NO03G00400.4, NO03G00400.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00400.4
Unique NameNO03G00400.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3180
Alignment locationchr3:128162..131461 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:128162..131461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00400.4 vs.
Match: EWM29504.1 (hypothetical protein Naga_100601g2 [Nannochloropsis gaditana])

HSP 1 Score: 206.5 bits (524), Expect = 1.800e-49
Identity = 115/243 (47.33%), Postives = 150/243 (61.73%), Query Frame = 0 
Query:  178 EGGVPPLSPPRPQSDISHHRDTDAALIPINEKVPHRQEEAAGRPQEEKGEDEEEVLVEGKENKGERNEDGNEEQEAGAKTGEGM-GPVTQLRYVIEEKRNPAIPRVQPAGDKSVRIHFSSRSSSSSSSRPPLHRPASETHIQKILLTISSTDRGQRIADMWQGDKLDTILQTLGSAKGLCERGFDLTVWFIAAWEISLEKKRVDQALFCERVGKPVETRYWDHYPSNIGALLSSRHRLAMAEV 420
            E    P S P P+S      D + AL    EK+ H + E   +P+              +  + E N+  N  Q A +K    + GP         E  NPAIP +QPAG+K+ R           S RPPLHRPASETH+QKI+LTISS DRG+RI+D+W GDKL TIL+TL S + LCERGFDLTVWFIAAW+IS +++ +++ALFC+R  +PV+ RYWDH+P ++G  LSSRHRLAMA+V
Sbjct:  108 EKSTTPESRPSPESSFGSQEDLELALRITKEKILHEKVERQKQPK--------------RNEQNEENDPANSIQTANSKEKASLLGPFEA------EGGNPAIPLLQPAGEKATR--------PPISGRPPLHRPASETHVQKIILTISSIDRGERISDLWAGDKLLTILKTLVSVRELCERGFDLTVWFIAAWKISQQRELIEEALFCQRTQEPVQIRYWDHFPPDVGGFLSSRHRLAMAKV 322
The following BLAST results are available for this feature:
BLAST of NO03G00400.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29504.11.800e-4947.33hypothetical protein Naga_100601g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00400NO03G00400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00400.4NO03G00400.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00400.4.cds1NO03G00400.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00400.4 ID=NO03G00400.4|Name=NO03G00400.4|organism=Nannochloropsis oceanica|type=mRNA|length=3180bp
CGTCCATCTACGTGATCAAGGCACTCGTCCCTCGTAACTTTTTTTCCTTC
GAAAGGCTAATAACTAGGTCTCTACCAACCTGTTCACCTTTAAGCGCTAC
ACCCGACATGTATTTATTCCTGTGCGCCTGTGCATTTCATAACGCAATGG
CCCATACCTTTTCGTTGGCTAAGGCCAAAATATCGACAGACAGCCAAGCA
ATAACGCTCGTATTCAGTACTTATCTTTTCCTCCACTTACTGCACGACAA
AAGAGGAGGGAGGAACACACGCACTCCTATCCCCGAGGACCTGGCCTGCA
CCCGGCCTTCGCCCATCCCCTGTCATCCAGGCACGCAAGCATGCTGGGCA
