NO03G00630.1, NO03G00630.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G00630.1
Unique Name	NO03G00630.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2342
Alignment location	chr3:198890..202395 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:198890..202395 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO03G00630.1 vs.
Match: CBJ29939.1 (RNA pseudouridylate synthase domain containing 1 [Ectocarpus siliculosus])

HSP 1 Score: 184.5 bits (467), Expect = 7.900e-43
Identity = 132/373 (35.39%), Postives = 184/373 (49.33%), Query Frame = 0

Query:   90 PLKVLYRKHDLLVIDKPPDVRMQGAFVVTVENLVRHYCPLDAPPSLALKYIHQLDYATSGVLCLGLSRKAAAATAELFMNRQTEKEYVALVEGHLDPSLLPVLDDVSESDDPALTSSSLPPSAYLPGIHPEAGGRGR----GGKGRGRKEGSRGVIYKPASTYYRDKQLALERRKRKEEEEGGGQEDGWTEEERRVLGGMKWKEAKRTLKDISAECEALSAADKEAKLAGLAPLPPPSLPPSKDLGAFRRKGEGKGAFVVDVAITEFKHDFRVRLGLPPPPPPPPPPASSPSASSPSLPPPARRARTHGLVVGYGRCEGKAVTKIRLRPISGRRHQLRVHCLHLGHPIVGDSTYG-GDTTSPRMMLHALALTL 458
            P + L    D +VI+KP DVRM G F V V+ L+R++CP        LK++HQLD+ATSGVLC+ L R+AAA   E F  R+ +K Y+A+V+G +DP  +P  ++                        PE  G GR    GG G GRK     V + PA  +++ K+  L R     E             E      + W + K   K  S    + + ADK   +A        +   + D G FR  G+G+G   VD +++E   DFR+RL                 A     P     +RT   V+ +G   G++VTK+ +RP +GRRHQLR+H LH+GHPI+GD+TYG  D T PRM LHA +LTL
Sbjct:   43 PTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCP--TLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREE-----------------------EPEGWGEGRDGNGGGGGGGRKRRPDSVQHTPAHGFFQRKKDLLLRAIELGET---------LSPEDLAFSKLSWGDIKFD-KAASRPFHSAAKADKIRAVAEAEAARFQTAQGAPDRGVFRAPGDGEGELRVDASVSEVPGDFRMRL--------------DEEAGGKGKP-----SRTFVKVLEHGSYRGRSVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDADHTIPRMCLHAQSLTL 361

The following BLAST results are available for this feature:

BLAST of NO03G00630.1 vs.

BLAST of NO03G00630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBJ29939.1	7.900e-43	35.39	RNA pseudouridylate synthase domain containing 1 [...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G00630	NO03G00630	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G00630.1	NO03G00630.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G00630.1.cds1	NO03G00630.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G00630.1.cds2	NO03G00630.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G00630.1.cds3	NO03G00630.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G00630.1.cds4	NO03G00630.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G00630.1.cds5	NO03G00630.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G00630.1.cds6	NO03G00630.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G00630.1.cds7	NO03G00630.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G00630.1.cds8	NO03G00630.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:198890..202395-
coding sequence from alignment at chr3:198890..202395-

