NO03G00530.1, NO03G00530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00530.1
Unique NameNO03G00530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1512
Alignment locationchr3:163440..165110 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:163440..165110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G00530.1 vs.
Match: EWM29500.1 (Armadillo-like helical [Nannochloropsis gaditana])

HSP 1 Score: 259.6 bits (662), Expect = 2.000e-65
Identity = 171/381 (44.88%), Postives = 218/381 (57.22%), Query Frame = 0 
Query:   24 LSSCSLLLLLLLLLPSPTSAATGENEEKQICKEENVFHATNEWQPIPRDASVPPGLHVKLDLSTGERLGKLLDADETAQAAATGAAGTAVSTSSTFIPLNQNKSQNGGGLLDSITIKNTPEEALDAASGPLPTRRETMLKVISNLPPVERASMGVDALLATRP----------PDLSHPEEEEVFWQKVEGLWEERQAMLQQAYDNMLKPAEELGRLIQVLREGAGEEGLLLQALIELEDWLSDVDMAQDFYTLGGWPL----LGWVLEKGKEGEGDSALTLLVEILREAAEGGVEGEEREHGEELLRKTVYALTSAARGNALVQSQLL---KEGGLEVMGRLLASSPSSSSSSSGQRALRLKLVAFAHDMILEARQGQEA 388
            L S SLL+ L++   +   AA    +E     EENVF AT EWQ IP  ASVPPGLHVKLDLSTGERLGKL+D  E       G      +  +T +   ++      G+LDS+ IKNTPEE L+A+ GP  +RR TMLKV+S LPP ERASMG+D+LLA+RP           +    EEE  FW++VE LW ERQ +L QAY+NMLKPAEELGRLI VL+EG  EE  +++AL+ELEDWLSDVDMAQDFYTLGGWPL    LGW                         EGG     RE G E+  +  + + +A + +   Q+ +L   KEGG   + RLL       + + G+     +L+  A   +  A +G  A
Sbjct:   47 LCSISLLVFLIVSFAAEQPAAKISPQE-----EENVFVATTEWQAIPPGASVPPGLHVKLDLSTGERLGKLMDGPERQALRPAGQRKEESALQATDVAGFKSNKTGAKGILDSVVIKNTPEETLEASQGPPLSRRGTMLKVLSGLPPQERASMGIDSLLASRPRAGEALGEEVVEGEEREEERAFWKQVETLWAERQDLLLQAYENMLKPAEELGRLIGVLKEGGEEE--VMRALMELEDWLSDVDMAQDFYTLGGWPLLVSKLGW-------------------------EGG-----REGGREVQWRAAWVVGNAVKNDRHFQAWVLEGGKEGGASALTRLLTICREGGTEAWGEGEEEEELLRKAVYAVTSAARGNPA 390
The following BLAST results are available for this feature:
BLAST of NO03G00530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29500.12.000e-6544.88Armadillo-like helical [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00530NO03G00530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00530.1NO03G00530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00530.1.cds1NO03G00530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00530.1.cds2NO03G00530.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00530.1.cds3NO03G00530.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00530.1 ID=NO03G00530.1|Name=NO03G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1512bp
