NO03G00670.2, NO03G00670.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00670.2
Unique NameNO03G00670.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2997
Alignment locationchr3:213615..216897 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:213615..216897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00670.2 vs.
Match: EWM30014.1 (hypothetical protein Naga_100802g4 [Nannochloropsis gaditana])

HSP 1 Score: 119.4 bits (298), Expect = 1.200e-23
Identity = 96/195 (49.23%), Postives = 118/195 (60.51%), Query Frame = 0 
Query:    1 MPFPCTAARSLLPRFVSG----STTTTSSSPALAAAVRASPFST---MSTTSPSSSSSSSLDSFISSPPSCSSSSPNSVTGSITAMSIRCYSSVSCRATAARLMTSSSSSSSSSSSSSPPSGFWGGLPPGVTPHLTDNDSSPSSSVPLLPPRQVPDAVLRFTTVAYLDSSAYIPYPHKDGIDARAFTTNPANFKV 189
            MP+P TA + LLPR  +        T  S+   A    ASP ST   +  TSP   S +S  S  +     S    ++V G+ T +  R ++S +    A  L +++SSSSSSSSSSS  S  WGGL  G+ P L +  SSPSS VPLLP RQVPD  LR TTV+Y+DSS YIP+PHKDGIDARAF TNPANFKV
Sbjct:    1 MPYPRTATKCLLPRASAAVGMYEKVTRRSTSQAAIGTAASPPSTPTFIKKTSPILPSVTSPPSIEARYTRSSPRGTSTVHGNHTTVLGRRHASATRLVPACHLTSAASSSSSSSSSSSSSSPVWGGLSLGLDPKLMNEPSSPSS-VPLLPHRQVPDHALRITTVSYMDSSTYIPFPHKDGIDARAFPTNPANFKV 194
The following BLAST results are available for this feature:
BLAST of NO03G00670.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30014.11.200e-2349.23hypothetical protein Naga_100802g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00670NO03G00670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00670.2NO03G00670.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00670.2.cds1NO03G00670.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00670.2.cds2NO03G00670.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00670.2 ID=NO03G00670.2|Name=NO03G00670.2|organism=Nannochloropsis oceanica|type=mRNA|length=2997bp
CCCCCCCTCAAGCACCTGCTCAGCCCCCACCTCTCCGTCCTGTCCCATGC
CATCGCCTCCTCCACCCCTACCTCCCACCTCCATACCCTCCGCAGCCCAA
GCCCGCTTCCTCCCTCCACGTCCCTCTGCTGCTGCTACTACTGCTGCTGC
TACTGCTGCTGCTGATACTCTTGCAGCAGCAGTTTTCTTCGTCCGCCCCT
