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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:194556..196452 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G00600.1 vs.
Match: EWM29484.1 (hypothetical protein Naga_100928g4, partial [Nannochloropsis gaditana]) HSP 1 Score: 223.0 bits (567), Expect = 2.100e-54 Identity = 107/172 (62.21%), Postives = 136/172 (79.07%), Query Frame = 0
Query: 1 MSQAWVFLLDGSVSMGDAYTHPSLLEALPSALQDPPPTKLQVAQEITTLLFAAQAVAEAGRKSKKCEAGIYVFGTDDTAHPLQELGEGYEHLLEVAPIQHLHLGCVAEARRLLPSQKGVEGDLLSGLILAVDRLRFRTGMMGKKCERHLVVVTDACSRLSSTDGLEETVQQL 173
M QAW+FLLD S SMGD Y HP+LL+ LPS++Q PPP+KLQVAQEI TLL AAQAVAE+GR ++KC+ G FGTD+T+HPL+ LG GYE+LLEV+P+ L G + + L PS+ GV+GD+L+GLILAVDRL+ RT ++GK+C RHLVVVTDACS L +GLE V+Q+
Sbjct: 1 MQQAWLFLLDTSTSMGDPYAHPALLDDLPSSIQVPPPSKLQVAQEIVTLLVAAQAVAESGRATRKCQIGACAFGTDETSHPLEALGAGYENLLEVSPLHPLDFGRLLDVLHLPPSRTGVKGDILAGLILAVDRLKARTEVLGKRCHRHLVVVTDACSALREVEGLEVVVEQV 172
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G00600.1 ID=NO03G00600.1|Name=NO03G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1582bp ACAGTGCACCAAAAAGCACACCGCCCACGCCATGTCACAAGCATGGGTCT TCTTGCTTGACGGCAGCGTGAGCATGGGCGACGCCTACACGCATCCCTCC CTCCTGGAGGCCTTGCCTTCAGCTTTGCAAGACCCTCCTCCCACCAAGCT TCAGGTGGCCCAAGAAATAACCACCCTCCTCTTTGCCGCACAAGCCGTGG CTGAAGCAGGGAGGAAAAGCAAAAAATGTGAGGCGGGAATCTACGTATTC GGGACCGACGATACCGCCCACCCCCTGCAAGAGCTTGGGGAGGGCTACGA GCATCTGCTAGAAGTTGCCCCTATCCAACATCTACACCTGGGATGTGTGG CTGAGGCCCGCCGTCTCCTTCCCTCCCAGAAGGGGGTGGAAGGAGATCTA CTTTCCGGGCTCATCCTGGCAGTGGACCGTTTGAGGTTCAGGACGGGGAT GATGGGCAAGAAGTGTGAGCGGCATCTGGTGGTGGTGACTGATGCTTGCT CGCGTTTGTCGAGCACGGACGGGCTGGAAGAGACGGTGCAACAGCTGATC GAGATGGACGTGCGCTTACAATTTGTCGGCTTCAACCTCCCGTCATTCAC CTCCTCCGAAGATTCCTCCTCCTCCTCTTCCGCCGCCGCCACCGCCGCCG TCTCCGTCAAAAAAGAGAAAGAAGGAGAGGAGAAAAAAAAGAAAAAAAAA GAAGAAGGAGAAGAGGAAGAAGGAGGAGGAACAGGAGGAGGAGGAGGAGG AGGAGGAGCAGCAGCAGCAGGAGAAGGAGGAGGGGGGGGAGGAGGAGGAG GAGAAGGAGGAGGAGAAGGAGGAAGAAGAAGAGCAGCAGCAGCAGCAGAA GCAGCAGCAGGAGGAGAAGAAGGAGAAGGAGAAGGAGGTGGAGGAGGAGG AGAAGAAGAAGGAGGAGGAGGAAGAACAGCAGCAGGAGAAGCAGCAGCAG CAGTAGCAGCAGCAGCAGCTGCAGGAGTAGAAGGAGAAGGAGAAGAAATA AGAGCAACAGCCGCAACAGAATCCGAGGTCGACCATATCCGCCGTGAGAA CTACGCCATGGTCTCCTCCATCATCACCTGCCTCTCCTCCTCCTCCTCCT CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCTCCA CCACCCCCCCTCCTTGAAGCAGCCCCCTTCCTCTTACATCTCTCCCAGCG CGCCTTCCAAAAAGTCGGCCACAGCGCCAACAGCAACATGCCTTTCCTCC TTCCCTCCCTCCCCTTCACCCTTCGCGCGCAGGTCTCTGCCCTGACGATG CCTGCCCGTCCTCCCTCCCTCAAGAAGTACGCTCGACACGACCCGAGCAA GCAAGCCCTAAAAGTGGATCGTCGCTACACGGTGGAGGAAGGGGGGGAGG