ATGGCGCGCTCATGGCCACATCAACCCTGTCGTCCTTCTTGCAACACAGT
CCTCGTCGTCCTCTCCACCCTCTCCAGCTGCTCCCTCCTCCTCCTCCTCC
TCCTCCTCCTACCCTCCCCCACCAGCGCAGCAACGGGAGAGAATGAAGAA
AAGCAAATCTGCAAGGAAGAAAACGTCTTTCATGCTACCAACGAATGGCA
GCCCATCCCACGCGATGCATCGGTCCCTCCAGGGTTGCACGTGAAGCTGG
ATTTGTCGACGGGCGAGAGACTGGGCAAGCTCCTAGACGCAGACGAGACA
GCACAAGCAGCAGCAACAGGAGCTGCTGGAACTGCCGTCAGCACTTCCTC
AACTTTCATACCCCTCAACCAGAACAAGTCACAGAATGGAGGAGGGCTGC
TTGATAGCATTACCATCAAAAACACCCCGGAAGAGGCCTTGGACGCGGCC
AGTGGCCCCCTTCCCACTCGCCGGGAAACCATGCTCAAAGTCATCTCCAA
CCTCCCCCCTGTCGAGCGCGCCAGCATGGGTGTCGATGCCCTCCTTGCCA
CTCGTCCTCCTGACTTGTCGCACCCCGAAGAAGAAGAAGTGTTTTGGCAG
AAGGTGGAGGGTTTGTGGGAGGAAAGGCAAGCGATGCTGCAGCAGGCATA
TGACAACATGCTCAAGCCCGCGGAGGAACTGGGGAGGTTGATACAGGTGC
TGAGGGAGGGAGCTGGGGAGGAAGGGTTGCTACTACAAGCATTGATAGAA
TTGGAAGACTGGTTGTCGGATGTGGACATGGCTCAGGACTTTTATACCTT
GGGCGGGTGGCCTTTATTGGGATGGGTTTTGGAGAAAGGGAAGGAGGGAG
AGGGGGACTCTGCGTTGACGCTTTTGGTGGAAATACTGCGGGAGGCGGCG
GAGGGCGGGGTGGAGGGGGAGGAGAGGGAGCACGGGGAGGAGTTGTTGAG
GAAGACCGTATATGCCTTGACATCGGCAGCAAGGGGAAACGCTTTGGTGC
AATCCCAATTGCTCAAGGAGGGGGGGTTGGAGGTCATGGGTCGCCTCCTC
GCCTCCTCCCCTTCCTCGTCCTCGTCCTCGAGTGGACAGCGGGCTCTTCG
ATTGAAGCTTGTTGCCTTTGCTCATGACATGATACTGGAGGCCAGACAAG
GACAGGAAGCCAGGAGTGACGACGCCGACCTGGTGCCAGGGGGCGTTGGT
CTTGCTGGAGGAGGTGGCGAGGGAGGGAGGGAAGGGGGAGGGAGTACAGG
GGCGCAGGCGGTGGAGACGGAAAAGGTGGTGGAGGCCTTAGGACTTTTGC
ACGGTGGGTGCAGTGGGCACGGGCATTGGGGCGGAAGGGAGGTGGTGGGG
AGGGTGGTTAGGAGAGCAAGGGAGGAGGTAGGGCGGGAGAGGTGGGCGGA
GGGAGTCAACCCCGAATACCACCAGGAGTTGTTGGGGATGCTGGAAGAGC
TGGCAAGGGAAGTGGAGGGGGAAAGGGGGGGGGAAGCAGGGAGGGAAAGG
GTGGAGTTGTAG
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protein sequence of NO03G00530.1

>NO03G00530.1-protein ID=NO03G00530.1-protein|Name=NO03G00530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=504bp
MARSWPHQPCRPSCNTVLVVLSTLSSCSLLLLLLLLLPSPTSAATGENEE
KQICKEENVFHATNEWQPIPRDASVPPGLHVKLDLSTGERLGKLLDADET
AQAAATGAAGTAVSTSSTFIPLNQNKSQNGGGLLDSITIKNTPEEALDAA
