NO03G00430.1, NO03G00430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00430.1
Unique NameNO03G00430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1614
Alignment locationchr3:136021..139118 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:136021..139118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G00430.1 vs.
Match: CBJ30666.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 415.6 bits (1067), Expect = 1.700e-112
Identity = 228/351 (64.96%), Postives = 274/351 (78.06%), Query Frame = 0
Query:   16 GTDKGKKDGDKKKSEEETATSILTTGQLAADEIEVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDVVNSFAVPFEEDLKNPLIWYLDHNYLESMFHMSKKINAKERIVGFYSTGPKIKENDLQIDELFRRFCSSPVFVIIDVRPGVEGIPVMAYRTKEEVEGDGKEIQRTFEHIPSSVGALEAEEVGVEHLLRDINDPSVSTLANQVKHKLVALSGLRERLEEMQTYLQLVLAQKIPVNNQIIYNMQTIFNLLPNLNVGELVKGLMVKANDMHFIIYLSSLIRAIVALHGVVQNKIDFS--EGEEGGKEGGKKKEKEGEKEGKEEEGKEKGKEGGKEGGKGA 365
            G + G KD   K  + E A+ ++  G       EV+VHPLVLLSTVDHYNRVA+D +KRVVGVLLG+ ++G +DV NSFAVPFEED++NP IWYLDHN+LE MF M KK+ AKERI GFYSTGPKI+ENDL I ELF+RFC +PV+VIIDVRP VEGIP  AY T EEVE DGKEIQ+TF+H+ SSVGALEAEEVGVEHLLRDINDPSVS+LANQ+KHKL ALSGL+ +LEEMQTYL+ VL  K+PVNNQI+YNMQ IFNLLPNLNV ELV+ ++VK NDMH +IY+S+LIR++VALH +V NKI +   +G E GK+    K +EGE    ++E   KG+       KGA
Sbjct:   44 GKEGGGKDDKAKSGDAEVASVVVPKGIE-----EVVVHPLVLLSTVDHYNRVARDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDVRNPNIWYLDHNFLEGMFAMFKKVAAKERICGFYSTGPKIRENDLAIAELFKRFCPNPVYVIIDVRPDVEGIPTTAYVTAEEVEADGKEIQKTFKHVASSVGALEAEEVGVEHLLRDINDPSVSSLANQIKHKLSALSGLKSKLEEMQTYLKNVLDGKLPVNNQIVYNMQNIFNLLPNLNVDELVRSMLVKTNDMHLVIYVSALIRSVVALHDLVNNKIRYKDMDGLEAGKDETGTKPEEGEDAAAKKEA-TKGEPQKPGSNKGA 388          
The following BLAST results are available for this feature:
BLAST of NO03G00430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ30666.11.700e-11264.96conserved unknown protein [Ectocarpus siliculosus][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00430NO03G00430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00430.1NO03G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00430.1.cds1NO03G00430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00430.1.cds2NO03G00430.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00430.1.cds3NO03G00430.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00430.1.cds4NO03G00430.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00430.1.cds5NO03G00430.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00430.1.cds6NO03G00430.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00430.1.cds7NO03G00430.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00430.1.cds8NO03G00430.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00430.1.cds9NO03G00430.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00430.1 ID=NO03G00430.1|Name=NO03G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1614bp
