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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:136021..139118 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G00430.1 vs.
Match: CBJ30666.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 415.6 bits (1067), Expect = 1.700e-112 Identity = 228/351 (64.96%), Postives = 274/351 (78.06%), Query Frame = 0
Query: 16 GTDKGKKDGDKKKSEEETATSILTTGQLAADEIEVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDVVNSFAVPFEEDLKNPLIWYLDHNYLESMFHMSKKINAKERIVGFYSTGPKIKENDLQIDELFRRFCSSPVFVIIDVRPGVEGIPVMAYRTKEEVEGDGKEIQRTFEHIPSSVGALEAEEVGVEHLLRDINDPSVSTLANQVKHKLVALSGLRERLEEMQTYLQLVLAQKIPVNNQIIYNMQTIFNLLPNLNVGELVKGLMVKANDMHFIIYLSSLIRAIVALHGVVQNKIDFS--EGEEGGKEGGKKKEKEGEKEGKEEEGKEKGKEGGKEGGKGA 365
G + G KD K + E A+ ++ G EV+VHPLVLLSTVDHYNRVA+D +KRVVGVLLG+ ++G +DV NSFAVPFEED++NP IWYLDHN+LE MF M KK+ AKERI GFYSTGPKI+ENDL I ELF+RFC +PV+VIIDVRP VEGIP AY T EEVE DGKEIQ+TF+H+ SSVGALEAEEVGVEHLLRDINDPSVS+LANQ+KHKL ALSGL+ +LEEMQTYL+ VL K+PVNNQI+YNMQ IFNLLPNLNV ELV+ ++VK NDMH +IY+S+LIR++VALH +V NKI + +G E GK+ K +EGE ++E KG+ KGA
Sbjct: 44 GKEGGGKDDKAKSGDAEVASVVVPKGIE-----EVVVHPLVLLSTVDHYNRVARDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDVRNPNIWYLDHNFLEGMFAMFKKVAAKERICGFYSTGPKIRENDLAIAELFKRFCPNPVYVIIDVRPDVEGIPTTAYVTAEEVEADGKEIQKTFKHVASSVGALEAEEVGVEHLLRDINDPSVSSLANQIKHKLSALSGLKSKLEEMQTYLKNVLDGKLPVNNQIVYNMQNIFNLLPNLNVDELVRSMLVKTNDMHLVIYVSALIRSVVALHDLVNNKIRYKDMDGLEAGKDETGTKPEEGEDAAAKKEA-TKGEPQKPGSNKGA 388
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G00430.1 ID=NO03G00430.1|Name=NO03G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1614bp GACTACCGACCGTCATCAGCGTCATCGCGAGCGCCACTGTCTCGCTCAAT TTCTCAAGACTTCGTTCCGCCCACACTCTTCCTCACACTTACAAGCCCAG CCCTCCCCTCTCCCGTGCGCTCGTACAATGCATAGGCGCGCCTCAATTTT GGCCCTGCGACCAGGTGCCGTGATGCCTGGTTCGCCCCTTGTGTGCTCTA CTTTGCCAGCTGCATCTCTTCCCCTGCCTACAGAAGCCCTAAGAAGGAGT CCTTCAGCGAGCAATTAAACCAACCCTCCACCTACCCCCAACACCCTGCA CAGAGCACAACGCCATGGCACCCATGGACGTGGAGAAGGAGAAGGACAAG ACAAAGGCCGGGACGGACAAGGGCAAGAAAGACGGGGACAAAAAGAAATC AGAGGAAGAGACTGCCACTTCCATTCTCACCACAGGGCAACTAGCAGCTG ATGAGATCGAAGTCATCGTGCACCCCCTTGTCCTCCTCTCCACCGTCGAT CACTACAACCGCGTGGCCAAGGACACCCGTAAACGTGTCGTGGGTGTCTT GCTGGGCACGACATGGCGGGGTCGGATCGATGTGGTTAACTCGTTCGCAG