ATGGGGGGGAGGGAGGGAGGGAGTTGGAGAGGAGGGAGATGGTGAAGGGC TATCGGTATGGTGACGTGTACCTGCCCGTGGACTCGACGGCGGAGAGAAG GCTCAAGTTGGAGGGGAGGGAGGGAGGGAAGGAGGGAGGGGGGGAGGGGG GGGCGGGACGGTGGTTGAGATGCGGGTGCTAG back to topprotein sequence of NO03G00600.1 >NO03G00600.1-protein ID=NO03G00600.1-protein|Name=NO03G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=517bp MSQAWVFLLDGSVSMGDAYTHPSLLEALPSALQDPPPTKLQVAQEITTLL FAAQAVAEAGRKSKKCEAGIYVFGTDDTAHPLQELGEGYEHLLEVAPIQH LHLGCVAEARRLLPSQKGVEGDLLSGLILAVDRLRFRTGMMGKKCERHLV VVTDACSRLSSTDGLEETVQQLIEMDVRLQFVGFNLPSFTSSEDSSSSSS AAATAAVSVKKEKEGEEKKKKKKEEGEEEEGGGTGGGGGGGGAAAAGEGG GGGGGGGEGGGEGGRRRAAAAAEAAAGGEEGEGEGGGGGGEEEGGGGRTA AGEAAAAVAAAAAAGVEGEGEEIRATAATESEVDHIRRENYAMVSSIITC LSSSSSSSSSSSSSSSFSSSSSPPPPLLEAAPFLLHLSQRAFQKVGHSAN SNMPFLLPSLPFTLRAQVSALTMPARPPSLKKYARHDPSKQALKVDRRYT VEEGGEDGGEGGRELERREMVKGYRYGDVYLPVDSTAERRLKLEGREGGK EGGGEGGAGRWLRCGC* back to topmRNA from alignment at chr3:194556..196452+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G00600.1 ID=NO03G00600.1|Name=NO03G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1897bp|location=Sequence derived from alignment at chr3:194556..196452+ (Nannochloropsis oceanica) ACAGTGCACCAAAAAGCACACCGCCCACGCCATGTCACAAGCATGGGTCT
TCTTGCTTGACGGCAGCGTGAGCATGGGCGACGCCTACACGCATCCCTCC
CTCCTGGAGGCCTTGCCTTCAGCTTTGCAAGACCCTCCTCCCACCAAGCT
TCAGGTGGCCCAAGAAATAACCACCCTCCTCTTTGCCGCACAAGCCGTGG
CTGAAGCAGGCAAGTCTGGAATGAGATGAGACGGGATCAATGGGAGGGTG
CTGGACGAGAGATGGAAAATAAATTGCAGGAGCGTCAAGAAAGCGCATAC
GGGAAGTCCCGTTATCCTGATGCGTCTTCACTCACAAATTTCACAAATCC
ATGTAATCGCCCTCACCCCCCCCTCTCTCTTTCACACAGGGAGGAAAAGC
AAAAAATGTGAGGCGGGAATCTACGTATTCGGGACCGACGATACCGCCCA
CCCCCTGCAAGAGCTTGGGGAGGGCTACGAGCATCTGCTAGAAGTTGCCC
CTATCCAACATCTACACCTGGGATGTGTGGCTGAGGCCCGCCGTCTCCTT
CCCTCCCAGAAGGGGGTGGAAGGAGATCTACTTTCCGGGCTCATCCTGGC
AGTGGACCGTTTGAGGTTCAGGACGGGGATGATGGGCAAGAAGTGTGAGC
GGCATCTGGTGGTGGTGACTGATGCTTGCTCGCGTTTGTCGAGCACGGAC
GGGCTGGAAGAGACGGTGCAACAGGTCGGGGAGGGAGGGAGGGAGGGAGA
GAGAGAGGGAGGATTTTTTTTAAATGAGCTGGATTTGAGCAGGCTTTGTC
GACCACTGTCCTCATTCCATCCCTCCCCCCCTTCTCCCTCCCTTCCTGAA
CCCCGCCAGCTGATCGAGATGGACGTGCGCTTACAATTTGTCGGCTTCAA
CCTCCCGTCATTCACCTCCTCCGAAGATTCCTCCTCCTCCTCTTCCGCCG
CCGCCACCGCCGCCGTCTCCGTCAAAAAAGAGAAAGAAGGAGAGGAGAAA
AAAAAGAAAAAAAAAGAAGAAGGAGAAGAGGAAGAAGGAGGAGGAACAGG
AGGAGGAGGAGGAGGAGGAGGAGCAGCAGCAGCAGGAGAAGGAGGAGGGG
GGGGAGGAGGAGGAGGAGAAGGAGGAGGAGAAGGAGGAAGAAGAAGAGCA
GCAGCAGCAGCAGAAGCAGCAGCAGGAGGAGAAGAAGGAGAAGGAGAAGG
AGGTGGAGGAGGAGGAGAAGAAGAAGGAGGAGGAGGAAGAACAGCAGCAG
GAGAAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCTGCAGGAGTAGAAGGA
GAAGGAGAAGAAATAAGAGCAACAGCCGCAACAGAATCCGAGGTCGACCA
