NO03G00420.1, NO03G00420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00420.1
Unique NameNO03G00420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length876
Alignment locationchr3:134163..135655 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:134163..135655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO03G00420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00420NO03G00420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00420.1NO03G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00420.1.cds1NO03G00420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00420.1.cds2NO03G00420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00420.1.cds3NO03G00420.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00420.1.cds4NO03G00420.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00420.1 ID=NO03G00420.1|Name=NO03G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=876bp
AACGATTCCCAAATGCTACCCAGCAGCTCTTCCGCACGCCCTTTTGCCAT
GCGAAACCCACGCGAGCAGGCCTTGACCGCTGCTACGTACAGTTACTTGT
GTAATATGCTTGAGTATACTGGTAAAAAGGACGCGGATGGGGCCTTGTTA
AATTCAACGAGGGCAGCAATGGCAGCAATAGCGTCATGACCAGATCGGCT
GATCGATCTCGTATCTAATCATATTTTGCACGTTCCAAGCATCTGCTCCG
CCTTAACTCTCGATATCTCTCTCTCTCATCCCGCCCTCAAGGGCAGTGAA
CCATGAGCTCCTCTAACGCCGATGGGCTGACGCAGCGCAAGGGGAAGAAG
GGTGGCAACAACAGCTCTGAAAAGGCCCCCTCGCTCGATAAGGAGGACAA
GCCCAAGCCTTTCAAGCAGTCCTCTTCCTACCTGAACCTGGACCCCGTGT
CGGAAAAGAACCTGGCTACCGTCATGCACTTTCTCCTCCCCTGTATGCTT
GCCGTGTACCTGGGCATTATCCTCCAAGGATACTCCGTCAAGGAGTTTAA
CGGCCTGATTACGAACCGATACTTTTTGCTCGGGTTTGCCAACGTGGAGG
TCCTCAAAAGGGCCTTGGTCGCCAATGTCCGTGATAGTGCCATCTGGGCC
ATTACATACCTCTATGTCCGACGGTTCTGCAACCCCGAATTCCGCCCTAA
AATGGCGTCTTTCGTCCAAGACGGATACTTCGGTGCCTTGGCGTCCTTCG
CCACGACACTGATCAAGCAGGTCATCAACAACTTCAACTAGATGAGGAGG
CGGGAAGGGAAGGGAGCAAGAGAGGGAGGGAGGATTATTTACAGTAGCGA
GGAGACAGAGCGGAGAGTTTGAGGGC
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protein sequence of NO03G00420.1

>NO03G00420.1-protein ID=NO03G00420.1-protein|Name=NO03G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MSSSNADGLTQRKGKKGGNNSSEKAPSLDKEDKPKPFKQSSSYLNLDPVS
EKNLATVMHFLLPCMLAVYLGIILQGYSVKEFNGLITNRYFLLGFANVEV
LKRALVANVRDSAIWAITYLYVRRFCNPEFRPKMASFVQDGYFGALASFA
TTLIKQVINNFN*
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mRNA from alignment at chr3:134163..135655+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00420.1 ID=NO03G00420.1|Name=NO03G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1493bp|location=Sequence derived from alignment at chr3:134163..135655+ (Nannochloropsis oceanica)
