NO03G00390.2, NO03G00390.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00390.2
Unique NameNO03G00390.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2772
Alignment locationchr3:124704..127712 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:124704..127712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G00390.2 vs.
Match: EWM29504.1 (hypothetical protein Naga_100601g2 [Nannochloropsis gaditana])

HSP 1 Score: 270.4 bits (690), Expect = 1.200e-68
Identity = 145/319 (45.45%), Postives = 199/319 (62.38%), Query Frame = 0 
Query:  232 DPIQLKPQPKPVEHPNENDEIKRDRMRRQFAEEKARALAWPTPEDLLLTPSIDTESGVVVPF--PPSKGVIRKPIVAQPPLHRPRDEVEVEKILVFLSSSDRGQRVRHLWGHGDKMETIEVTLASLASWCERGFDVTLWFLAAWKVSEEDERIKKALQCERIGTSLEVRYWDDYPLNVDGYLSSKHRLALAEAKDDFDFFISIEDDMHLRPVMLDAFLQDSGRLAKAEKPYL-NRFFPGFVRIEHDPL-ADQQWAIWETDAADYEGIFLGGNAGWWGLVGGNRHQGMWMATREQVYHLEERCNSRFFGIRE-KTADWVE 546
            + ++ + QPK  E   END    + ++   ++EKA           LL P         +P   P  +   R PI  +PPLHRP  E  V+KI++ +SS DRG+R+  LW  GDK+ TI  TL S+   CERGFD+T+WF+AAWK+S++ E I++AL C+R    +++RYWD +P +V G+LSS+HRLA+A+  D++DFFISIEDD++L P M+DA++  SGRLA     Y       GF R EHD L  D+ WA+WET A DY  + L G AGWW  V GN HQ MWMATREQ+Y+ E RC S F  ++  + A+WVE
Sbjct:  143 EKVERQKQPKRNEQNEENDPA--NSIQTANSKEKAS----------LLGPFEAEGGNPAIPLLQPAGEKATRPPISGRPPLHRPASETHVQKIILTISSIDRGERISDLWA-GDKLLTILKTLVSVRELCERGFDLTVWFIAAWKISQQRELIEEALFCQRTQEPVQIRYWDHFPPDVGGFLSSRHRLAMAKVMDEYDFFISIEDDIYLTPSMVDAYVHASGRLALTTDAYAREHHMVGFSRKEHDLLREDRAWALWETLAVDYHVLQLPG-AGWWAQVTGNPHQAMWMATREQIYNFESRCESGFLKLKHPREAEWVE 447
The following BLAST results are available for this feature:
BLAST of NO03G00390.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29504.11.200e-6845.45hypothetical protein Naga_100601g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00390NO03G00390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00390.2NO03G00390.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00390.2.cds1NO03G00390.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00390.2.cds2NO03G00390.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00390.2 ID=NO03G00390.2|Name=NO03G00390.2|organism=Nannochloropsis oceanica|type=mRNA|length=2772bp
AACAAAAATTCAGTGCCCTTATGGAACCGCTGAATTCACCTCACGACCCC
GTGTGCGGCAACGTCGGGGGCGGTCGACGAAGGCTACCCGAAGGCAGACA
GTATGTTACAGCCCAATACATCCCTAAGATTCATGGGAGAGAGAGACGGC
GGGGGGTCATACTGCAGCATGCGGCAAAGCTGGCGTTTGGCATCGTCATC
AGTATAGCCTTGGCTAACTTCGCCTTGCGTCACTACTCAGCGCATGGGCC