mRNA sequence

>NO03G00630.1 ID=NO03G00630.1|Name=NO03G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2342bp
ATGTCATCTCCTAGTCTCGCCAGTGCCATAAGATCTGCACCCCCGGTGAC
CTGTGCTTCCAATCCAACAATGACAGTGAGCAATCATACGACGAGGAGGA
CCGCTCTCCCCACCACCACCGCTACTACCCTCACGACCAGCAGCGTTATC
ATTCCCACCCGCGGGCAGGCTGAGCTGGACAAGCATAACACGGGAGAGGG
AGACGATGTCAATCTGAAAGGAAAGGGAGACAGAAGGTCGGAGCCACGCA
CGTTGGAGGAGGCAGGGCCGTTGAAGGTGTTGTACAGGAAGCATGACCTG
CTGGTGATCGATAAGCCCCCAGACGTTCGCATGCAAGGTGCCTTCGTCGT
AACGGTCGAGAACCTCGTCCGTCACTACTGCCCCCTCGATGCGCCTCCCT
CACTCGCCCTCAAGTACATCCACCAACTGGACTACGCGACCTCGGGTGTG
CTTTGCTTGGGCCTCAGCCGCAAGGCTGCTGCCGCCACCGCAGAGCTGTT
TATGAACCGTCAGACGGAGAAGGAATATGTGGCCCTGGTGGAGGGACACC
TTGACCCCTCCCTCCTTCCCGTCCTCGACGACGTATCGGAATCGGACGAC
CCAGCGCTCACCTCGTCCTCTCTTCCTCCCTCCGCCTATCTGCCGGGCAT
CCACCCGGAGGCGGGAGGGAGGGGGAGGGGGGGGAAGGGGAGGGGGAGGA
AGGAGGGCTCGAGGGGAGTGATTTACAAGCCGGCGTCGACCTACTACAGA
GATAAGCAGCTGGCGCTCGAGAGGAGGAAGAGAAAGGAGGAAGAGGAGGG
GGGAGGGCAGGAGGACGGGTGGACGGAGGAGGAGCGGAGGGTTTTGGGGG
GCATGAAGTGGAAAGAGGCCAAGCGCACGTTAAAGGACATCTCCGCCGAA
TGTGAAGCTCTGTCTGCCGCCGACAAAGAGGCGAAATTAGCCGGCCTAGC
GCCCTTGCCCCCTCCCTCCCTCCCTCCCTCGAAGGACCTGGGAGCGTTTC
GGAGGAAGGGGGAGGGGAAAGGCGCGTTTGTGGTGGATGTGGCCATCACG
GAGTTCAAACACGACTTCCGGGTCCGACTTGGCCTCCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTGCGTCCTCCCCTTCCGCCTCCTCTCCCTCCCTCC
CTCCCCCCGCCCGTCGCGCTCGTACGCACGGCCTGGTGGTGGGCTACGGC
CGCTGTGAAGGGAAGGCGGTGACCAAGATACGGCTGCGGCCCATATCAGG
GCGACGACACCAGCTCCGTGTCCACTGCCTGCATCTGGGGCACCCGATAG
TTGGAGATAGCACCTACGGCGGAGACACCACCTCGCCTCGGATGATGCTT
CACGCCCTCGCGCTCACGCTCCCCTTCCCCGCGGGCAAGGGCCCGGGTAT
GACATTGACCATCCGCACCCATGACCCCTTCGACGGGAAGTACTTTGAGC
CTCTCTGAAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGAAGGGAGG
AAACAGGAACAGCAATATACATTAGAAGGGAAGACAGAGGGAGAAGAAGA
GAGATTCAGGAAGAGACAAAAAGAGAGAGACCACTTGTATGTATTTATAC
ATCTATATCAAGAAGGAGAATAGCTACAGCTAAATTAGGGCAGGATGTGT
AAATCTAAGAGGGGAAAAAGCAGGAGAGGGGGAATAGCGATGTGTGTAAA
ATTTCGAGCAGAGATAACGAAGGGAGAGAGGAGGAAAGATGGATGAAAGG
AGGGAGGGAGGGAAGGAGAGGTACGGGTAAGCAAATTCTAAAGGCTATGA
CAGTGCGGGGAAAAGGTGATGATTAAGAGAGAGGATGAAAGCAGGGGAAG
ACCATCAGCAGAAGCCACGCAGGAAGAGGAGGAGAGATGGTCGTGAGGAG
GAGGAAAGAAACTTAATGCATCGACTATGACTTGCTTAGGCTCAACTGGT
TGAAGACAGAGGGGCTGCGAGAGATAAATAAGGAGGAGGTAGGTCTCGCG
GTGGTGGGTGTCACACACATACACGCACACACAAACACACACACACATAC
ACACACACACACACATACACACACATGTATGTGTACAAAGGGAGAGGCTG
TTCTGAGGGGGTAAAGTACACACACATATACATGAGTCATAGAAAGACAG
CGGTGAGGAGGAGGAGGGTGGAGGGAGCTCATGCCACGACTTGAGCACCC
AAATGCCCCATGGGCCATATGGATACGAAGAAACAAAAGCGATTAAAGAA
AGAGGAAAAAATCAAGAAGAAGGAAGAGAGAAAGAAGGTAGAGAGGCAGA
AAAAGAATAGACGGAAAAGGAGAATGCTTACGACTTGTTTAG