SGPLPTRRETMLKVISNLPPVERASMGVDALLATRPPDLSHPEEEEVFWQ
KVEGLWEERQAMLQQAYDNMLKPAEELGRLIQVLREGAGEEGLLLQALIE
LEDWLSDVDMAQDFYTLGGWPLLGWVLEKGKEGEGDSALTLLVEILREAA
EGGVEGEEREHGEELLRKTVYALTSAARGNALVQSQLLKEGGLEVMGRLL
ASSPSSSSSSSGQRALRLKLVAFAHDMILEARQGQEARSDDADLVPGGVG
LAGGGGEGGREGGGSTGAQAVETEKVVEALGLLHGGCSGHGHWGGREVVG
RVVRRAREEVGRERWAEGVNPEYHQELLGMLEELAREVEGERGGEAGRER
VEL*
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mRNA from alignment at chr3:163440..165110-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00530.1 ID=NO03G00530.1|Name=NO03G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1671bp|location=Sequence derived from alignment at chr3:163440..165110- (Nannochloropsis oceanica)
ATGGCGCGCTCATGGCCACATCAACCCTGTCGTCCTTCTTGCAACACAGT
CCTCGTCGTCCTCTCCACCCTCTCCAGCTGCTCCCTCCTCCTCCTCCTCC
TCCTCCTCCTACCCTCCCCCACCAGCGCAGCAACGGGAGAGAATGAAGAA
AAGCAAATCTGCAAGGAAGAAAACGTCTTTCATGCTACCAACGAATGGCA
GCCCATCCCACGCGATGCATCGGTCCCTCCAGGGTTGCACGTGAAGCTGG
ATTTGTCGACGGGCGAGAGACTGGGCAAGCTCCTAGACGCAGACGAGACA
GCACAAGCAGCAGCAACAGGAGCTGCTGGAACTGCCGTCAGCACTTCCTC
AACTTTCATACCCCTCAACCAGAACAAGTCACAGAATGGAGGAGGGCTGC
TTGATAGCATTACCATCAAAAACACCCCGGAAGAGGCCTTGGACGCGGCC
AGTGGCCCCCTTCCCACTCGCCGGGAAACCATGCTCAAAGTCATCTCCAA
CCTCCCCCCTGTCGAGCGCGCCAGCATGGGTGTCGATGCCCTCCTTGCCA
CTCGTCCTCCTGACTTGTCGCACCCCGAAGAAGAAGAAGTGTTTTGGCAG
AAGGTGGAGGGTTTGTGGGAGGAAAGGCAAGCGATGCTGCAGCAGGCATA
TGACAACATGCTCAAGCCCGCGGAGGAACTGGGGAGGTTGATACAGGTGC
TGAGGGAGGGAGCTGGGGAGGAAGGGTTGCTACTACAAGCATTGATAGAA
TTGGAAGACTGGTTGTCGGATGTGGACATGGCTCAGGACTTTTATACCTT
GGGCGGGTGGCCTTTATTGGTGGGGAGGCTAGGGAGGGGGGAGGGAAGGA
GGTGAGGTGGAGAGCGGCGTGGGCGGTGGGGAATGCGGTGAAGAATGATA
GGGGATTTCAGGGATGGGTTTTGGAGAAAGGGAAGGAGGGAGAGGGGGAC
TCTGCGTTGACGCTTTTGGTGGAAATACTGCGGGAGGCGGCGGAGGGCGG
GGTGGAGGGGGAGGAGAGGGAGCACGGGGAGGAGTTGTTGAGGAAGACCG
TATATGCCTTGACATCGGCAGCAAGGGGAAACGCTTTGGTGCAATCCCAA
TTGCTCAAGGAGGGGGGGTTGGAGGTCATGGGTCGCCTCCTCGCCTCCTC
CCCTTCCTCGTCCTCGTCCTCGAGTGGACAGCGGGCTCTTCGATTGAAGC
TTGTTGCCTTTGCTCATGACATGATACTGGAGGCCAGACAAGGACAGGAA
GCCAGGTGGGAGGTAGAGGAGGCGCGACATCCTCCCTCCCCCCCCCCTCC
CTCCATGCCTCCCTTTTGGAAGGAGTGACGACGCCGACCTGGTGCCAGGG
GGCGTTGGTCTTGCTGGAGGAGGTGGCGAGGGAGGGAGGGAAGGGGGAGG
GAGTACAGGGGCGCAGGCGGTGGAGACGGAAAAGGTGGTGGAGGCCTTAG