CCTTCCTTCCTTTCCCGATTGCTGCTACGGCGGCTACCTCTTTCACTTCT
TCCCTCTCCTTCCCCTCTTCCTCCTCCTTTACCCCCTCCTCCTCCTCCCC
CTCCTCCTCCTCCTCATCCGCCACGGACTCCCTGCCCACGGCGGTAGGGG
CCGCAGACTTCTTTTTCTTCCTCTCGGGCGCCACGCCCAGATAACCACCA
CCACCACTGCTGCTGCTGCTGCTGCTGCTCGTCTCATGCTTGATTGCTCC
CACTTTCCCGTCTTTTTCCTCGGGGGAACAAGAGAAGGACGACAGCCGCT
TTCGCCTTTCACCACGCCTGCTTTGAGGCGACTGCTGCTGCTGCTGCCGT
TGCTGCTGGTCCTTCTCCGCGCCCTCTTGCCCTGCTGCCTCAGTTTGAGT
CATGGCACTTCTGCCTGTTATGATGGATTCTTTGCCTGCAACGCCCTTCT
CGCCCTCCACCCCACCCTCGCCTTTCCCTCCTTCCCTCCCTTCTTTGCTC
CTCGAAGAGGAGGGAAGCACCGACAATAACGACGGTGCTCCCAGGGCTGA
CACCGCCGGTAATGGTGGCGGTGGCGGCGATGACACCCGCAGCGGTGCCA
TACGTGCCGTCAGCTCCATTAAAGCTGTCGAGGCGTCCCATCCCCTGCGT
CTGAGTTGTCCGACGGCCGCCTTAACGAGCAGAGCCCGTCGGGCCTCTTC
CCAGGTCAGGTTGTAACACTCCTTCACTCTTTGGATCTCGGGGGTCGAGA
CACCTTTTCCCTTGGCTGAGGACAAGGACGAGGAGGAGGGAGGGGGGCTG
GTTGCGGACGTGAGGCGGGCTAGCAGGGTCTCGACGGCGGCAGCACGGGA
GAGGCCTTCCTGGTGTTGCAAGCGGTGCATCTCGGCTTGGACGGCTTGGC
GAAAGGTGCGGGTATGGCTGCGGGCCACGGCATCTGTAGAAAACAAAGAG
GAAGTGCTGCTCGTGGTCGTGGTCCAATCCAAAGGCACGTGCGTGTCCTG
CTTTCCTCCCCCACCCACGCTGTCGTCCATGATCTGTGGTGTTCGATCTG
GGATGATGATGGTGCGGAGAGTGAGAGAAGATGTGTGTACTGTGTGAATG
AATGTGTGAGTGTGTGTGCGTGTGTGTTGGGGCTGGCTGTGCACCGAGGC
ATGGTGCAATGCTGCTGGTGTTGGCATTGTGCATGCATTTCCTTCATGTG
CGACATCAATCAAGGTTCATAGGCATATGCATTCGAGAGCTGGCTCGTTG
AGAAAAGGAGGATGCGAAAAATCGCCTCGCCACCAGTCCTCTCTGATCAC
TGCTTCGCTTCGCCCTCTTTATGCTCTTCACCACCACCATACAGCTCCAC
TGCTTCATGGGCAGTAGAGTTAAGATTGATTCATGGCCGTGAGTGTATGG
TGGTCCCGGGCTGGTCGTGGTGGGGCCGCTGCAGTGCGTGCCCTAGATTG
GGGGGGGGGGTGGTTAAAAGCCATCCCCGGACGCAGTGCTGTTGCGAACT
ACCAGTCATGCGATGCACTGAATCTCAATGTTTACCAACCACATAAAAAA
ACAACACCACAGCCACCACAGCTATGCCATTTCCATGCACGGCTGCGCGC
AGCCTTTTGCCACGCTTCGTCTCGGGTTCGACCACCACTACGAGCTCTTC
ACCAGCATTGGCAGCAGCAGTCAGAGCATCGCCTTTTAGTACCATGAGTA
CGACATCACCATCGTCCTCCTCTTCCTCGTCTTTAGACTCCTTTATATCA
AGCCCTCCTTCTTGCTCCTCCTCCTCTCCCAATTCCGTCACCGGCAGCAT
CACCGCAATGAGCATACGTTGCTACTCCTCCGTCTCTTGTCGTGCGACAG
CTGCACGGCTCATGACTTCTTCCTCCTCTTCCTCCTCCTCTTCCTCCTCC
TCCTCTCCTCCCTCCGGCTTCTGGGGCGGCTTACCACCAGGCGTCACCCC