protein sequence of NO03G00630.1

>NO03G00630.1-protein ID=NO03G00630.1-protein|Name=NO03G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MSSPSLASAIRSAPPVTCASNPTMTVSNHTTRRTALPTTTATTLTTSSVI
IPTRGQAELDKHNTGEGDDVNLKGKGDRRSEPRTLEEAGPLKVLYRKHDL
LVIDKPPDVRMQGAFVVTVENLVRHYCPLDAPPSLALKYIHQLDYATSGV
LCLGLSRKAAAATAELFMNRQTEKEYVALVEGHLDPSLLPVLDDVSESDD
PALTSSSLPPSAYLPGIHPEAGGRGRGGKGRGRKEGSRGVIYKPASTYYR
DKQLALERRKRKEEEEGGGQEDGWTEEERRVLGGMKWKEAKRTLKDISAE
CEALSAADKEAKLAGLAPLPPPSLPPSKDLGAFRRKGEGKGAFVVDVAIT
EFKHDFRVRLGLPPPPPPPPPPASSPSASSPSLPPPARRARTHGLVVGYG
RCEGKAVTKIRLRPISGRRHQLRVHCLHLGHPIVGDSTYGGDTTSPRMML
HALALTLPFPAGKGPGMTLTIRTHDPFDGKYFEPL*