GACTACCGACCGTCATCAGCGTCATCGCGAGCGCCACTGTCTCGCTCAAT
TTCTCAAGACTTCGTTCCGCCCACACTCTTCCTCACACTTACAAGCCCAG
CCCTCCCCTCTCCCGTGCGCTCGTACAATGCATAGGCGCGCCTCAATTTT
GGCCCTGCGACCAGGTGCCGTGATGCCTGGTTCGCCCCTTGTGTGCTCTA
CTTTGCCAGCTGCATCTCTTCCCCTGCCTACAGAAGCCCTAAGAAGGAGT
CCTTCAGCGAGCAATTAAACCAACCCTCCACCTACCCCCAACACCCTGCA
CAGAGCACAACGCCATGGCACCCATGGACGTGGAGAAGGAGAAGGACAAG
ACAAAGGCCGGGACGGACAAGGGCAAGAAAGACGGGGACAAAAAGAAATC
AGAGGAAGAGACTGCCACTTCCATTCTCACCACAGGGCAACTAGCAGCTG
ATGAGATCGAAGTCATCGTGCACCCCCTTGTCCTCCTCTCCACCGTCGAT
CACTACAACCGCGTGGCCAAGGACACCCGTAAACGTGTCGTGGGTGTCTT
GCTGGGCACGACATGGCGGGGTCGGATCGATGTGGTTAACTCGTTCGCAG
TGCCGTTCGAGGAGGACCTGAAGAATCCGCTCATCTGGTACCTGGATCAC
AACTATCTAGAGAGCATGTTCCATATGTCCAAGAAGATAAACGCAAAGGA
GCGCATCGTGGGCTTCTACAGCACCGGGCCCAAGATCAAGGAGAACGACC
TACAGATCGACGAGCTCTTCCGACGGTTCTGCTCCTCGCCCGTCTTTGTC
ATCATCGACGTCCGCCCGGGGGTGGAAGGGATTCCGGTCATGGCCTACAG
AACCAAGGAGGAGGTGGAGGGGGACGGCAAGGAGATTCAACGCACGTTCG
AGCATATCCCGTCCTCTGTGGGGGCGCTGGAGGCGGAGGAGGTCGGAGTG
GAACACCTCCTCCGCGATATCAACGATCCCTCCGTCTCCACCCTCGCCAA
CCAAGTGAAGCATAAGCTGGTTGCCCTCTCAGGCCTTCGGGAGCGCCTGG
AGGAAATGCAGACGTACCTCCAACTTGTGCTCGCGCAAAAAATACCCGTC
AACAACCAAATCATTTACAACATGCAGACCATATTCAACCTCTTGCCGAA
CCTTAACGTGGGAGAGCTCGTCAAGGGCCTAATGGTGAAGGCCAACGACA
TGCATTTCATCATCTACCTCTCCTCGCTCATTCGCGCCATTGTGGCTCTG
CACGGTGTCGTCCAAAACAAGATCGATTTCTCAGAAGGGGAGGAGGGCGG
GAAGGAGGGAGGGAAGAAGAAGGAGAAAGAAGGGGAGAAAGAGGGGAAGG
AGGAGGAGGGGAAAGAGAAGGGAAAGGAGGGAGGGAAGGAGGGAGGGAAG
GGAGCGAAGCAAGAGGCGCATGGCGGGAAGGAGAAGGGGAAGGGGAAGGG
GGGAAAGCAGTAGAGAGGAGACGACAAGGGAGGAAGGAGAGAAGGAGTAA
TGGAGGGAGGGAGGGAGGGATAAAGAGGGGAAAAGAAAAGTAAGAGACAA
AGTTGAGAGGGTTGGAGGCAGGGAGGCAGGGAGGGAGGGAAGGAGTGCAG
GGAAGATGGAGGGC
back to top

protein sequence of NO03G00430.1

>NO03G00430.1-protein ID=NO03G00430.1-protein|Name=NO03G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MAPMDVEKEKDKTKAGTDKGKKDGDKKKSEEETATSILTTGQLAADEIEV
IVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDVVNSFAVPFEE
DLKNPLIWYLDHNYLESMFHMSKKINAKERIVGFYSTGPKIKENDLQIDE
LFRRFCSSPVFVIIDVRPGVEGIPVMAYRTKEEVEGDGKEIQRTFEHIPS
SVGALEAEEVGVEHLLRDINDPSVSTLANQVKHKLVALSGLRERLEEMQT
YLQLVLAQKIPVNNQIIYNMQTIFNLLPNLNVGELVKGLMVKANDMHFII
YLSSLIRAIVALHGVVQNKIDFSEGEEGGKEGGKKKEKEGEKEGKEEEGK
EKGKEGGKEGGKGAKQEAHGGKEKGKGKGGKQ*