GATGGATTGGGGCATGGAACTGTCGGCGGTGGGGCCTTCTGTCGAGACGA
TAGAGAAGATAAAAGCATTCTCTTTGACCAGCTTTCTGAAAGCGGGAAAA
AGTGATCAAAATAGCGGCGACAATGCAGGGAACAAAATTGACGTTGAAAA
TGAGATAGATACGGGGGGACAGAAAGTGGAAGAAGAGAAGAAAACCATGG
AGAAAACGAAGAAGATAGCTATGGCAGCTTCCACTGAAATGCAAGACGCT
CCTGGTGTAGACACACCTGACCCAGTGATTGGAAAGGCTGAAGAGGAAAA
GTCCAGTACACTGGACGAGCATGTGAAAGAAAGAGAAAAGAAGGAAAATG
AGGATGAAGAGAAGAAGAGGAGGGAGGACGAAGAGGAGGAGAAGTGGGAC
GAAGAGAAGAAGGAAGAAGAGAAGAAGGAAGAAGAGGATGGTAATGATAT
TGATGGTGATGGTGATCCGATTCAATTAAAGCCGCAGCCCAAGCCGGTCG
AACACCCGAACGAGAACGATGAGATCAAGAGAGACCGCATGCGGCGACAG
TTTGCCGAAGAGAAAGCTCGGGCTCTTGCCTGGCCTACCCCCGAGGACCT
CCTCTTGACGCCAAGCATCGATACGGAGTCAGGCGTAGTGGTGCCTTTCC
CGCCTTCAAAAGGTGTGATTCGCAAGCCCATCGTCGCTCAGCCACCCTTG
CACCGGCCTCGGGATGAGGTGGAGGTGGAGAAGATCTTAGTCTTCCTCTC
CTCCTCGGATCGGGGGCAACGAGTAAGACACCTGTGGGGCCACGGGGACA
AGATGGAAACTATTGAAGTGACGTTGGCCTCCCTAGCATCATGGTGCGAG
AGGGGTTTTGACGTCACCCTCTGGTTTCTGGCCGCGTGGAAGGTTTCCGA
GGAGGACGAGCGGATCAAGAAGGCGCTCCAGTGTGAGCGAATCGGAACGT
CCCTGGAGGTGAGGTATTGGGACGATTACCCCCTTAATGTAGACGGATAC
CTCTCGAGCAAGCACCGCCTGGCCCTGGCGGAGGCCAAAGACGACTTCGA
CTTCTTCATATCCATCGAGGACGATATGCACTTGCGTCCCGTCATGCTGG
ATGCGTTCTTGCAGGATTCAGGGAGGCTGGCAAAGGCGGAAAAGCCGTAC
CTCAACAGATTTTTCCCTGGGTTTGTGAGGATTGAGCATGACCCGTTGGC
GGACCAGCAGTGGGCGATATGGGAGACGGACGCAGCTGATTACGAAGGGA
TTTTTCTGGGTGGGAATGCGGGCTGGTGGGGGCTGGTGGGGGGAAACAGG
CATCAGGGCATGTGGATGGCGACGAGGGAGCAGGTCTACCACCTGGAAGA
GCGGTGTAATTCAAGATTTTTCGGAATCCGTGAAAAGACAGCCGATTGGG
TGGAGGTAAGTCTTAAGCGACGGAGGGAGGGAGGGTAGGGATGGTGGAAA
AGGCCATCGTAAACGGATGGGATTAATATGAGTGATGGTGTTTCTCACGC
CATTCTATGCGACACACGTACCTGCACACACCTTGTGTATTGCTGCAACG
ACACCATTACCAGTTCTGGAGCGGTGGACTGCAGCTTTGGATTGACTGCC
GCGGCATCGAGAAGGTCTTGTCAATCAGCACCCTCGTCGAGGGCTCTTCA
GTGTGGCACATGACTGACATCAAGCTGCATGATCGTGGGAAGGGCGTCAC
GCCTCTGGAAGAGGTTGTAGGGAAGCTGGAGGGACAGAGGGAGGAGGGGG
GGAGACGACACCGGTACGAGGAGAAAAGGGCGAGTTTGGTGATGGAGTAA
TAGGGTAGGGATGATGGAGGGATGGTGAAGGGAATGGCGAGGCGAAGGGA
GGCATGAAAGGAGGGTGGGCCATGCTTGTGCGACCTTACGAGGGAGGGAA
GGAGGGAAGGAGGAAGGGAGGAAAGGGAGGAAGGAGGGGATGGGGGGATG
TAGGTTAGATGATGAGTAATTTATAAATCTCTGGGGAGAAGGCCACGGCG
GGAGCAGTGGATTAATGCATGAATGATATGAGGCGGACGTAAATAAAGGA
TAAGGTGAATGTACATGGCATTCGGTTAGACACACACAACGCACACCGAT
AATAAGGCTGCTGTAATATGTTGCGGTTAAGTTCAGAAAGAGGAACAATA
CGAGCACCACGACCACTGCGAGAATCACCCTCTGCAGGCGACGAAGGACC
TGCCAAAAGGAGCCTCTTTTTGCTTCTCTTGTCCCTGCTTTCTCTTCGCT
GTCTTTCCAGCCGTCAGCCCCGTGTTTGATTCTTTGGTCATTTTTGTATT
GTACTGGCATTCCATTGCTGCCGCCGCCGCCGCTGCTACTGCTGCTGCTG
CAGCTGTTGTTTCCTCTATAGCACACAGATAGTTCATTTTTATTTACATT