mRNA from alignment at chr3:198890..202395-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G00630.1 ID=NO03G00630.1|Name=NO03G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=3506bp|location=Sequence derived from alignment at chr3:198890..202395- (Nannochloropsis oceanica)
ATGTCATCTCCTAGTCTCGCCAGTGCCATAAGATCTGCACCCCCGGTGAC
CTGTGCTTCCAATCCAACAATGACAGTGAGCAATCATACGACGAGGTACG
TGCCCTACACCATACACATCTCTCTCTCAAGCGAGTGCGGTACCATGTCA
CTTGTTTCAATGATTTTATACCTCCATTAGCTCATGGTATTTCCTCTCCC
CCCTCCCCCTTTCCTCCACCCCGCACGCGTAGGAGGACCGCTCTCCCCAC
CACCACCGCTACTACCCTCACGACCAGCAGCGTTATCATTCCCACCCGCG
GGCAGGCTGAGCTGGACAAGCATAACACGGGAGAGGGAGACGATGTCAAT
CTGAAAGGAAAGGGAGACAGAAGGTCGGAGCCACGCACGTTGGAGGAGGC
AGGGCCGTTGAAGGTGTTGTACAGGAAGCATGACCTGCTGGTGATCGATA
AGGCGAGTGCAAGACAGAGTTTGTTAGAAACGAAAAGGAGGGAGGGCTTC
AAAAATGGCGAAGATGGAGAGTAAATAATGCAAACGGGTCCAAGGCCGAC
ATTTCATGCGCCCAAAGGCAGCCACTGCCGAATACACGTTCACTTATTCC
TCCCTCCCTCCCTCCTTCCCTTTTTCCCTTCTTCCCTCCTCCCTAGCCCC
CAGACGTTCGCATGCAAGGTGCCTTCGTCGTAACGGTCGAGAACCTCGTC
CGTCACTACTGCCCCCTCGATGCGCCTCCCTCACTCGCCCTCAAGTACAT
CCACCAACTGGACTACGCGACCTCGGGTGTGCTTTGCTTGGGCCTCAGCC
GCAAGTGAGGAGGGAGAGAGGGAGGGAGGAAGGGAGAAAGGGTGGAACGA
GAGCTAGGATATCTTCCAATACATGATTTCCATCTGACGTCGAACGCCTT
TTTTTGTCTCCCTTCCCTTGTCATAGGGCTGCTGCCGCCACCGCAGAGCT
GTTTATGAACCGTCAGACGGAGAAGGAATATGTGGCCCTGGTGGAGGGAC
ACCTTGACCCCTCCCTCCTTCCCGTCCTCGACGACGTATCGGAATCGGAC
GACCCAGCGCTCACCTCGTCCTCTCTTCCTCCCTCCGCCTATCTGCCGGG
CATCCACCCGGAGGCGGGAGGGAGGGGGAGGGGGGGGAAGGGGAGGGGGA
GGAAGGAGGGCTCGAGGGGAGTGATTTACAAGCCGGCGTCGACCTACTAC
AGAGATAAGCAGCTGGCGCTCGAGAGGAGGAAGAGAAAGGAGGAAGAGGA
GGGGGGAGGGCAGGAGGACGGGTGGACGGAGGAGGAGCGGAGGGTTTTGG
GGGGCATGAAGTGGAAAGAGGCCAAGCGCACGTTAAAGGGTCAGCTTAGG
GAGGGGGGAAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GAGGGAAAGGGATGGATGCTTCGATCTCTTTTCATCCTATCAATCCCAGT
ATACGTATGACTGTCTGTGTACATACATACATACATACAGTCATGCATGC
CTACGTATAAATCTGTATATAATTTATGCTCATCGTGATCTTCTCCCTTT
TTCAGACATCTCCGCCGAATGTGAAGCTCTGTCTGCCGCCGACAAAGAGG
CGAAATTAGCCGGCCTAGCGCCCTTGCCCCCTCCCTCCCTCCCTCCCTCG
AAGGACCTGGGAGCGTTTCGGAGGAAGGGGGAGGGGAAAGGCGCGTTTGT
GGTGGATGTGGCCATCACGGAGGTAGGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGCGATAGGGAGTTGGGACGGGAAAGATAACTCCG
TGGGGAGGGAGGAAAAAAAGGAGAGAGGGAAGGAGGAAGGGAGGGAGGGA
GGGAGGGAGGAATGGCTGAGAGAAAACTGACTTGTCCTCTTCCTTTCCTC
CTCCATGCCCTCCTGCCACAATCACCACACAGTTCAAACACGACTTCCGG
GTCCGACTTGGCCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCGTC
CTCCCCTTCCGCCTCCTCTCCCTCCCTCCCTCCCCCCGCCCGTCGCGCTC
GTACGCACGGCCTGGTGGTGGGCTACGGCCGCTGTGAAGGGAAGGCGGTG
ACCAAGATACGGCTGCGGCCCATATCAGGGCGACGACACCAGCTCCGTGT
CCACTGCCTGCATCTGGGGCACCCGATAGGTGAGGAGGGAGGGAGGGAGG
ACTCTTCGCGAGCTGCCTCGGCTATATTGCCCGTACGTACTGTCTCTCCT
CACTCCCTCTTTCCCTCCCACTTTCCCTCCCTTCCTTTCTCTAGTTGGAG
ATAGCACCTACGGCGGAGACACCACCTCGCCTCGGATGATGCTTCACGCC
CTCGCGCTCACGCTCCCCTTCCCCGCGGGCAAGGTGTGTCATCTCCTCTT
CCCTCCATCTCCCCCTCCCTTCCTCCCTCTTTCTCTCTTTTCTTCTCTTC
CTCGCATGTCCTTTCAGCTCTTCCCCGTACTCACACTTTCTTTTGCCCTC
CTCTCCTCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCT
CAGGGCCCGGGTATGACATTGACCATCCGCACCCATGACCCCTTCGACGG
GAAGTACTTTGAGCCTCTCTGAAAGAGGGAGGGAGGGAGGGAGGGAGGGA
GGAAGGAAGGGAGGAAACAGGAACAGCAATATACATTAGAAGGGAAGACA
GAGGGAGAAGAAGAGAGATTCAGGAAGAGACAAAAAGAGAGAGACCACTT
GTATGTATTTATACATCTATATCAAGAAGGAGAATAGCTACAGCTAAATT
AGGGCAGGATGTGTAAATCTAAGAGGGGAAAAAGCAGGAGAGGGGGAATA
GCGATGTGTGTAAAATTTCGAGCAGAGATAACGAAGGGAGAGAGGAGGAA
AGATGGATGAAAGGAGGGAGGGAGGGAAGGAGAGGTACGGGTAAGCAAAT
TCTAAAGGCTATGACAGTGCGGGGAAAAGGTGATGATTAAGAGAGAGGAT
GAAAGCAGGGGAAGACCATCAGCAGAAGCCACGCAGGAAGAGGAGGAGAG
ATGGTCGTGAGGAGGAGGAAAGAAACTTAATGCATCGACTATGACTTGCT
TAGGCTCAACTGGTTGAAGACAGAGGGGCTGCGAGAGATAAATAAGGAGG
AGGTAGGTCTCGCGGTGGTGGGTGTCACACACATACACGCACACACAAAC
ACACACACACATACACACACACACACACATACACACACATGTATGTGTAC
AAAGGGAGAGGCTGTTCTGAGGGGGTAAAGTACACACACATATACATGAG
TCATAGAAAGACAGCGGTGAGGAGGAGGAGGGTGGAGGGAGCTCATGCCA
CGACTTGAGCACCCAAATGCCCCATGGGCCATATGGATACGAAGAAACAA
AAGCGATTAAAGAAAGAGGAAAAAATCAAGAAGAAGGAAGAGAGAAAGAA
GGTAGAGAGGCAGAAAAAGAATAGACGGAAAAGGAGAATGCTTACGACTT
GTTTAG

