NO03G00600.1, NO03G00600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00600.1
Unique NameNO03G00600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1582
Alignment locationchr3:194556..196452 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:194556..196452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G00600.1 vs.
Match: EWM29484.1 (hypothetical protein Naga_100928g4, partial [Nannochloropsis gaditana])

HSP 1 Score: 223.0 bits (567), Expect = 2.100e-54
Identity = 107/172 (62.21%), Postives = 136/172 (79.07%), Query Frame = 0
Query:    1 MSQAWVFLLDGSVSMGDAYTHPSLLEALPSALQDPPPTKLQVAQEITTLLFAAQAVAEAGRKSKKCEAGIYVFGTDDTAHPLQELGEGYEHLLEVAPIQHLHLGCVAEARRLLPSQKGVEGDLLSGLILAVDRLRFRTGMMGKKCERHLVVVTDACSRLSSTDGLEETVQQL 173
            M QAW+FLLD S SMGD Y HP+LL+ LPS++Q PPP+KLQVAQEI TLL AAQAVAE+GR ++KC+ G   FGTD+T+HPL+ LG GYE+LLEV+P+  L  G + +   L PS+ GV+GD+L+GLILAVDRL+ RT ++GK+C RHLVVVTDACS L   +GLE  V+Q+
Sbjct:    1 MQQAWLFLLDTSTSMGDPYAHPALLDDLPSSIQVPPPSKLQVAQEIVTLLVAAQAVAESGRATRKCQIGACAFGTDETSHPLEALGAGYENLLEVSPLHPLDFGRLLDVLHLPPSRTGVKGDILAGLILAVDRLKARTEVLGKRCHRHLVVVTDACSALREVEGLEVVVEQV 172          
The following BLAST results are available for this feature:
BLAST of NO03G00600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29484.12.100e-5462.21hypothetical protein Naga_100928g4, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00600NO03G00600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00600.1NO03G00600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00600.1.cds1NO03G00600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00600.1.cds2NO03G00600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00600.1.cds3NO03G00600.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00600.1 ID=NO03G00600.1|Name=NO03G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1582bp
ACAGTGCACCAAAAAGCACACCGCCCACGCCATGTCACAAGCATGGGTCT
TCTTGCTTGACGGCAGCGTGAGCATGGGCGACGCCTACACGCATCCCTCC
CTCCTGGAGGCCTTGCCTTCAGCTTTGCAAGACCCTCCTCCCACCAAGCT
TCAGGTGGCCCAAGAAATAACCACCCTCCTCTTTGCCGCACAAGCCGTGG
CTGAAGCAGGGAGGAAAAGCAAAAAATGTGAGGCGGGAATCTACGTATTC
GGGACCGACGATACCGCCCACCCCCTGCAAGAGCTTGGGGAGGGCTACGA