back to top

mRNA from alignment at chr3:136021..139118-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00430.1 ID=NO03G00430.1|Name=NO03G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=3098bp|location=Sequence derived from alignment at chr3:136021..139118- (Nannochloropsis oceanica)
GACTACCGACCGTCATCAGCGTCATCGCGAGCGCCACTGTCTCGCTCAAT TTCTCAAGACTTCGTTCCGCCCACACTCTTCCTCACACTTACAAGCCCAG CCCTCCCCTCTCCCGTGCGCTCGTACAATGCATAGGCGCGCCTCAATTTT GGCCCTGCGACCAGGTGCCGTGATGCCTGGTTCGCCCCTTGTGTGCTCTA CTTTGCCAGCTGCATCTCTTCCCCTGCCTACAGAAGCCCTAAGAAGGAGT CCTTCAGCGAGCAATTAAACCAACCCTCCACCTACCCCCAACACCCTGCA CAGAGCACAACGCCATGGCACCCATGGACGTGGAGAAGGAGAAGGACAAG ACAAAGGCCGGGACGGACAAGGGCAAGAAAGACGGGGACAAAAAGAAATC AGAGGAAGAGACTGCCACTTCCATTCTCACCACAGGGCAACTAGCAGCTG ATGAGGTAAAGTGATGTGTACGGCCGCAAAGATGGCAGATATGTTGGACA GAAGAAGGCTCAATGTCTTTGTGTATGCGTGCTTGCATATTTTGCCCTGT ATGTGGCGCCATTCATCCTGGCATTTCCATAATCTCATCCACTACCCCCC CTCCCCTCCCCTCCCTCACTCCCTCCCTTGCTCCCCTTCCTCCTCACAAG ATCGAAGTCATCGTGCACCCCCTTGTCCTCCTCTCCACCGTCGATCACTA CAACCGCGTGGCCAAGGACACCCGTAAACGTGTCGTGGGTGTCTTGCTGG GCACGACATGGCGGGGTCGGATCGATGTGGTTAACTCGTTCGCAGGTAGA GAGGGAGAGAGGGAGGGAGCGAGGGAGAGGTAGGGGAAGATAAAGAGGGA TAAGGGGAGGGAGGAAGGGGGAAGGGGAGGGAAGGTACCCATTATGCTCG AAGGAAGTGGAAAATCTGCCAGCTCATTTCTCCCCTCCCTCCGTCCCTCC CTTTCTCACTCCCGCCTTGGCAGTGCCGTTCGAGGAGGACCTGAAGAATC CGCTCATCTGGTACCTGGATCACAACTATCTAGAGAGCATGTTCCATATG TCCAAGAAGATAAACGGTGCGTCCCTCCCTCCCTCCCTCCCTCCCTCCCT CCCTCCCTCCCTCCTATCTGTTTCGATCCCATCCTCCCTTCGCATCGTTT CTTATGACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC TTCCTCTTTCCCTTCTTCCCCTTGTCTCCCCCTCCCTCTCATCATTCCTC CTCCCTCCCTCCCTCCCTCCCTCTCTCCCCCCCTTCAGCAAAGGAGCGCA TCGTGGGCTTCTACAGCACCGGGCCCAAGATCAAGGAGAACGACCTACAG GCAGGGAGGGAGGGAGGGAGGGAGGGGGGAAGGGAGGGAAGGGTGATGAG AAACGATGGGAAGAAGGGAAGGAGGGCAGGAGGGCAGGAGGGAGGGAGGG CGGGCAGGAAAAAAGTCATAACCCACCGGTAGGCTCACTTCCCACCTTCC CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCCTCCCTCCA GATCGACGAGCTCTTCCGACGGTTCTGCTCCTCGCCCGTCTTTGTCATCA TCGACGTCCGCCCGGGGGTGGAAGGGATTCCGGTCATGGCCTACAGAACC AAGGAGGAGGTGGAGGGGGTGAGGAGGGAGGGAGGGAGGGAGGGAGGGAG GGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGTGAAGTGACGAT GGGATGAAAGGAAACCCCCAGCGGGAGGAGGAGTAGGAGGGCGAGGACCA GGAACACGGGCACATACGGCAAACCATCCTCCTTAACCCCCCTCCCTCCC TCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCTTCCCCAGGACGGCAAGG AGATTCAACGCACGTTCGAGCATATCCCGTCCTCTGTGGGGGCGCTGGAG GCGGAGGAGGTCGGAGTGGAACACCTCCTCCGCGATATCAACGATCCCTC CGTCTCCACCCTCGCCAACCAAGTGCGCCTTCTGCCCCTCCCTCCCTCCC TCCCTCCCCCCCACCCTTCCTTTCTCGTCACGTGTATGTGGACACGCTAC