TGCCGTTCGAGGAGGACCTGAAGAATCCGCTCATCTGGTACCTGGATCAC AACTATCTAGAGAGCATGTTCCATATGTCCAAGAAGATAAACGCAAAGGA GCGCATCGTGGGCTTCTACAGCACCGGGCCCAAGATCAAGGAGAACGACC TACAGATCGACGAGCTCTTCCGACGGTTCTGCTCCTCGCCCGTCTTTGTC ATCATCGACGTCCGCCCGGGGGTGGAAGGGATTCCGGTCATGGCCTACAG AACCAAGGAGGAGGTGGAGGGGGACGGCAAGGAGATTCAACGCACGTTCG AGCATATCCCGTCCTCTGTGGGGGCGCTGGAGGCGGAGGAGGTCGGAGTG GAACACCTCCTCCGCGATATCAACGATCCCTCCGTCTCCACCCTCGCCAA CCAAGTGAAGCATAAGCTGGTTGCCCTCTCAGGCCTTCGGGAGCGCCTGG AGGAAATGCAGACGTACCTCCAACTTGTGCTCGCGCAAAAAATACCCGTC AACAACCAAATCATTTACAACATGCAGACCATATTCAACCTCTTGCCGAA CCTTAACGTGGGAGAGCTCGTCAAGGGCCTAATGGTGAAGGCCAACGACA TGCATTTCATCATCTACCTCTCCTCGCTCATTCGCGCCATTGTGGCTCTG CACGGTGTCGTCCAAAACAAGATCGATTTCTCAGAAGGGGAGGAGGGCGG GAAGGAGGGAGGGAAGAAGAAGGAGAAAGAAGGGGAGAAAGAGGGGAAGG AGGAGGAGGGGAAAGAGAAGGGAAAGGAGGGAGGGAAGGAGGGAGGGAAG GGAGCGAAGCAAGAGGCGCATGGCGGGAAGGAGAAGGGGAAGGGGAAGGG GGGAAAGCAGTAGAGAGGAGACGACAAGGGAGGAAGGAGAGAAGGAGTAA TGGAGGGAGGGAGGGAGGGATAAAGAGGGGAAAAGAAAAGTAAGAGACAA AGTTGAGAGGGTTGGAGGCAGGGAGGCAGGGAGGGAGGGAAGGAGTGCAG GGAAGATGGAGGGC back to topprotein sequence of NO03G00430.1 >NO03G00430.1-protein ID=NO03G00430.1-protein|Name=NO03G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp MAPMDVEKEKDKTKAGTDKGKKDGDKKKSEEETATSILTTGQLAADEIEV IVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDVVNSFAVPFEE DLKNPLIWYLDHNYLESMFHMSKKINAKERIVGFYSTGPKIKENDLQIDE LFRRFCSSPVFVIIDVRPGVEGIPVMAYRTKEEVEGDGKEIQRTFEHIPS SVGALEAEEVGVEHLLRDINDPSVSTLANQVKHKLVALSGLRERLEEMQT YLQLVLAQKIPVNNQIIYNMQTIFNLLPNLNVGELVKGLMVKANDMHFII YLSSLIRAIVALHGVVQNKIDFSEGEEGGKEGGKKKEKEGEKEGKEEEGK EKGKEGGKEGGKGAKQEAHGGKEKGKGKGGKQ* back to topmRNA from alignment at chr3:136021..139118- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G00430.1 ID=NO03G00430.1|Name=NO03G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=3098bp|location=Sequence derived from alignment at chr3:136021..139118- (Nannochloropsis oceanica) GACTACCGACCGTCATCAGCGTCATCGCGAGCGCCACTGTCTCGCTCAAT
TTCTCAAGACTTCGTTCCGCCCACACTCTTCCTCACACTTACAAGCCCAG
CCCTCCCCTCTCCCGTGCGCTCGTACAATGCATAGGCGCGCCTCAATTTT
GGCCCTGCGACCAGGTGCCGTGATGCCTGGTTCGCCCCTTGTGTGCTCTA
CTTTGCCAGCTGCATCTCTTCCCCTGCCTACAGAAGCCCTAAGAAGGAGT
CCTTCAGCGAGCAATTAAACCAACCCTCCACCTACCCCCAACACCCTGCA