GCATCTGCTAGAAGTTGCCCCTATCCAACATCTACACCTGGGATGTGTGG
CTGAGGCCCGCCGTCTCCTTCCCTCCCAGAAGGGGGTGGAAGGAGATCTA
CTTTCCGGGCTCATCCTGGCAGTGGACCGTTTGAGGTTCAGGACGGGGAT
GATGGGCAAGAAGTGTGAGCGGCATCTGGTGGTGGTGACTGATGCTTGCT
CGCGTTTGTCGAGCACGGACGGGCTGGAAGAGACGGTGCAACAGCTGATC
GAGATGGACGTGCGCTTACAATTTGTCGGCTTCAACCTCCCGTCATTCAC
CTCCTCCGAAGATTCCTCCTCCTCCTCTTCCGCCGCCGCCACCGCCGCCG
TCTCCGTCAAAAAAGAGAAAGAAGGAGAGGAGAAAAAAAAGAAAAAAAAA
GAAGAAGGAGAAGAGGAAGAAGGAGGAGGAACAGGAGGAGGAGGAGGAGG
AGGAGGAGCAGCAGCAGCAGGAGAAGGAGGAGGGGGGGGAGGAGGAGGAG
GAGAAGGAGGAGGAGAAGGAGGAAGAAGAAGAGCAGCAGCAGCAGCAGAA
GCAGCAGCAGGAGGAGAAGAAGGAGAAGGAGAAGGAGGTGGAGGAGGAGG
AGAAGAAGAAGGAGGAGGAGGAAGAACAGCAGCAGGAGAAGCAGCAGCAG
CAGTAGCAGCAGCAGCAGCTGCAGGAGTAGAAGGAGAAGGAGAAGAAATA
AGAGCAACAGCCGCAACAGAATCCGAGGTCGACCATATCCGCCGTGAGAA
CTACGCCATGGTCTCCTCCATCATCACCTGCCTCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCTCCA
CCACCCCCCCTCCTTGAAGCAGCCCCCTTCCTCTTACATCTCTCCCAGCG
CGCCTTCCAAAAAGTCGGCCACAGCGCCAACAGCAACATGCCTTTCCTCC
TTCCCTCCCTCCCCTTCACCCTTCGCGCGCAGGTCTCTGCCCTGACGATG
CCTGCCCGTCCTCCCTCCCTCAAGAAGTACGCTCGACACGACCCGAGCAA
GCAAGCCCTAAAAGTGGATCGTCGCTACACGGTGGAGGAAGGGGGGGAGG
ATGGGGGGGAGGGAGGGAGGGAGTTGGAGAGGAGGGAGATGGTGAAGGGC
TATCGGTATGGTGACGTGTACCTGCCCGTGGACTCGACGGCGGAGAGAAG
GCTCAAGTTGGAGGGGAGGGAGGGAGGGAAGGAGGGAGGGGGGGAGGGGG
GGGCGGGACGGTGGTTGAGATGCGGGTGCTAG
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protein sequence of NO03G00600.1

>NO03G00600.1-protein ID=NO03G00600.1-protein|Name=NO03G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=517bp
MSQAWVFLLDGSVSMGDAYTHPSLLEALPSALQDPPPTKLQVAQEITTLL
FAAQAVAEAGRKSKKCEAGIYVFGTDDTAHPLQELGEGYEHLLEVAPIQH
LHLGCVAEARRLLPSQKGVEGDLLSGLILAVDRLRFRTGMMGKKCERHLV
VVTDACSRLSSTDGLEETVQQLIEMDVRLQFVGFNLPSFTSSEDSSSSSS
AAATAAVSVKKEKEGEEKKKKKKEEGEEEEGGGTGGGGGGGGAAAAGEGG
GGGGGGGEGGGEGGRRRAAAAAEAAAGGEEGEGEGGGGGGEEEGGGGRTA
AGEAAAAVAAAAAAGVEGEGEEIRATAATESEVDHIRRENYAMVSSIITC
LSSSSSSSSSSSSSSSFSSSSSPPPPLLEAAPFLLHLSQRAFQKVGHSAN
SNMPFLLPSLPFTLRAQVSALTMPARPPSLKKYARHDPSKQALKVDRRYT
VEEGGEDGGEGGRELERREMVKGYRYGDVYLPVDSTAERRLKLEGREGGK
EGGGEGGAGRWLRCGC*