GACTTTTGCACGGTGGGTGCAGTGGGCACGGGCATTGGGGCGGAAGGGAG
GTGGTGGGGAGGGTGGTTAGGAGAGCAAGGGAGGAGGTAGGGCGGGAGAG
GTGGGCGGAGGGAGTCAACCCCGAATACCACCAGGAGTTGTTGGGGATGC
TGGAAGAGCTGGCAAGGGAAGTGGAGGGGGAAAGGGGGGGGGAAGCAGGG
AGGGAAAGGGTGGAGTTGTAG
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Coding sequence (CDS) from alignment at chr3:163440..165110-

>NO03G00530.1 ID=NO03G00530.1|Name=NO03G00530.1|organism=Nannochloropsis oceanica|type=CDS|length=1512bp|location=Sequence derived from alignment at chr3:163440..165110- (Nannochloropsis oceanica)
ATGGCGCGCTCATGGCCACATCAACCCTGTCGTCCTTCTTGCAACACAGT
CCTCGTCGTCCTCTCCACCCTCTCCAGCTGCTCCCTCCTCCTCCTCCTCC
TCCTCCTCCTACCCTCCCCCACCAGCGCAGCAACGGGAGAGAATGAAGAA
AAGCAAATCTGCAAGGAAGAAAACGTCTTTCATGCTACCAACGAATGGCA
GCCCATCCCACGCGATGCATCGGTCCCTCCAGGGTTGCACGTGAAGCTGG
ATTTGTCGACGGGCGAGAGACTGGGCAAGCTCCTAGACGCAGACGAGACA
GCACAAGCAGCAGCAACAGGAGCTGCTGGAACTGCCGTCAGCACTTCCTC
AACTTTCATACCCCTCAACCAGAACAAGTCACAGAATGGAGGAGGGCTGC
TTGATAGCATTACCATCAAAAACACCCCGGAAGAGGCCTTGGACGCGGCC
AGTGGCCCCCTTCCCACTCGCCGGGAAACCATGCTCAAAGTCATCTCCAA
CCTCCCCCCTGTCGAGCGCGCCAGCATGGGTGTCGATGCCCTCCTTGCCA
CTCGTCCTCCTGACTTGTCGCACCCCGAAGAAGAAGAAGTGTTTTGGCAG
AAGGTGGAGGGTTTGTGGGAGGAAAGGCAAGCGATGCTGCAGCAGGCATA
TGACAACATGCTCAAGCCCGCGGAGGAACTGGGGAGGTTGATACAGGTGC
TGAGGGAGGGAGCTGGGGAGGAAGGGTTGCTACTACAAGCATTGATAGAA
TTGGAAGACTGGTTGTCGGATGTGGACATGGCTCAGGACTTTTATACCTT
GGGCGGGTGGCCTTTATTGGGATGGGTTTTGGAGAAAGGGAAGGAGGGAG
AGGGGGACTCTGCGTTGACGCTTTTGGTGGAAATACTGCGGGAGGCGGCG
GAGGGCGGGGTGGAGGGGGAGGAGAGGGAGCACGGGGAGGAGTTGTTGAG
GAAGACCGTATATGCCTTGACATCGGCAGCAAGGGGAAACGCTTTGGTGC
AATCCCAATTGCTCAAGGAGGGGGGGTTGGAGGTCATGGGTCGCCTCCTC
GCCTCCTCCCCTTCCTCGTCCTCGTCCTCGAGTGGACAGCGGGCTCTTCG
ATTGAAGCTTGTTGCCTTTGCTCATGACATGATACTGGAGGCCAGACAAG
GACAGGAAGCCAGGAGTGACGACGCCGACCTGGTGCCAGGGGGCGTTGGT
CTTGCTGGAGGAGGTGGCGAGGGAGGGAGGGAAGGGGGAGGGAGTACAGG
GGCGCAGGCGGTGGAGACGGAAAAGGTGGTGGAGGCCTTAGGACTTTTGC
ACGGTGGGTGCAGTGGGCACGGGCATTGGGGCGGAAGGGAGGTGGTGGGG
AGGGTGGTTAGGAGAGCAAGGGAGGAGGTAGGGCGGGAGAGGTGGGCGGA
GGGAGTCAACCCCGAATACCACCAGGAGTTGTTGGGGATGCTGGAAGAGC
TGGCAAGGGAAGTGGAGGGGGAAAGGGGGGGGGAAGCAGGGAGGGAAAGG
GTGGAGTTGTAG
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Synonyms
Publications