGCACGTTCTGGACCTATCTCCTCCACAGA
CGATGCTGTGAAGAAGAACTAGAAAATTTGTGCTTAGTCTTGACCCTCGA
TCTTCCTTCAATAGGATCTATATACATATACACATTTGTTTCATCATGTG
TGGGTGCAGGCCTGCTTAAAGTTCTGAGTCATCTCCTCTTCATTTGGTCG
CCTTCACTGCGTACGTCTTCGCACGCCACAGCGGCCCCATTCACCTGTCC
TGGCCTTCCATACCCACAGACCACTTCGTTTCGATGTCACAGCTGATTCC
TTGACGCCTTTACTGCGAAAGTCTTGTCGGGCGGCTCCTACTTATCCTTG
CTTACATATTCGCTTACTCCTCAGGAGAAGATGGAGGAAGGGAGGGAGAA
GAGGAGGAGAAAAGGGGAAATGAGGCGATGGGCTCAAAGGAGGAAGTAAA
GGAGAGGAGGAAGAGATTGAGTATGAGGAGGTTGGAGAGATTAAGGTCAG
TGAAGGAGCTGGAGACTGCGAGGGCGAGGTTTTGATCCTGGGAATGAGCG
GTGATGTGTCCGTTGATTTTTGCAGTTTCCGGGAAGGGAAGGAGGGAGAA
AGAGGGTAAACTGGACTGCGGGAAGGGAGACAAGAAAATGCAGTAGACCA
CATTGATTTGAGTGCACTATGTGATGTTCGGACGAGTAGCTCTTAGTTCA
CTTCACTTACCATTCTTTCTGTTCTGTGATTGTACACGAAGCGCAGGCAT
TACTTCGTCAGGGTATGGATTTCATGTAAAAAATTGCAGGCACTACATCA
CCAGAGCGTGAAATGTGATGTGCGATATTATAGAGTAGAGACGATGCGAA
CGATTGACACCAATTAGCAAATGAATCCGTGTCCCTGGACACGTCCAGAC
CCTCTTTCGGGACAAGTTGTCCAACGGTTCACGTTGTTGCGCAAAATATT
TGATTCTAAC back to topCoding sequence (CDS) from alignment at chr3:277281..280690+ >NO03G00830.1 ID=NO03G00830.1|Name=NO03G00830.1|organism=Nannochloropsis oceanica|type=CDS|length=1557bp|location=Sequence derived from alignment at chr3:277281..280690+ (Nannochloropsis oceanica) ATGACAACAACAGGAACATCAGCCATGGATAGTGCAGACACGACGGCTCA CGCAAGAGCCAGGAGAAGAAAATCACGCAGCACTCATGGCAGCAGCAGCA TTTATCGGAGAATAGGAGGTTTCTTCCCCTCCTTTCCTACCACCCCTCCC CTTCTGCTCCTCCTCTTCCTCCTCCCCTTCTGCCTTTCCCTCCATCGTGC CATCCCTTCAGCCTTCCTTGGCCCCAGCCACACTTGTTTCGTGGCTCGCC ACCGCTCTCCATGTCCAACACCTCCCTTTCATAACTTTCACGTCGTCACT GCCGCCACCTCCCTCCCCACACGGCGCACCCACACCCGCGCCCGCGGCGA CGCTACCTTCCTCCTCGATCCGCCCCAGCGATACCAATCTTCGGATTGGG TCGAAAATTTGCAGTCTTTGCTCGACTCTCGGATTGCCAAGCGAATATCA GGTCACCTGTGGTTCAATACAGCGTGGGCAGGGGCGGTAACGGCGCTGTT TGAATTCATGCCCCAGTGGCACATTGATGCTTATATTTCCCCTCTTCCGC ATCAGCTGATGTCCTCGGCTCTGGGGCTGTTGTTGGTGTTTCGGACCAAC GCCGCCTACGACCGATTTTGGGAAGCTCGAAAAGTGTGGGGCAGCGTCAC CAATAACTGCAGGAATTTGGCGCGAACAGGCCGCATAGCCCTTGATCGGA AATACCACGCCCGATTCTCCATGTTGGTCATCTCCTTCTCCGTCACCCTG CGGGCACACCTGCAGAGGGTTGTGGTGTCCACAGAATTGGAAGCACTGCT TCCTTCGTGGGAAGCGGACCAGGTGAGGATGAATTCCTGCCCGCCTGCAC TGATTGCCATGAAGTTAACGCACCTGATCAACGAAGCCGTGGGGAAGAAC GAGCAGCGGTCGGACTTCTACGCTCTTTATCTAGAGCAACTCGTGGGAGA GCTCATAAATTGCCTAGGCATGGCAGAGCGTATCCTCTTGACGCCTGTTC CGGCCTCCTACTCTAGACACACCTCTCGATTCCTCTCACTCTACACCTTC ACGCTCCCCTTCGTCCTCGTCCATGAGCTGGAGTATTTTACCGTTCCCGC CATTGGCGCGATCTGCTGGACGCTCTTTTCAATCGAGGAAATTGGACACC TCATCGAAGAGCCTTTCTCCGCCACTAGCAAGCAACTTCCCCTCAGGCGC ATGACCACCACCATCGCCCGCGACGTCCGCTCTCTGCTCCAAACCAAGGA CGGGATGGACTTTGACACCCTTCTTGACGAAGACTTGCTCTCAACGGAAG ACAGAATCCTGGCCGAAAACGCCCCTCAATCGACCAAAGTGCAGTCCTTC GTTCCTTCCCTCGCGGCCCCTTCGATCTGGGGTCCTGGGAAAGGGGATGA AACGAAGGAAGACATGGAGGGGGACGAGCAGGGGGGGGAAGCGAAGAGGA GGGGGTTGGTGGGAGGGAGGACATTTTTTGGAAAAAAAAGCAATGGGCCA GCCACGGCGGCCTCGGCGGCGGCGACACTGCAGTCGACTGAGAGGATGAA TATATAA back to top
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