AAGGCAGCATCGCCAAGCCCGTCCAGGGGAATGTGCCTAGCAAGCGTCAC
CTCGCCCTCGGGCAATACATGACAGATGCAACCGAAAGGGACAGCGACGG
CAGTAGAGTGTACACGCCAGCAGGCAGGGGCCCAAGCCAGCGACGCAAGC
GCCTGGGTTGGTTCGTTGTGGGGGCCCTGGTCTTGGTATCCATTACGCTT
AATGTCGTGGCCTTCCGCGGAGACGTGAGAGACAGGGACTTAGTCAATCA
GGAAAATAAGCCGATGGGAGAGGCAAAGCGGGCATCGTCGTGGTTGCTCT
GGCCGGAAGAGTTGACGTTGCGATATTACTTTCAGCGCTTGGGCAGCATT
GTGGGAGGAGGATATGCGATGGACGAGGAAAGGAAGAAGGGGCAGAAGGA
GAAAGAGGTGGTAGGCAAAAACATTGACGCGATAAGTGTAAGTGGCATGC
GGGAAGGGGAAGGTAAGGAAGGAGAAGGGAGAGCAGAGGGAGCAGCAGCT
GCAGCATCAGCGGCAGAGACAGAAGGAGGAGTCCCGCCTTTGTCGCCCCC
CCGACCACAGTCAGACATAAGCCATCACAGGGACACGGATGCAGCCCTAA
TACCCATAAATGAGAAAGTCCCGCACAGGCAAGAAGAGGCGGCGGGGCGA
CCTCAGGAGGAGAAGGGAGAGGACGAAGAGGAGGTGCTGGTAGAAGGGAA
GGAGAACAAGGGTGAAAGAAATGAGGACGGAAACGAAGAGCAAGAGGCAG
GCGCCAAGACAGGAGAAGGAATGGGCCCAGTAACACAATTAAGATATGTC
ATCGAGGAGAAGCGGAATCCGGCCATCCCCCGCGTTCAACCGGCGGGGGA
CAAATCCGTCCGCATCCACTTCAGCAGCAGAAGCAGCAGCAGCAGCAGCA
GTCGACCGCCCCTGCACCGGCCCGCCTCGGAGACCCACATCCAAAAAATA
TTGTTGACCATCTCAAGCACCGATAGAGGGCAACGGATAGCAGATATGTG
GCAGGGAGACAAGCTCGATACGATCCTTCAGACGCTGGGCAGCGCGAAGG
GGTTGTGTGAGCGGGGCTTTGATCTGACGGTCTGGTTTATTGCTGCCTGG
GAGATCTCGCTTGAGAAGAAGAGGGTTGACCAGGCCCTCTTCTGTGAGAG
AGTGGGGAAGCCGGTGGAGACCAGGTATTGGGATCACTACCCTAGTAATA
TTGGGGCCTTGCTGTCTTCGAGGCACAGGCTGGCCATGGCCGAGGTGTTT
GGTAGGGAGGAAGGGAAGGAGAGGAGGGAAGAGGAGGACAAAAGGGGAAA
GACGGGGTGGCAGGTTGATTCACTAAGAAACGTCCGGATGAGAAGTTTAA
ATAATTGCTGACCAAATTAACCCCCCTCTCCCTCCTTCACTCCTTTTCCC
CCTTCCTCCCTCCCTCGACCAGACGAGTACGATTTCTTCATCTCCATCGA
GGACGACATGTACGTCACGCCCTATCACTTCGACTCCTACCTCCACGCCA
GTAGTCAGCTCGCGCTCACCACCGACCCCTTCGCCCTCGAGCATTATCTT
GCGGGCTTCTCCCGTAAGGAACACGACAAGAATAACCAAGTCCATGAGGG
AGAGTGGGCGATATGGGAGACGGATGCCAAGGACTACACAGCCATTGAGC
TGAAGGGAGCAGGGTGGTGGGGAAAGGTCTCAGGAAATCCACATCAAGGC
ATGTGGATGGCCACGAGGGAGCAGGTGATGAATCTGGACATGAGGTGCAA
GGATGGATTTATTCACCTCCGAAACCCGGACAAGGCGGATTGGGTGGAGG
TGCGCCGAGGAGGGAGGGGAGGCGGAAGGGAGGGGATTGACGAGCTGGAC
GCACTGTGCCACACACCTGTACCCTTAACATCCTTTCCCCTATTCCCACA
ACACATGCCTTATTACTATCGCCCTTGTCCTTCCAGTTTTGGAGCGGCGC
CCTCCAGCTATACGACAGCCCTGCCTACTGCGAGGGCCTCCGTAAAGTCC
TACCTCTTGATGACGCCAATGGGGGTTTTGAATCCCTCACTGTGTGGCAT
ATGACCGACTCTAAATTGCACTCGAGAGGGAAAGGTGTCACACCAGTGCG
AGAAGTGATCGCGTACCTTGAGGACGACAAGGCGAGGAAGATTGCAGGGC
GGAAGGAAAGGGTTGATGGATAGTCGAATATCGGTTTTACTTTACATCGT
CCCTCATACGTCACTTTTTGAGCGATCGACTGAGCGGTCTGGCAAACAGT
