NO03G00480.1, NO03G00480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00480.1
Unique NameNO03G00480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1038
Alignment locationchr3:148396..149745 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:148396..149745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO03G00480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00480NO03G00480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00480.1NO03G00480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00480.1.cds1NO03G00480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00480.1.cds2NO03G00480.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00480.1 ID=NO03G00480.1|Name=NO03G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1038bp
ATGCGCTGTTATAATCAGCATGAATTTCCAGAGCCGCGTTTATTTATCTC
CTCTACCTTGTCCTCCTCATCTTTCTCCACCTTTTCTTCATCTTCCTCCG
CGTCCTCCTCTTCTCCCTCCTGCTCCCCCACCAGAACTTGCCCTCTCCCT
TACTCCTCTTCCACCTCATCACCCCTCGCAGTGCGCCATACAACGAGTCA
ACACTCGCTCTCTCCAGTCCGGGCGTTTTCTTCGTTATCGCCACCCAGTC
TGGCGACGACGAAGGAAAGAGAAGAAAGGGAGGAGGAGCAAGAGGAGGAT
GAAGAAGTCAGACCATCATTTCCGCGCCGCCCCCCCCAACCCCACCACCA
CCGACAAGAGCAGCAGCAGCAGCAACAGCAACAGTCGCAACTGCGGCCTC
ATCGATACAACCCCCCGCCATCCTCTTACTTTTTTTTCGCGCCTCGCGAA
GCGGCTGGAGGAGCCGACTCTATAAACTCCGCAGCCACAGCAGCAGCAGC
AACAGCAGCAGCCACAGCAGCAGCAGCTGTAGCAGCAACGGCAGACGGAC
CAGTGTCGAACCCTCAGCATTCATCGCAACTCCAACAGAAGAATCTTTCC
CACCACCATTTGCCGTTGCAGCAGCGGCAGCAGCAACAGCAGCAGCAGGA
GAAGCACCCCTACCCCTTCCACTCCACCAGTCGGGCATCCATCCATCCCT
TTCTCCATGCCACGCGTGATCGGGTGCATCATTGCCAAACCCCGCTCACA
CAACAGCACCACCACCGCCACTATCACAATCATCACCACTACCAACAACT
CCCGCGTTGCCATCTCCCTGCTGCTGTTGTTGCAACAGCTGCTGCTGCTA
CTTCTATTACAGGTCCGTCCTACCATCGTCAGCAGCAGCCGCAGCAGCAG
CAGCAGCATCCACAACAACAACTGCAGCACCACCGCCTCCTATGGCAGCC
TAACGCTTCTTCTGTTGCTCCTCTTCCTCCCACCCGATTTCACCTGCAGG
ATCTGCGACATGCAGACATATTTCAACCACATGCGTAA
back to top

protein sequence of NO03G00480.1

>NO03G00480.1-protein ID=NO03G00480.1-protein|Name=NO03G00480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MRCYNQHEFPEPRLFISSTLSSSSFSTFSSSSSASSSSPSCSPTRTCPLP
YSSSTSSPLAVRHTTSQHSLSPVRAFSSLSPPSLATTKEREEREEEQEED
EEVRPSFPRRPPQPHHHRQEQQQQQQQQSQLRPHRYNPPPSSYFFFAPRE
AAGGADSINSAATAAAATAAATAAAAVAATADGPVSNPQHSSQLQQKNLS
HHHLPLQQRQQQQQQQEKHPYPFHSTSRASIHPFLHATRDRVHHCQTPLT
QQHHHRHYHNHHHYQQLPRCHLPAAVVATAAAATSITGPSYHRQQQPQQQ
QQHPQQQLQHHRLLWQPNASSVAPLPPTRFHLQDLRHADIFQPHA*
back to top