CAGAGCACAACGCCATGGCACCCATGGACGTGGAGAAGGAGAAGGACAAG
ACAAAGGCCGGGACGGACAAGGGCAAGAAAGACGGGGACAAAAAGAAATC
AGAGGAAGAGACTGCCACTTCCATTCTCACCACAGGGCAACTAGCAGCTG
ATGAGGTAAAGTGATGTGTACGGCCGCAAAGATGGCAGATATGTTGGACA
GAAGAAGGCTCAATGTCTTTGTGTATGCGTGCTTGCATATTTTGCCCTGT
ATGTGGCGCCATTCATCCTGGCATTTCCATAATCTCATCCACTACCCCCC
CTCCCCTCCCCTCCCTCACTCCCTCCCTTGCTCCCCTTCCTCCTCACAAG
ATCGAAGTCATCGTGCACCCCCTTGTCCTCCTCTCCACCGTCGATCACTA
CAACCGCGTGGCCAAGGACACCCGTAAACGTGTCGTGGGTGTCTTGCTGG
GCACGACATGGCGGGGTCGGATCGATGTGGTTAACTCGTTCGCAGGTAGA
GAGGGAGAGAGGGAGGGAGCGAGGGAGAGGTAGGGGAAGATAAAGAGGGA
TAAGGGGAGGGAGGAAGGGGGAAGGGGAGGGAAGGTACCCATTATGCTCG
AAGGAAGTGGAAAATCTGCCAGCTCATTTCTCCCCTCCCTCCGTCCCTCC
CTTTCTCACTCCCGCCTTGGCAGTGCCGTTCGAGGAGGACCTGAAGAATC
CGCTCATCTGGTACCTGGATCACAACTATCTAGAGAGCATGTTCCATATG
TCCAAGAAGATAAACGGTGCGTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCTATCTGTTTCGATCCCATCCTCCCTTCGCATCGTTT
CTTATGACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TTCCTCTTTCCCTTCTTCCCCTTGTCTCCCCCTCCCTCTCATCATTCCTC
CTCCCTCCCTCCCTCCCTCCCTCTCTCCCCCCCTTCAGCAAAGGAGCGCA
TCGTGGGCTTCTACAGCACCGGGCCCAAGATCAAGGAGAACGACCTACAG
GCAGGGAGGGAGGGAGGGAGGGAGGGGGGAAGGGAGGGAAGGGTGATGAG
AAACGATGGGAAGAAGGGAAGGAGGGCAGGAGGGCAGGAGGGAGGGAGGG
CGGGCAGGAAAAAAGTCATAACCCACCGGTAGGCTCACTTCCCACCTTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCCTCCCTCCA
GATCGACGAGCTCTTCCGACGGTTCTGCTCCTCGCCCGTCTTTGTCATCA
TCGACGTCCGCCCGGGGGTGGAAGGGATTCCGGTCATGGCCTACAGAACC
AAGGAGGAGGTGGAGGGGGTGAGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGTGAAGTGACGAT
GGGATGAAAGGAAACCCCCAGCGGGAGGAGGAGTAGGAGGGCGAGGACCA
GGAACACGGGCACATACGGCAAACCATCCTCCTTAACCCCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCTTCCCCAGGACGGCAAGG
AGATTCAACGCACGTTCGAGCATATCCCGTCCTCTGTGGGGGCGCTGGAG
GCGGAGGAGGTCGGAGTGGAACACCTCCTCCGCGATATCAACGATCCCTC
CGTCTCCACCCTCGCCAACCAAGTGCGCCTTCTGCCCCTCCCTCCCTCCC
TCCCTCCCCCCCACCCTTCCTTTCTCGTCACGTGTATGTGGACACGCTAC
CTACCTGAACCGTTCCTCCCTCCCTCCCTCCTTCTCTCAGGTGAAGCATA
AGCTGGTTGCCCTCTCAGGCCTTCGGGAGCGCCTGGAGGAAATGCAGACG
TACCTCCAACTTGTGCTCGCGCAAAAAATACCCGTCAACAACCAAATCAT
TTACAACATGCAGGTGGGAAGGGAGAAAGAGAGGGAGGGAGGGAGGGAAT
GAAGGCGGGCTGAAGGTCGACCGCTTTTGATTTAGTTTTTCCTTTATTTA
TCCATCGTTTATTTATTGATTTATTCTACCCTCGTTTTCCTGACGAGCTC
CTCTCTCTCCTCCCGTCCGCTTCCCCCCCGCCCTCTCCCCCTTCCTCGCA