CCACCTTACGGACAACGACTCCTCCCCTTCCTCCTCTGTCCCTCTCTTGC
CCCCTCGGCAAGTCCCCGATGCCGTCCTCCGCTTCACGACGGTGGCTTAT
CTTGACTCGTCTGCCTATATTCCCTACCCTCACAAAGATGGAATTGACGC
CCGTGCCTTCACCACCAATCCCGCTAACTTCAAGGTAGCGGTCTTTTGAT
TTTTAATTGCAATTTTCAATTGTGGTGTTGCTGTGCCAAGATCTTGTGGG
GGTGGGAGAGAGAGTGGCGTGGGATGTTTCTGCGAATTGTCTGCGCATTT
GCATCCAACCGTTTCCCACCCTCCCTCTTTCCCTCCCTCTTTCCCTCTCT
CTTTCTCTGTTGTCACTCACCTCTTTCCCTCCCCAATTTCCTCTCGCCCT
CCCTTCATGCCTCAGGTGACCATGCAGGTGTCGATGAAGGACCTGGGCCT
CTCGGAACGGGAGCAAAAACGCTTACGCTGCCTGGTGGGCAGCCGTTACA
ACCCTGGCCGTAGAGACGTTACGCTGGTTTCAAATCGTTTCATGAATCGT
GACCACAACAAGCAGTACCTCATCTACTTGCTCGAGAACCTCGTCAGTGA
GGCTCAGGGGAAAGGGAACGCCAACGCCAGCGTGTGAGAGAGGAGAGGGA
GGGAGGGAAAGAAGAAGGGAGGGAGGGCGGGGTGTTCGGTGCATTGGGAA
ACAATAGGAGGGGGTAAGGTACACGAATCGAGGAGAACGGCCACGACCAA
ATTTAAGACGAAGAAGAAAATCAACAATAAGTACAAACACAACCTCAAGA
AGATGATGACGAAGAAGCGAGGAACATCCAAGCAGTCAGGGTGAGTG
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protein sequence of NO03G00670.2

>NO03G00670.2-protein ID=NO03G00670.2-protein|Name=NO03G00670.2|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MPFPCTAARSLLPRFVSGSTTTTSSSPALAAAVRASPFSTMSTTSPSSSS
SSSLDSFISSPPSCSSSSPNSVTGSITAMSIRCYSSVSCRATAARLMTSS
SSSSSSSSSSSPPSGFWGGLPPGVTPHLTDNDSSPSSSVPLLPPRQVPDA
VLRFTTVAYLDSSAYIPYPHKDGIDARAFTTNPANFKVAVF*
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mRNA from alignment at chr3:213615..216897+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00670.2 ID=NO03G00670.2|Name=NO03G00670.2|organism=Nannochloropsis oceanica|type=mRNA|length=3283bp|location=Sequence derived from alignment at chr3:213615..216897+ (Nannochloropsis oceanica)
CCCCCCCTCAAGCACCTGCTCAGCCCCCACCTCTCCGTCCTGTCCCATGC
CATCGCCTCCTCCACCCCTACCTCCCACCTCCATACCCTCCGCAGCCCAA
GCCCGCTTCCTCCCTCCACGTCCCTCTGCTGCTGCTACTACTGCTGCTGC
TACTGCTGCTGCTGATACTCTTGCAGCAGCAGTTTTCTTCGTCCGCCCCT
CCTTCCTTCCTTTCCCGATTGCTGCTACGGCGGCTACCTCTTTCACTTCT
TCCCTCTCCTTCCCCTCTTCCTCCTCCTTTACCCCCTCCTCCTCCTCCCC
CTCCTCCTCCTCCTCATCCGCCACGGACTCCCTGCCCACGGCGGTAGGGG