mRNA from alignment at chr3:148396..149745-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00480.1 ID=NO03G00480.1|Name=NO03G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1350bp|location=Sequence derived from alignment at chr3:148396..149745- (Nannochloropsis oceanica)
ATGCGCTGTTATAATCAGCATGAATTTCCAGAGCCGCGTTTATTTATCTC CTCTACCTTGTCCTCCTCATCTTTCTCCACCTTTTCTTCATCTTCCTCCG CGTCCTCCTCTTCTCCCTCCTGCTCCCCCACCAGAACTTGCCCTCTCCCT TACTCCTCTTCCACCTCATCACCCCTCGCAGTGCGCCATACAACGAGTCA ACACTCGCTCTCTCCAGTCCGGGCGTTTTCTTCGTTATCGCCACCCAGTC TGGCGACGACGAAGGAAAGAGAAGAAAGGGAGGAGGAGCAAGAGGAGGAT GAAGAAGTCAGGTTAGATGCCCTCTCTTCTCATTCAAAAATAGAAGGGGG GTACGCAAGGGAGGGAGAATATGGTATTTGCCTGACAAGCACAAGTGGGG AAGCGGCTGGCCCAGGTGTTCATCAAGACAATGGCACGTTCCATGGACAG GGAGGGAGGGAGGAAGGGAAGGAGGAGGAACGAGCGAGTGCGGGTGTTTG CGAGAAAGGCGTGACAGAAGGTTGTGTTGCAGGGCCTGGGTATGAAACGG CAATGCAACCAACGCGACAAAGGCCGTCCTTCTTGCCCTGCTCTAGGGCA ATCATACCTTCTTCATTCTTCAGACCATCATTTCCGCGCCGCCCCCCCCA ACCCCACCACCACCGACAAGAGCAGCAGCAGCAGCAACAGCAACAGTCGC AACTGCGGCCTCATCGATACAACCCCCCGCCATCCTCTTACTTTTTTTTC GCGCCTCGCGAAGCGGCTGGAGGAGCCGACTCTATAAACTCCGCAGCCAC AGCAGCAGCAGCAACAGCAGCAGCCACAGCAGCAGCAGCTGTAGCAGCAA CGGCAGACGGACCAGTGTCGAACCCTCAGCATTCATCGCAACTCCAACAG AAGAATCTTTCCCACCACCATTTGCCGTTGCAGCAGCGGCAGCAGCAACA GCAGCAGCAGGAGAAGCACCCCTACCCCTTCCACTCCACCAGTCGGGCAT CCATCCATCCCTTTCTCCATGCCACGCGTGATCGGGTGCATCATTGCCAA ACCCCGCTCACACAACAGCACCACCACCGCCACTATCACAATCATCACCA CTACCAACAACTCCCGCGTTGCCATCTCCCTGCTGCTGTTGTTGCAACAG CTGCTGCTGCTACTTCTATTACAGGTCCGTCCTACCATCGTCAGCAGCAG CCGCAGCAGCAGCAGCAGCATCCACAACAACAACTGCAGCACCACCGCCT CCTATGGCAGCCTAACGCTTCTTCTGTTGCTCCTCTTCCTCCCACCCGAT TTCACCTGCAGGATCTGCGACATGCAGACATATTTCAACCACATGCGTAA
back to top

Coding sequence (CDS) from alignment at chr3:148396..149745-

>NO03G00480.1 ID=NO03G00480.1|Name=NO03G00480.1|organism=Nannochloropsis oceanica|type=CDS|length=1038bp|location=Sequence derived from alignment at chr3:148396..149745- (Nannochloropsis oceanica)
ATGCGCTGTTATAATCAGCATGAATTTCCAGAGCCGCGTTTATTTATCTC
CTCTACCTTGTCCTCCTCATCTTTCTCCACCTTTTCTTCATCTTCCTCCG
CGTCCTCCTCTTCTCCCTCCTGCTCCCCCACCAGAACTTGCCCTCTCCCT
TACTCCTCTTCCACCTCATCACCCCTCGCAGTGCGCCATACAACGAGTCA
ACACTCGCTCTCTCCAGTCCGGGCGTTTTCTTCGTTATCGCCACCCAGTC
TGGCGACGACGAAGGAAAGAGAAGAAAGGGAGGAGGAGCAAGAGGAGGAT
GAAGAAGTCAGACCATCATTTCCGCGCCGCCCCCCCCAACCCCACCACCA
CCGACAAGAGCAGCAGCAGCAGCAACAGCAACAGTCGCAACTGCGGCCTC
ATCGATACAACCCCCCGCCATCCTCTTACTTTTTTTTCGCGCCTCGCGAA
GCGGCTGGAGGAGCCGACTCTATAAACTCCGCAGCCACAGCAGCAGCAGC
AACAGCAGCAGCCACAGCAGCAGCAGCTGTAGCAGCAACGGCAGACGGAC
CAGTGTCGAACCCTCAGCATTCATCGCAACTCCAACAGAAGAATCTTTCC
CACCACCATTTGCCGTTGCAGCAGCGGCAGCAGCAACAGCAGCAGCAGGA
GAAGCACCCCTACCCCTTCCACTCCACCAGTCGGGCATCCATCCATCCCT
TTCTCCATGCCACGCGTGATCGGGTGCATCATTGCCAAACCCCGCTCACA
CAACAGCACCACCACCGCCACTATCACAATCATCACCACTACCAACAACT
CCCGCGTTGCCATCTCCCTGCTGCTGTTGTTGCAACAGCTGCTGCTGCTA
CTTCTATTACAGGTCCGTCCTACCATCGTCAGCAGCAGCCGCAGCAGCAG
CAGCAGCATCCACAACAACAACTGCAGCACCACCGCCTCCTATGGCAGCC
TAACGCTTCTTCTGTTGCTCCTCTTCCTCCCACCCGATTTCACCTGCAGG
ATCTGCGACATGCAGACATATTTCAACCACATGCGTAA
back to top
Synonyms
Publications