GATCAGGCCGTGCAGGCCGGAGTTAAATGAGATGTAACTAAATAGAGACG
TGAGTGGTAGTTGATCAATACAGTGTCAGGCAGACAGGACAAATTTGGCT
GGATGCGCGATGCACACACGGCATTTAGGCAAGGGAGGGGAGACGAACGA
CAGGAGCGACTGAAAGATTGAGAAGTCTGCAGAACAAAGACGCTAGAGCT
TGCTGGGGGTCCGCGTAAGTCTATGCCAATATCCTGCCGAGCCAGAACAA
TGTAATATCAACCGAATAAGAAATCGAGCGGGTCTCTGACGTTTCCCGTG
TTATTCGTGTTGATTTTGATTTATTTGCGAGGTCGTATTGTGGTTTAGCA
GCCAAAACGCCACGGCGAAGCGATGCACGGCCTTTTCATTGTTTGCCAGA
CCGCTCGGTCGATCGCTCGAAAAGTGACATGTAAGGGACGATGTACGGTC
CTCATCGTATGGACGTGATCCTTGAAGCATCTTGAATATTTTTGCGAAAG
ATTTTAGCATAATAGAGGTGTGTACCGTGCATGATACGGGTCTAAAGAGG
AGAAATGTAGGATGAGGAACCATTGAGGGC
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protein sequence of NO03G00400.4

>NO03G00400.4-protein ID=NO03G00400.4-protein|Name=NO03G00400.4|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp
MLGKGSIAKPVQGNVPSKRHLALGQYMTDATERDSDGSRVYTPAGRGPSQ
RRKRLGWFVVGALVLVSITLNVVAFRGDVRDRDLVNQENKPMGEAKRASS
WLLWPEELTLRYYFQRLGSIVGGGYAMDEERKKGQKEKEVVGKNIDAISV
SGMREGEGKEGEGRAEGAAAAASAAETEGGVPPLSPPRPQSDISHHRDTD
AALIPINEKVPHRQEEAAGRPQEEKGEDEEEVLVEGKENKGERNEDGNEE
QEAGAKTGEGMGPVTQLRYVIEEKRNPAIPRVQPAGDKSVRIHFSSRSSS
SSSSRPPLHRPASETHIQKILLTISSTDRGQRIADMWQGDKLDTILQTLG
SAKGLCERGFDLTVWFIAAWEISLEKKRVDQALFCERVGKPVETRYWDHY
PSNIGALLSSRHRLAMAEVFGREEGKERREEEDKRGKTGWQVDSLRNVRM
RSLNNC*
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mRNA from alignment at chr3:128162..131461-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00400.4 ID=NO03G00400.4|Name=NO03G00400.4|organism=Nannochloropsis oceanica|type=mRNA|length=3300bp|location=Sequence derived from alignment at chr3:128162..131461- (Nannochloropsis oceanica)
CGTCCATCTACGTGATCAAGGCACTCGTCCCTCGTAACTTTTTTTCCTTC
GAAAGGCTAATAACTAGGTCTCTACCAACCTGTTCACCTTTAAGCGCTAC
ACCCGACATGTATTTATTCCTGTGCGCCTGTGCATTTCATAACGCAATGG
CCCATACCTTTTCGTTGGCTAAGGCCAAAATATCGACAGACAGCCAAGCA
ATAACGCTCGTATTCAGTACTTATCTTTTCCTCCACTTACTGCACGACAA
AAGAGGAGGGAGGAACACACGCACTCCTATCCCCGAGGACCTGGCCTGCA
CCCGGCCTTCGCCCATCCCCTGTCATCCAGGCACGCAAGCATGCTGGGCA
AAGGCAGCATCGCCAAGCCCGTCCAGGGGAATGTGCCTAGCAAGCGTCAC
CTCGCCCTCGGGCAATACATGACAGATGCAACCGAAAGGGACAGCGACGG
CAGTAGAGTGTACACGCCAGCAGGCAGGGGCCCAAGCCAGCGACGCAAGC
GCCTGGGTTGGTTCGTTGTGGGGGCCCTGGTCTTGGTATCCATTACGCTT
AATGTCGTGGCCTTCCGCGGAGACGTGAGAGACAGGGACTTAGTCAATCA