CCGCAGACTTCTTTTTCTTCCTCTCGGGCGCCACGCCCAGATAACCACCA
CCACCACTGCTGCTGCTGCTGCTGCTGCTCGTCTCATGCTTGATTGCTCC
CACTTTCCCGTCTTTTTCCTCGGGGGAACAAGAGAAGGACGACAGCCGCT
TTCGCCTTTCACCACGCCTGCTTTGAGGCGACTGCTGCTGCTGCTGCCGT
TGCTGCTGGTCCTTCTCCGCGCCCTCTTGCCCTGCTGCCTCAGTTTGAGT
CATGGCACTTCTGCCTGTTATGATGGATTCTTTGCCTGCAACGCCCTTCT
CGCCCTCCACCCCACCCTCGCCTTTCCCTCCTTCCCTCCCTTCTTTGCTC
CTCGAAGAGGAGGGAAGCACCGACAATAACGACGGTGCTCCCAGGGCTGA
CACCGCCGGTAATGGTGGCGGTGGCGGCGATGACACCCGCAGCGGTGCCA
TACGTGCCGTCAGCTCCATTAAAGCTGTCGAGGCGTCCCATCCCCTGCGT
CTGAGTTGTCCGACGGCCGCCTTAACGAGCAGAGCCCGTCGGGCCTCTTC
CCAGGTCAGGTTGTAACACTCCTTCACTCTTTGGATCTCGGGGGTCGAGA
CACCTTTTCCCTTGGCTGAGGACAAGGACGAGGAGGAGGGAGGGGGGCTG
GTTGCGGACGTGAGGCGGGCTAGCAGGGTCTCGACGGCGGCAGCACGGGA
GAGGCCTTCCTGGTGTTGCAAGCGGTGCATCTCGGCTTGGACGGCTTGGC
GAAAGGTGCGGGTATGGCTGCGGGCCACGGCATCTGTAGAAAACAAAGAG
GAAGTGCTGCTCGTGGTCGTGGTCCAATCCAAAGGCACGTGCGTGTCCTG
CTTTCCTCCCCCACCCACGCTGTCGTCCATGATCTGTGGTGTTCGATCTG
GGATGATGATGGTGCGGAGAGTGAGAGAAGATGTGTGTACTGTGTGAATG
AATGTGTGAGTGTGTGTGCGTGTGTGTTGGGGCTGGCTGTGCACCGAGGC
ATGGTGCAATGCTGCTGGTGTTGGCATTGTGCATGCATTTCCTTCATGTG
CGACATCAATCAAGGTTCATAGGCATATGCATTCGAGAGCTGGCTCGTTG
AGAAAAGGAGGATGCGAAAAATCGCCTCGCCACCAGTCCTCTCTGATCAC
TGCTTCGCTTCGCCCTCTTTATGCTCTTCACCACCACCATACAGCTCCAC
TGCTTCATGGGCAGTAGAGTTAAGATTGATTCATGGCCGTGAGTGTATGG
TGGTCCCGGGCTGGTCGTGGTGGGGCCGCTGCAGTGCGTGCCCTAGATTG
GGGGGGGGGGTGGTTAAAAGCCATCCCCGGACGCAGTGCTGTTGCGAACT
ACCAGTCATGCGATGCACTGAATCTCAATGTTTACCAACCACATAAAAAA
ACAACACCACAGCCACCACAGCTATGCCATTTCCATGCACGGCTGCGCGC
AGCCTTTTGCCACGCTTCGTCTCGGGTTCGACCACCACTACGAGCTCTTC
ACCAGCATTGGCAGCAGCAGTCAGAGCATCGCCTTTTAGTACCATGAGTA
CGACATCACCATCGTCCTCCTCTTCCTCGTCTTTAGACTCCTTTATATCA
AGGTAAATTTGCGGACAAGGGAAGGGGTGTGATAGTAATGATGTCTTTGT
GCGACCCTACTCAAACGGCGGACGGCAATCTCTCTCCTTTTCCTTCTGAA
CGCCCACCACACAACCTCGTACACACAGCCCTCCTTCTTGCTCCTCCTCC
TCTCCCAATTCCGTCACCGGCAGCATCACCGCAATGAGCATACGTTGCTA
CTCCTCCGTCTCTTGTCGTGCGACAGCTGCACGGCTCATGACTTCTTCCT
CCTCTTCCTCCTCCTCTTCCTCCTCCTCCTCTCCTCCCTCCGGCTTCTGG
GGCGGCTTACCACCAGGCGTCACCCCCCACCTTACGGACAACGACTCCTC