Coding sequence (CDS) from alignment at chr3:198890..202395-

>NO03G00630.1 ID=NO03G00630.1|Name=NO03G00630.1|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at chr3:198890..202395- (Nannochloropsis oceanica)
ATGTCATCTCCTAGTCTCGCCAGTGCCATAAGATCTGCACCCCCGGTGAC
CTGTGCTTCCAATCCAACAATGACAGTGAGCAATCATACGACGAGGAGGA
CCGCTCTCCCCACCACCACCGCTACTACCCTCACGACCAGCAGCGTTATC
ATTCCCACCCGCGGGCAGGCTGAGCTGGACAAGCATAACACGGGAGAGGG
AGACGATGTCAATCTGAAAGGAAAGGGAGACAGAAGGTCGGAGCCACGCA
CGTTGGAGGAGGCAGGGCCGTTGAAGGTGTTGTACAGGAAGCATGACCTG
CTGGTGATCGATAAGCCCCCAGACGTTCGCATGCAAGGTGCCTTCGTCGT
AACGGTCGAGAACCTCGTCCGTCACTACTGCCCCCTCGATGCGCCTCCCT
CACTCGCCCTCAAGTACATCCACCAACTGGACTACGCGACCTCGGGTGTG
CTTTGCTTGGGCCTCAGCCGCAAGGCTGCTGCCGCCACCGCAGAGCTGTT
TATGAACCGTCAGACGGAGAAGGAATATGTGGCCCTGGTGGAGGGACACC
TTGACCCCTCCCTCCTTCCCGTCCTCGACGACGTATCGGAATCGGACGAC
CCAGCGCTCACCTCGTCCTCTCTTCCTCCCTCCGCCTATCTGCCGGGCAT
CCACCCGGAGGCGGGAGGGAGGGGGAGGGGGGGGAAGGGGAGGGGGAGGA
AGGAGGGCTCGAGGGGAGTGATTTACAAGCCGGCGTCGACCTACTACAGA
GATAAGCAGCTGGCGCTCGAGAGGAGGAAGAGAAAGGAGGAAGAGGAGGG
GGGAGGGCAGGAGGACGGGTGGACGGAGGAGGAGCGGAGGGTTTTGGGGG
GCATGAAGTGGAAAGAGGCCAAGCGCACGTTAAAGGACATCTCCGCCGAA
TGTGAAGCTCTGTCTGCCGCCGACAAAGAGGCGAAATTAGCCGGCCTAGC
GCCCTTGCCCCCTCCCTCCCTCCCTCCCTCGAAGGACCTGGGAGCGTTTC
GGAGGAAGGGGGAGGGGAAAGGCGCGTTTGTGGTGGATGTGGCCATCACG
GAGTTCAAACACGACTTCCGGGTCCGACTTGGCCTCCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTGCGTCCTCCCCTTCCGCCTCCTCTCCCTCCCTCC
CTCCCCCCGCCCGTCGCGCTCGTACGCACGGCCTGGTGGTGGGCTACGGC
CGCTGTGAAGGGAAGGCGGTGACCAAGATACGGCTGCGGCCCATATCAGG
GCGACGACACCAGCTCCGTGTCCACTGCCTGCATCTGGGGCACCCGATAG
TTGGAGATAGCACCTACGGCGGAGACACCACCTCGCCTCGGATGATGCTT
CACGCCCTCGCGCTCACGCTCCCCTTCCCCGCGGGCAAGGGCCCGGGTAT
GACATTGACCATCCGCACCCATGACCCCTTCGACGGGAAGTACTTTGAGC
CTCTCTGA

Synonyms

Publications