GGAAAATAAGCCGATGGGAGAGGCAAAGCGGGCATCGTCGTGGTTGCTCT
GGCCGGAAGAGTTGACGTTGCGATATTACTTTCAGCGCTTGGGCAGCATT
GTGGGAGGAGGATATGCGATGGACGAGGAAAGGAAGAAGGGGCAGAAGGA
GAAAGAGGTGGTAGGCAAAAACATTGACGCGATAAGTGTAAGTGGCATGC
GGGAAGGGGAAGGTAAGGAAGGAGAAGGGAGAGCAGAGGGAGCAGCAGCT
GCAGCATCAGCGGCAGAGACAGAAGGAGGAGTCCCGCCTTTGTCGCCCCC
CCGACCACAGTCAGACATAAGCCATCACAGGGACACGGATGCAGCCCTAA
TACCCATAAATGAGAAAGTCCCGCACAGGCAAGAAGAGGCGGCGGGGCGA
CCTCAGGAGGAGAAGGGAGAGGACGAAGAGGAGGTGCTGGTAGAAGGGAA
GGAGAACAAGGGTGAAAGAAATGAGGACGGAAACGAAGAGCAAGAGGCAG
GCGCCAAGACAGGAGAAGGAATGGGCCCAGTAACACAATTAAGATATGTC
ATCGAGGAGAAGCGGAATCCGGCCATCCCCCGCGTTCAACCGGCGGGGGA
CAAATCCGTCCGCATCCACTTCAGCAGCAGAAGCAGCAGCAGCAGCAGCA
GTCGACCGCCCCTGCACCGGCCCGCCTCGGAGACCCACATCCAAAAAATA
TTGTTGACCATCTCAAGCACCGATAGAGGGCAACGGATAGCAGATATGTG
GCAGGGAGACAAGCTCGATACGATCCTTCAGACGCTGGGCAGCGCGAAGG
GGTTGTGTGAGCGGGGCTTTGATCTGACGGTCTGGTTTATTGCTGCCTGG
GAGATCTCGCTTGAGAAGAAGAGGGTTGACCAGGCCCTCTTCTGTGAGAG
AGTGGGGAAGCCGGTGGAGACCAGGTATTGGGATCACTACCCTAGTAATA
TTGGGGCCTTGCTGTCTTCGAGGCACAGGCTGGCCATGGCCGAGGTGTTT
GGTAGGGAGGAAGGGAAGGAGAGGAGGGAAGAGGAGGACAAAAGGGGAAA
GACGGGGTGGCAGGTTGATTCACTAAGAAACGTCCGGATGAGAAGTTTAA
ATAATTGCTGACCAAATTAACCCCCCTCTCCCTCCTTCACTCCTTTTCCC
CCTTCCTCCCTCCCTCGACCAGACGAGTACGATTTCTTCATCTCCATCGA
GGACGACATGTACGTCACGCCCTATCACTTCGACTCCTACCTCCACGCCA
GTAGTCAGCTCGCGCTCACCACCGACCCCTTCGCCCTCGAGCATTATCTT
GCGGGCTTCTCCCGTAAGGAACACGACAAGAATAACCAAGTCCATGAGGG
AGAGTGGGCGATATGGGAGACGGATGCCAAGGACTACACAGCCATTGAGC
TGAAGGGAGCAGGGTGGTGGGGAAAGGTCTCAGGAAATCCACATCAAGGC
ATGTGGATGGCCACGAGGGAGCAGGTGATGAATCTGGACATGAGGTGCAA
GGATGGATTTATTCACCTCCGAAACCCGGACAAGGCGGATTGGGTGGAGG
TGCGCCGAGGAGGGAGGGGAGGCGGAAGGGAGGGGATTGACGAGCTGGAC
GCACTGTGCCACACACCTGTACCCTTAACATCCTTTCCCCTATTCCCACA
ACACATGCCTTATTACTATCGCCCTTGTCCTTCCAGTTTTGGAGCGGCGC
CCTCCAGGTAAGTACCAAGTTACCTCCGCACTTTTACTCATTTCCTTCCT
TCCTCATTTCCCCCTTTAGCCAGCAAGAGCACTCACTCGCCGTTCTCCCT
CCCTTATTTCTTGCGTTCTCTCTACAGCTATACGACAGCCCTGCCTACTG
CGAGGGCCTCCGTAAAGTCCTACCTCTTGATGACGCCAATGGGGGTTTTG
AATCCCTCACTGTGTGGCATATGACCGACTCTAAATTGCACTCGAGAGGG
AAAGGTGTCACACCAGTGCGAGAAGTGATCGCGTACCTTGAGGACGACAA
GGCGAGGAAGATTGCAGGGCGGAAGGAAAGGGTTGATGGATAGTCGAATA
TCGGTTTTACTTTACATCGTCCCTCATACGTCACTTTTTGAGCGATCGAC
TGAGCGGTCTGGCAAACAGTGATCAGGCCGTGCAGGCCGGAGTTAAATGA
GATGTAACTAAATAGAGACGTGAGTGGTAGTTGATCAATACAGTGTCAGG
CAGACAGGACAAATTTGGCTGGATGCGCGATGCACACACGGCATTTAGGC