AACGATTCCCAAATGCTACCCAGCAGCTCTTCCGCACGCCCTTTTGCCAT
GCGAAACCCACGCGAGCAGGCCTTGACCGCTGCTACGTACAGTTACTTGT
GTAATATGCTTGAGTATACTGGTAAAAAGGACGCGGATGGGGCCTTGTTA
AATTCAACGAGGGCAGCAATGGCAGCAATAGCGTCATGACCAGATCGGCT
GATCGATCTCGTATCTAATCATATTTTGCACGTTCCAAGCATCTGCTCCG
CCTTAACTCTCGATATCTCTCTCTCTCATCCCGCCCTCAAGGGCAGTGAA
CCATGAGCTCCTCTAACGCCGATGGGCTGACGCAGCGCAAGGGGAAGAAG
GGTGGCAACAACAGCTCTGAAAAGGCCCCCTCGCTCGATAAGGAGGACAA
GCCCAAGCCTTTCAAGCAGTCCTCTTCCTACCTGAACCTGGACCCCGTGT
CGGAAAAGAACCTGGTAAGGAGATAATGATGTGTTGGGATGCGATGGGGA
GGAGGGATGGGAGAAAGGAGGTGGTAGGGTAGGTGGGTTACTAGATTTCC
GGGGAGTCAGGATGGAGGAGGTCAGATATGTGAATGTGGAGACGAATGGA
TGTACACGGCCTATGTACGAGGCACCAGCATGGACAATGTGGGTTATGCA
TGTCTTTGCCAGCATATTGTAAGGAGTACCTTTCACTGTCCACCTGCTCA
CCATTGTCTCCTCCCTTCCCTCCCCTCCCTCCCCTCCCTCCTCCTCTATC
CCAGGCTACCGTCATGCACTTTCTCCTCCCCTGTATGCTTGCCGTGTACC
TGGGCATTATCCTCCAAGGATACTCCGTCAAGGAGTTTAACGGCCTGATT
ACGAACCGATACTTTTTGCTCGGTAAGGATGCAGGGAAGAAGGGATGGGA
CGGCGGGAAGGGAGGGAAGGAGGGACGGGAGGGCGGCGGCGTCATGTGTC
TCCCTTCTACACGCTTACCTCAGCCATAGCCAAGAAACAATAGCCTCACT
ACGACCCCCCACAATCCTACCTCCCTCCCTCCCCCCCCAGGGTTTGCCAA
CGTGGAGGTCCTCAAAAGGGCCTTGGTCGCCAATGTCCGTGATAGTGCCA
TCTGGGCCATTACATACCTCTATGTCCGACGGTTCTGCAACCCCGAATTC
CGCCCTAAAATGGCGTCTTTCGTCCAAGACGGATACTTCGGTGCCTTGGC
GGTACGTCCTTCCTCTCTCCCATTTCCCTCCCTCCCTCCCCTTTTGGGGA
TTTTCCTTTCGTCCCTCCCTCTTATTGGTGGGGATCATGATCATATGCCG
GTGATTGAATCAACTCACCTTGTCTCCCTCCTTCCCTCCGTCCTTCTCTC
CCTCCTTCAGTCCTTCGCCACGACACTGATCAAGCAGGTCATCAACAACT
TCAACTAGATGAGGAGGCGGGAAGGGAAGGGAGCAAGAGAGGGAGGGAGG
ATTATTTACAGTAGCGAGGAGACAGAGCGGAGAGTTTGAGGGC
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Coding sequence (CDS) from alignment at chr3:134163..135655+

>NO03G00420.1 ID=NO03G00420.1|Name=NO03G00420.1|organism=Nannochloropsis oceanica|type=CDS|length=489bp|location=Sequence derived from alignment at chr3:134163..135655+ (Nannochloropsis oceanica)
ATGAGCTCCTCTAACGCCGATGGGCTGACGCAGCGCAAGGGGAAGAAGGG
TGGCAACAACAGCTCTGAAAAGGCCCCCTCGCTCGATAAGGAGGACAAGC
CCAAGCCTTTCAAGCAGTCCTCTTCCTACCTGAACCTGGACCCCGTGTCG
GAAAAGAACCTGGCTACCGTCATGCACTTTCTCCTCCCCTGTATGCTTGC
CGTGTACCTGGGCATTATCCTCCAAGGATACTCCGTCAAGGAGTTTAACG
GCCTGATTACGAACCGATACTTTTTGCTCGGGTTTGCCAACGTGGAGGTC
CTCAAAAGGGCCTTGGTCGCCAATGTCCGTGATAGTGCCATCTGGGCCAT
TACATACCTCTATGTCCGACGGTTCTGCAACCCCGAATTCCGCCCTAAAA
TGGCGTCTTTCGTCCAAGACGGATACTTCGGTGCCTTGGCGTCCTTCGCC
ACGACACTGATCAAGCAGGTCATCAACAACTTCAACTAG
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Synonyms
Publications