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mRNA from alignment at chr3:194556..196452+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00600.1 ID=NO03G00600.1|Name=NO03G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1897bp|location=Sequence derived from alignment at chr3:194556..196452+ (Nannochloropsis oceanica)
ACAGTGCACCAAAAAGCACACCGCCCACGCCATGTCACAAGCATGGGTCT TCTTGCTTGACGGCAGCGTGAGCATGGGCGACGCCTACACGCATCCCTCC CTCCTGGAGGCCTTGCCTTCAGCTTTGCAAGACCCTCCTCCCACCAAGCT TCAGGTGGCCCAAGAAATAACCACCCTCCTCTTTGCCGCACAAGCCGTGG CTGAAGCAGGCAAGTCTGGAATGAGATGAGACGGGATCAATGGGAGGGTG CTGGACGAGAGATGGAAAATAAATTGCAGGAGCGTCAAGAAAGCGCATAC GGGAAGTCCCGTTATCCTGATGCGTCTTCACTCACAAATTTCACAAATCC ATGTAATCGCCCTCACCCCCCCCTCTCTCTTTCACACAGGGAGGAAAAGC AAAAAATGTGAGGCGGGAATCTACGTATTCGGGACCGACGATACCGCCCA CCCCCTGCAAGAGCTTGGGGAGGGCTACGAGCATCTGCTAGAAGTTGCCC CTATCCAACATCTACACCTGGGATGTGTGGCTGAGGCCCGCCGTCTCCTT CCCTCCCAGAAGGGGGTGGAAGGAGATCTACTTTCCGGGCTCATCCTGGC AGTGGACCGTTTGAGGTTCAGGACGGGGATGATGGGCAAGAAGTGTGAGC GGCATCTGGTGGTGGTGACTGATGCTTGCTCGCGTTTGTCGAGCACGGAC GGGCTGGAAGAGACGGTGCAACAGGTCGGGGAGGGAGGGAGGGAGGGAGA GAGAGAGGGAGGATTTTTTTTAAATGAGCTGGATTTGAGCAGGCTTTGTC GACCACTGTCCTCATTCCATCCCTCCCCCCCTTCTCCCTCCCTTCCTGAA CCCCGCCAGCTGATCGAGATGGACGTGCGCTTACAATTTGTCGGCTTCAA CCTCCCGTCATTCACCTCCTCCGAAGATTCCTCCTCCTCCTCTTCCGCCG CCGCCACCGCCGCCGTCTCCGTCAAAAAAGAGAAAGAAGGAGAGGAGAAA AAAAAGAAAAAAAAAGAAGAAGGAGAAGAGGAAGAAGGAGGAGGAACAGG AGGAGGAGGAGGAGGAGGAGGAGCAGCAGCAGCAGGAGAAGGAGGAGGGG GGGGAGGAGGAGGAGGAGAAGGAGGAGGAGAAGGAGGAAGAAGAAGAGCA GCAGCAGCAGCAGAAGCAGCAGCAGGAGGAGAAGAAGGAGAAGGAGAAGG AGGTGGAGGAGGAGGAGAAGAAGAAGGAGGAGGAGGAAGAACAGCAGCAG GAGAAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCTGCAGGAGTAGAAGGA GAAGGAGAAGAAATAAGAGCAACAGCCGCAACAGAATCCGAGGTCGACCA TATCCGCCGTGAGAACTACGCCATGGTCTCCTCCATCATCACCTGCCTCT CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCC TCCTCCTCCTCTCCACCACCCCCCCTCCTTGAAGCAGCCCCCTTCCTCTT ACATCTCTCCCAGCGCGCCTTCCAAAAAGTCGGCCACAGCGCCAACAGCA ACATGCCTTTCCTCCTTCCCTCCCTCCCCTTCACCCTTCGCGCGCAGGTC TCTGCCCTGACGATGCCTGCCCGTCCTCCCTCCCTCAAGAAGTACGCTCG ACACGACCCGAGCAAGCAAGCCCTAAAAGTGGATCGTCGCTACACGGTGG AGGAAGGGGGGGAGGATGGGGGGGAGGGAGGGAGGGAGTTGGAGAGGAGG GAGATGGTGAAGGGCTATCGGTATGGTGACGTGTACCTGCCCGTGGACTC GACGGCGGAGAGAAGGCTCAAGTTGGAGGGGAGGGAGGGAGGGAAGGAGG GAGGGGGGGAGGGGGGGGCGGGACGGTGGTTGAGATGCGGGTGCTAG