AAGGGAGGGGAGACGAACGACAGGAGCGACTGAAAGATTGAGAAGTCTGC
AGAACAAAGACGCTAGAGCTTGCTGGGGGTCCGCGTAAGTCTATGCCAAT
ATCCTGCCGAGCCAGAACAATGTAATATCAACCGAATAAGAAATCGAGCG
GGTCTCTGACGTTTCCCGTGTTATTCGTGTTGATTTTGATTTATTTGCGA
GGTCGTATTGTGGTTTAGCAGCCAAAACGCCACGGCGAAGCGATGCACGG
CCTTTTCATTGTTTGCCAGACCGCTCGGTCGATCGCTCGAAAAGTGACAT
GTAAGGGACGATGTACGGTCCTCATCGTATGGACGTGATCCTTGAAGCAT
CTTGAATATTTTTGCGAAAGATTTTAGCATAATAGAGGTGTGTACCGTGC
ATGATACGGGTCTAAAGAGGAGAAATGTAGGATGAGGAACCATTGAGGGC
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Coding sequence (CDS) from alignment at chr3:128162..131461-

>NO03G00400.4 ID=NO03G00400.4|Name=NO03G00400.4|organism=Nannochloropsis oceanica|type=CDS|length=1371bp|location=Sequence derived from alignment at chr3:128162..131461- (Nannochloropsis oceanica)
ATGCTGGGCAAAGGCAGCATCGCCAAGCCCGTCCAGGGGAATGTGCCTAG
CAAGCGTCACCTCGCCCTCGGGCAATACATGACAGATGCAACCGAAAGGG
ACAGCGACGGCAGTAGAGTGTACACGCCAGCAGGCAGGGGCCCAAGCCAG
CGACGCAAGCGCCTGGGTTGGTTCGTTGTGGGGGCCCTGGTCTTGGTATC
CATTACGCTTAATGTCGTGGCCTTCCGCGGAGACGTGAGAGACAGGGACT
TAGTCAATCAGGAAAATAAGCCGATGGGAGAGGCAAAGCGGGCATCGTCG
TGGTTGCTCTGGCCGGAAGAGTTGACGTTGCGATATTACTTTCAGCGCTT
GGGCAGCATTGTGGGAGGAGGATATGCGATGGACGAGGAAAGGAAGAAGG
GGCAGAAGGAGAAAGAGGTGGTAGGCAAAAACATTGACGCGATAAGTGTA
AGTGGCATGCGGGAAGGGGAAGGTAAGGAAGGAGAAGGGAGAGCAGAGGG
AGCAGCAGCTGCAGCATCAGCGGCAGAGACAGAAGGAGGAGTCCCGCCTT
TGTCGCCCCCCCGACCACAGTCAGACATAAGCCATCACAGGGACACGGAT
GCAGCCCTAATACCCATAAATGAGAAAGTCCCGCACAGGCAAGAAGAGGC
GGCGGGGCGACCTCAGGAGGAGAAGGGAGAGGACGAAGAGGAGGTGCTGG
TAGAAGGGAAGGAGAACAAGGGTGAAAGAAATGAGGACGGAAACGAAGAG
CAAGAGGCAGGCGCCAAGACAGGAGAAGGAATGGGCCCAGTAACACAATT
AAGATATGTCATCGAGGAGAAGCGGAATCCGGCCATCCCCCGCGTTCAAC
CGGCGGGGGACAAATCCGTCCGCATCCACTTCAGCAGCAGAAGCAGCAGC
AGCAGCAGCAGTCGACCGCCCCTGCACCGGCCCGCCTCGGAGACCCACAT
CCAAAAAATATTGTTGACCATCTCAAGCACCGATAGAGGGCAACGGATAG
CAGATATGTGGCAGGGAGACAAGCTCGATACGATCCTTCAGACGCTGGGC
AGCGCGAAGGGGTTGTGTGAGCGGGGCTTTGATCTGACGGTCTGGTTTAT
TGCTGCCTGGGAGATCTCGCTTGAGAAGAAGAGGGTTGACCAGGCCCTCT
TCTGTGAGAGAGTGGGGAAGCCGGTGGAGACCAGGTATTGGGATCACTAC
CCTAGTAATATTGGGGCCTTGCTGTCTTCGAGGCACAGGCTGGCCATGGC
CGAGGTGTTTGGTAGGGAGGAAGGGAAGGAGAGGAGGGAAGAGGAGGACA
AAAGGGGAAAGACGGGGTGGCAGGTTGATTCACTAAGAAACGTCCGGATG
AGAAGTTTAAATAATTGCTGA
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Synonyms
Publications