TATCCGCCGTGAGAACTACGCCATGGTCTCCTCCATCATCACCTGCCTCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCC
TCCTCCTCCTCTCCACCACCCCCCCTCCTTGAAGCAGCCCCCTTCCTCTT
ACATCTCTCCCAGCGCGCCTTCCAAAAAGTCGGCCACAGCGCCAACAGCA
ACATGCCTTTCCTCCTTCCCTCCCTCCCCTTCACCCTTCGCGCGCAGGTC
TCTGCCCTGACGATGCCTGCCCGTCCTCCCTCCCTCAAGAAGTACGCTCG
ACACGACCCGAGCAAGCAAGCCCTAAAAGTGGATCGTCGCTACACGGTGG
AGGAAGGGGGGGAGGATGGGGGGGAGGGAGGGAGGGAGTTGGAGAGGAGG
GAGATGGTGAAGGGCTATCGGTATGGTGACGTGTACCTGCCCGTGGACTC
GACGGCGGAGAGAAGGCTCAAGTTGGAGGGGAGGGAGGGAGGGAAGGAGG
GAGGGGGGGAGGGGGGGGCGGGACGGTGGTTGAGATGCGGGTGCTAG back to topCoding sequence (CDS) from alignment at chr3:194556..196452+ >NO03G00600.1 ID=NO03G00600.1|Name=NO03G00600.1|organism=Nannochloropsis oceanica|type=CDS|length=1551bp|location=Sequence derived from alignment at chr3:194556..196452+ (Nannochloropsis oceanica) ATGTCACAAGCATGGGTCTTCTTGCTTGACGGCAGCGTGAGCATGGGCGA CGCCTACACGCATCCCTCCCTCCTGGAGGCCTTGCCTTCAGCTTTGCAAG ACCCTCCTCCCACCAAGCTTCAGGTGGCCCAAGAAATAACCACCCTCCTC TTTGCCGCACAAGCCGTGGCTGAAGCAGGGAGGAAAAGCAAAAAATGTGA GGCGGGAATCTACGTATTCGGGACCGACGATACCGCCCACCCCCTGCAAG AGCTTGGGGAGGGCTACGAGCATCTGCTAGAAGTTGCCCCTATCCAACAT CTACACCTGGGATGTGTGGCTGAGGCCCGCCGTCTCCTTCCCTCCCAGAA GGGGGTGGAAGGAGATCTACTTTCCGGGCTCATCCTGGCAGTGGACCGTT TGAGGTTCAGGACGGGGATGATGGGCAAGAAGTGTGAGCGGCATCTGGTG GTGGTGACTGATGCTTGCTCGCGTTTGTCGAGCACGGACGGGCTGGAAGA GACGGTGCAACAGCTGATCGAGATGGACGTGCGCTTACAATTTGTCGGCT TCAACCTCCCGTCATTCACCTCCTCCGAAGATTCCTCCTCCTCCTCTTCC GCCGCCGCCACCGCCGCCGTCTCCGTCAAAAAAGAGAAAGAAGGAGAGGA GAAAAAAAAGAAAAAAAAAGAAGAAGGAGAAGAGGAAGAAGGAGGAGGAA CAGGAGGAGGAGGAGGAGGAGGAGGAGCAGCAGCAGCAGGAGAAGGAGGA GGGGGGGGAGGAGGAGGAGGAGAAGGAGGAGGAGAAGGAGGAAGAAGAAG AGCAGCAGCAGCAGCAGAAGCAGCAGCAGGAGGAGAAGAAGGAGAAGGAG AAGGAGGTGGAGGAGGAGGAGAAGAAGAAGGAGGAGGAGGAAGAACAGCA GCAGGAGAAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCTGCAGGAGTAGA AGGAGAAGGAGAAGAAATAAGAGCAACAGCCGCAACAGAATCCGAGGTCG ACCATATCCGCCGTGAGAACTACGCCATGGTCTCCTCCATCATCACCTGC CTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTT CTCCTCCTCCTCCTCTCCACCACCCCCCCTCCTTGAAGCAGCCCCCTTCC TCTTACATCTCTCCCAGCGCGCCTTCCAAAAAGTCGGCCACAGCGCCAAC AGCAACATGCCTTTCCTCCTTCCCTCCCTCCCCTTCACCCTTCGCGCGCA GGTCTCTGCCCTGACGATGCCTGCCCGTCCTCCCTCCCTCAAGAAGTACG CTCGACACGACCCGAGCAAGCAAGCCCTAAAAGTGGATCGTCGCTACACG GTGGAGGAAGGGGGGGAGGATGGGGGGGAGGGAGGGAGGGAGTTGGAGAG GAGGGAGATGGTGAAGGGCTATCGGTATGGTGACGTGTACCTGCCCGTGG ACTCGACGGCGGAGAGAAGGCTCAAGTTGGAGGGGAGGGAGGGAGGGAAG GAGGGAGGGGGGGAGGGGGGGGCGGGACGGTGGTTGAGATGCGGGTGCTA G back to top
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