CTACCTGAACCGTTCCTCCCTCCCTCCCTCCTTCTCTCAGGTGAAGCATA AGCTGGTTGCCCTCTCAGGCCTTCGGGAGCGCCTGGAGGAAATGCAGACG TACCTCCAACTTGTGCTCGCGCAAAAAATACCCGTCAACAACCAAATCAT TTACAACATGCAGGTGGGAAGGGAGAAAGAGAGGGAGGGAGGGAGGGAAT GAAGGCGGGCTGAAGGTCGACCGCTTTTGATTTAGTTTTTCCTTTATTTA TCCATCGTTTATTTATTGATTTATTCTACCCTCGTTTTCCTGACGAGCTC CTCTCTCTCCTCCCGTCCGCTTCCCCCCCGCCCTCTCCCCCTTCCTCGCA GACCATATTCAACCTCTTGCCGAACCTTAACGTGGGAGAGCTCGTCAAGG GCCTAATGGTGAAGGCCAACGACATGCATGTACGGCGGGCGGGAGGGAGG GCGGGAGGGAAGGAGGGTCGTGTATTTTCCCTCTTTTTCTTTTTCGTAGT TTGTCTCCTCATCGCTCTTCCTTCTCGTCTTCATGTCCATCCTCCCTCCC TCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTTCCCAGTTCATCATCTA CCTCTCCTCGCTCATTCGCGCCATTGTGGCTCTGCACGGTGTCGTCCAAA ACAAGATCGATTTCTCAGAAGGGGAGGAGGGCGGGAAGGAGGGAGGGAAG AAGAAGGAGAAAGAAGGGGAGAAAGAGGGGAAGGAGGAGGAGGGGAAAGA GAAGGGAAAGGAGGGAGGGAAGGAGGGAGGGAAGGGAGCGAAGCAAGAGG CGCATGGCGGGAAGGAGAAGGGGAAGGGGAAGGGGGGAAAGCAGTAGAGA GGAGACGACAAGGGAGGAAGGAGAGAAGGAGTAATGGAGGGAGGGAGGGA GGGATAAAGAGGGGAAAAGAAAAGTAAGAGACAAAGTTGAGAGGGTTGGA GGCAGGGAGGCAGGGAGGGAGGGAAGGAGTGCAGGGAAGATGGAGGGC
back to top

Coding sequence (CDS) from alignment at chr3:136021..139118-

>NO03G00430.1 ID=NO03G00430.1|Name=NO03G00430.1|organism=Nannochloropsis oceanica|type=CDS|length=1149bp|location=Sequence derived from alignment at chr3:136021..139118- (Nannochloropsis oceanica)
ATGGCACCCATGGACGTGGAGAAGGAGAAGGACAAGACAAAGGCCGGGAC
GGACAAGGGCAAGAAAGACGGGGACAAAAAGAAATCAGAGGAAGAGACTG
CCACTTCCATTCTCACCACAGGGCAACTAGCAGCTGATGAGATCGAAGTC
ATCGTGCACCCCCTTGTCCTCCTCTCCACCGTCGATCACTACAACCGCGT
GGCCAAGGACACCCGTAAACGTGTCGTGGGTGTCTTGCTGGGCACGACAT
GGCGGGGTCGGATCGATGTGGTTAACTCGTTCGCAGTGCCGTTCGAGGAG
GACCTGAAGAATCCGCTCATCTGGTACCTGGATCACAACTATCTAGAGAG
CATGTTCCATATGTCCAAGAAGATAAACGCAAAGGAGCGCATCGTGGGCT
TCTACAGCACCGGGCCCAAGATCAAGGAGAACGACCTACAGATCGACGAG
CTCTTCCGACGGTTCTGCTCCTCGCCCGTCTTTGTCATCATCGACGTCCG
CCCGGGGGTGGAAGGGATTCCGGTCATGGCCTACAGAACCAAGGAGGAGG
TGGAGGGGGACGGCAAGGAGATTCAACGCACGTTCGAGCATATCCCGTCC
TCTGTGGGGGCGCTGGAGGCGGAGGAGGTCGGAGTGGAACACCTCCTCCG
CGATATCAACGATCCCTCCGTCTCCACCCTCGCCAACCAAGTGAAGCATA
AGCTGGTTGCCCTCTCAGGCCTTCGGGAGCGCCTGGAGGAAATGCAGACG
TACCTCCAACTTGTGCTCGCGCAAAAAATACCCGTCAACAACCAAATCAT
TTACAACATGCAGACCATATTCAACCTCTTGCCGAACCTTAACGTGGGAG
AGCTCGTCAAGGGCCTAATGGTGAAGGCCAACGACATGCATTTCATCATC
TACCTCTCCTCGCTCATTCGCGCCATTGTGGCTCTGCACGGTGTCGTCCA
AAACAAGATCGATTTCTCAGAAGGGGAGGAGGGCGGGAAGGAGGGAGGGA
AGAAGAAGGAGAAAGAAGGGGAGAAAGAGGGGAAGGAGGAGGAGGGGAAA
GAGAAGGGAAAGGAGGGAGGGAAGGAGGGAGGGAAGGGAGCGAAGCAAGA
GGCGCATGGCGGGAAGGAGAAGGGGAAGGGGAAGGGGGGAAAGCAGTAG
back to top
Synonyms
Publications