GACCATATTCAACCTCTTGCCGAACCTTAACGTGGGAGAGCTCGTCAAGG
GCCTAATGGTGAAGGCCAACGACATGCATGTACGGCGGGCGGGAGGGAGG
GCGGGAGGGAAGGAGGGTCGTGTATTTTCCCTCTTTTTCTTTTTCGTAGT
TTGTCTCCTCATCGCTCTTCCTTCTCGTCTTCATGTCCATCCTCCCTCCC
TCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTTCCCAGTTCATCATCTA
CCTCTCCTCGCTCATTCGCGCCATTGTGGCTCTGCACGGTGTCGTCCAAA
ACAAGATCGATTTCTCAGAAGGGGAGGAGGGCGGGAAGGAGGGAGGGAAG
AAGAAGGAGAAAGAAGGGGAGAAAGAGGGGAAGGAGGAGGAGGGGAAAGA
GAAGGGAAAGGAGGGAGGGAAGGAGGGAGGGAAGGGAGCGAAGCAAGAGG
CGCATGGCGGGAAGGAGAAGGGGAAGGGGAAGGGGGGAAAGCAGTAGAGA
GGAGACGACAAGGGAGGAAGGAGAGAAGGAGTAATGGAGGGAGGGAGGGA
GGGATAAAGAGGGGAAAAGAAAAGTAAGAGACAAAGTTGAGAGGGTTGGA
GGCAGGGAGGCAGGGAGGGAGGGAAGGAGTGCAGGGAAGATGGAGGGC back to topCoding sequence (CDS) from alignment at chr3:136021..139118- >NO03G00430.1 ID=NO03G00430.1|Name=NO03G00430.1|organism=Nannochloropsis oceanica|type=CDS|length=1149bp|location=Sequence derived from alignment at chr3:136021..139118- (Nannochloropsis oceanica) ATGGCACCCATGGACGTGGAGAAGGAGAAGGACAAGACAAAGGCCGGGAC GGACAAGGGCAAGAAAGACGGGGACAAAAAGAAATCAGAGGAAGAGACTG CCACTTCCATTCTCACCACAGGGCAACTAGCAGCTGATGAGATCGAAGTC ATCGTGCACCCCCTTGTCCTCCTCTCCACCGTCGATCACTACAACCGCGT GGCCAAGGACACCCGTAAACGTGTCGTGGGTGTCTTGCTGGGCACGACAT GGCGGGGTCGGATCGATGTGGTTAACTCGTTCGCAGTGCCGTTCGAGGAG GACCTGAAGAATCCGCTCATCTGGTACCTGGATCACAACTATCTAGAGAG CATGTTCCATATGTCCAAGAAGATAAACGCAAAGGAGCGCATCGTGGGCT TCTACAGCACCGGGCCCAAGATCAAGGAGAACGACCTACAGATCGACGAG CTCTTCCGACGGTTCTGCTCCTCGCCCGTCTTTGTCATCATCGACGTCCG CCCGGGGGTGGAAGGGATTCCGGTCATGGCCTACAGAACCAAGGAGGAGG TGGAGGGGGACGGCAAGGAGATTCAACGCACGTTCGAGCATATCCCGTCC TCTGTGGGGGCGCTGGAGGCGGAGGAGGTCGGAGTGGAACACCTCCTCCG CGATATCAACGATCCCTCCGTCTCCACCCTCGCCAACCAAGTGAAGCATA AGCTGGTTGCCCTCTCAGGCCTTCGGGAGCGCCTGGAGGAAATGCAGACG TACCTCCAACTTGTGCTCGCGCAAAAAATACCCGTCAACAACCAAATCAT TTACAACATGCAGACCATATTCAACCTCTTGCCGAACCTTAACGTGGGAG AGCTCGTCAAGGGCCTAATGGTGAAGGCCAACGACATGCATTTCATCATC TACCTCTCCTCGCTCATTCGCGCCATTGTGGCTCTGCACGGTGTCGTCCA AAACAAGATCGATTTCTCAGAAGGGGAGGAGGGCGGGAAGGAGGGAGGGA AGAAGAAGGAGAAAGAAGGGGAGAAAGAGGGGAAGGAGGAGGAGGGGAAA GAGAAGGGAAAGGAGGGAGGGAAGGAGGGAGGGAAGGGAGCGAAGCAAGA GGCGCATGGCGGGAAGGAGAAGGGGAAGGGGAAGGGGGGAAAGCAGTAG back to top
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