CCCTTCCTCCTCTGTCCCTCTCTTGCCCCCTCGGCAAGTCCCCGATGCCG
TCCTCCGCTTCACGACGGTGGCTTATCTTGACTCGTCTGCCTATATTCCC
TACCCTCACAAAGATGGAATTGACGCCCGTGCCTTCACCACCAATCCCGC
TAACTTCAAGGTAGCGGTCTTTTGATTTTTAATTGCAATTTTCAATTGTG
GTGTTGCTGTGCCAAGATCTTGTGGGGGTGGGAGAGAGAGTGGCGTGGGA
TGTTTCTGCGAATTGTCTGCGCATTTGCATCCAACCGTTTCCCACCCTCC
CTCTTTCCCTCCCTCTTTCCCTCTCTCTTTCTCTGTTGTCACTCACCTCT
TTCCCTCCCCAATTTCCTCTCGCCCTCCCTTCATGCCTCAGGTGACCATG
CAGGTGTCGATGAAGGACCTGGGCCTCTCGGAACGGGAGCAAAAACGCTT
ACGCTGCCTGGTACGTATGCTAGTGCTTTCTTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTACCTCCCTCCCTCCCTGTCTCTTTTTTGTTCCTTCGTCAT
AACTTCACGCTATTTTCGAACTTGCGCTCACCCTTCTGTCCTTCCTTCCT
CCCCCTACTCCTCCTCACAGGTGGGCAGCCGTTACAACCCTGGCCGTAGA
GACGTTACGCTGGTTTCAAATCGTTTCATGAATCGTGACCACAACAAGCA
GTACCTCATCTACTTGCTCGAGAACCTCGTCAGTGAGGCTCAGGGGAAAG
GGAACGCCAACGCCAGCGTGTGAGAGAGGAGAGGGAGGGAGGGAAAGAAG
AAGGGAGGGAGGGCGGGGTGTTCGGTGCATTGGGAAACAATAGGAGGGGG
TAAGGTACACGAATCGAGGAGAACGGCCACGACCAAATTTAAGACGAAGA
AGAAAATCAACAATAAGTACAAACACAACCTCAAGAAGATGATGACGAAG
AAGCGAGGAACATCCAAGCAGTCAGGGTGAGTG
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Coding sequence (CDS) from alignment at chr3:213615..216897+

>NO03G00670.2 ID=NO03G00670.2|Name=NO03G00670.2|organism=Nannochloropsis oceanica|type=CDS|length=576bp|location=Sequence derived from alignment at chr3:213615..216897+ (Nannochloropsis oceanica)
ATGCCATTTCCATGCACGGCTGCGCGCAGCCTTTTGCCACGCTTCGTCTC
GGGTTCGACCACCACTACGAGCTCTTCACCAGCATTGGCAGCAGCAGTCA
GAGCATCGCCTTTTAGTACCATGAGTACGACATCACCATCGTCCTCCTCT
TCCTCGTCTTTAGACTCCTTTATATCAAGCCCTCCTTCTTGCTCCTCCTC
CTCTCCCAATTCCGTCACCGGCAGCATCACCGCAATGAGCATACGTTGCT
ACTCCTCCGTCTCTTGTCGTGCGACAGCTGCACGGCTCATGACTTCTTCC
TCCTCTTCCTCCTCCTCTTCCTCCTCCTCCTCTCCTCCCTCCGGCTTCTG
GGGCGGCTTACCACCAGGCGTCACCCCCCACCTTACGGACAACGACTCCT
CCCCTTCCTCCTCTGTCCCTCTCTTGCCCCCTCGGCAAGTCCCCGATGCC
GTCCTCCGCTTCACGACGGTGGCTTATCTTGACTCGTCTGCCTATATTCC
CTACCCTCACAAAGATGGAATTGACGCCCGTGCCTTCACCACCAATCCCG
CTAACTTCAAGGTAGCGGTCTTTTGA
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Synonyms
Publications