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Coding sequence (CDS) from alignment at chr3:194556..196452+

>NO03G00600.1 ID=NO03G00600.1|Name=NO03G00600.1|organism=Nannochloropsis oceanica|type=CDS|length=1551bp|location=Sequence derived from alignment at chr3:194556..196452+ (Nannochloropsis oceanica)
ATGTCACAAGCATGGGTCTTCTTGCTTGACGGCAGCGTGAGCATGGGCGA
CGCCTACACGCATCCCTCCCTCCTGGAGGCCTTGCCTTCAGCTTTGCAAG
ACCCTCCTCCCACCAAGCTTCAGGTGGCCCAAGAAATAACCACCCTCCTC
TTTGCCGCACAAGCCGTGGCTGAAGCAGGGAGGAAAAGCAAAAAATGTGA
GGCGGGAATCTACGTATTCGGGACCGACGATACCGCCCACCCCCTGCAAG
AGCTTGGGGAGGGCTACGAGCATCTGCTAGAAGTTGCCCCTATCCAACAT
CTACACCTGGGATGTGTGGCTGAGGCCCGCCGTCTCCTTCCCTCCCAGAA
GGGGGTGGAAGGAGATCTACTTTCCGGGCTCATCCTGGCAGTGGACCGTT
TGAGGTTCAGGACGGGGATGATGGGCAAGAAGTGTGAGCGGCATCTGGTG
GTGGTGACTGATGCTTGCTCGCGTTTGTCGAGCACGGACGGGCTGGAAGA
GACGGTGCAACAGCTGATCGAGATGGACGTGCGCTTACAATTTGTCGGCT
TCAACCTCCCGTCATTCACCTCCTCCGAAGATTCCTCCTCCTCCTCTTCC
GCCGCCGCCACCGCCGCCGTCTCCGTCAAAAAAGAGAAAGAAGGAGAGGA
GAAAAAAAAGAAAAAAAAAGAAGAAGGAGAAGAGGAAGAAGGAGGAGGAA
CAGGAGGAGGAGGAGGAGGAGGAGGAGCAGCAGCAGCAGGAGAAGGAGGA
GGGGGGGGAGGAGGAGGAGGAGAAGGAGGAGGAGAAGGAGGAAGAAGAAG
AGCAGCAGCAGCAGCAGAAGCAGCAGCAGGAGGAGAAGAAGGAGAAGGAG
AAGGAGGTGGAGGAGGAGGAGAAGAAGAAGGAGGAGGAGGAAGAACAGCA
GCAGGAGAAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCTGCAGGAGTAGA
AGGAGAAGGAGAAGAAATAAGAGCAACAGCCGCAACAGAATCCGAGGTCG
ACCATATCCGCCGTGAGAACTACGCCATGGTCTCCTCCATCATCACCTGC
CTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTT
CTCCTCCTCCTCCTCTCCACCACCCCCCCTCCTTGAAGCAGCCCCCTTCC
TCTTACATCTCTCCCAGCGCGCCTTCCAAAAAGTCGGCCACAGCGCCAAC
AGCAACATGCCTTTCCTCCTTCCCTCCCTCCCCTTCACCCTTCGCGCGCA
GGTCTCTGCCCTGACGATGCCTGCCCGTCCTCCCTCCCTCAAGAAGTACG
CTCGACACGACCCGAGCAAGCAAGCCCTAAAAGTGGATCGTCGCTACACG
GTGGAGGAAGGGGGGGAGGATGGGGGGGAGGGAGGGAGGGAGTTGGAGAG
GAGGGAGATGGTGAAGGGCTATCGGTATGGTGACGTGTACCTGCCCGTGG
ACTCGACGGCGGAGAGAAGGCTCAAGTTGGAGGGGAGGGAGGGAGGGAAG
GAGGGAGGGGGGGAGGGGGGGGCGGGACGGTGGTTGAGATGCGGGTGCTA
G
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Synonyms
Publications