CCCAGTGCATCCGACTTCTCTGAACACTCCTCCTCCTCCTCCCCTTCCTT
TCGATCGATTGACCTCTCAAAACCACATAAAACCAATACGTCCATTACCC
CCCCCCTCTGTCTCCCTCCCCC
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protein sequence of NO03G00390.2

>NO03G00390.2-protein ID=NO03G00390.2-protein|Name=NO03G00390.2|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp
MEPLNSPHDPVCGNVGGGRRRLPEGRQYVTAQYIPKIHGRERRRGVILQH
AAKLAFGIVISIALANFALRHYSAHGPMDWGMELSAVGPSVETIEKIKAF
SLTSFLKAGKSDQNSGDNAGNKIDVENEIDTGGQKVEEEKKTMEKTKKIA
MAASTEMQDAPGVDTPDPVIGKAEEEKSSTLDEHVKEREKKENEDEEKKR
REDEEEEKWDEEKKEEEKKEEEDGNDIDGDGDPIQLKPQPKPVEHPNEND
EIKRDRMRRQFAEEKARALAWPTPEDLLLTPSIDTESGVVVPFPPSKGVI
RKPIVAQPPLHRPRDEVEVEKILVFLSSSDRGQRVRHLWGHGDKMETIEV
TLASLASWCERGFDVTLWFLAAWKVSEEDERIKKALQCERIGTSLEVRYW
DDYPLNVDGYLSSKHRLALAEAKDDFDFFISIEDDMHLRPVMLDAFLQDS
GRLAKAEKPYLNRFFPGFVRIEHDPLADQQWAIWETDAADYEGIFLGGNA
GWWGLVGGNRHQGMWMATREQVYHLEERCNSRFFGIREKTADWVEVSLKR
RREGG*
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mRNA from alignment at chr3:124704..127712-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00390.2 ID=NO03G00390.2|Name=NO03G00390.2|organism=Nannochloropsis oceanica|type=mRNA|length=3009bp|location=Sequence derived from alignment at chr3:124704..127712- (Nannochloropsis oceanica)
AACAAAAATTCAGTGCCCTTATGGAACCGCTGAATTCACCTCACGACCCC
GTGTGCGGCAACGTCGGGGGCGGTCGACGAAGGCTACCCGAAGGCAGACA
GTATGTTACAGCCCAATACATCCCTAAGATTCATGGGAGAGAGAGACGGC
GGGGGGTCATACTGCAGCATGCGGCAAAGCTGGCGTTTGGCATCGTCATC
AGTATAGCCTTGGCTAACTTCGCCTTGCGTCACTACTCAGCGCATGGGCC
GATGGATTGGGGCATGGAACTGTCGGCGGTGGGGCCTTCTGTCGAGACGA
TAGAGAAGATAAAAGCATTCTCTTTGACCAGCTTTCTGAAAGCGGGAAAA
AGTGATCAAAATAGCGGCGACAATGCAGGGAACAAAATTGACGTTGAAAA
TGAGATAGATACGGGGGGACAGAAAGTGGAAGAAGAGAAGAAAACCATGG
AGAAAACGAAGAAGATAGCTATGGCAGCTTCCACTGAAATGCAAGACGCT
CCTGGTGTAGACACACCTGACCCAGTGATTGGAAAGGCTGAAGAGGAAAA
GTCCAGTACACTGGACGAGCATGTGAAAGAAAGAGAAAAGAAGGAAAATG
AGGATGAAGAGAAGAAGAGGAGGGAGGACGAAGAGGAGGAGAAGTGGGAC
GAAGAGAAGAAGGAAGAAGAGAAGAAGGAAGAAGAGGATGGTAATGATAT
TGATGGTGATGGTGATCCGATTCAATTAAAGCCGCAGCCCAAGCCGGTCG
AACACCCGAACGAGAACGATGAGATCAAGAGAGACCGCATGCGGCGACAG
TTTGCCGAAGAGAAAGCTCGGGCTCTTGCCTGGCCTACCCCCGAGGACCT
CCTCTTGACGCCAAGCATCGATACGGAGTCAGGCGTAGTGGTGCCTTTCC
CGCCTTCAAAAGGTGTGATTCGCAAGCCCATCGTCGCTCAGCCACCCTTG
CACCGGCCTCGGGATGAGGTGGAGGTGGAGAAGATCTTAGTCTTCCTCTC
CTCCTCGGATCGGGGGCAACGAGTAAGACACCTGTGGGGCCACGGGGACA
AGATGGAAACTATTGAAGTGACGTTGGCCTCCCTAGCATCATGGTGCGAG
AGGGGTTTTGACGTCACCCTCTGGTTTCTGGCCGCGTGGAAGGTTTCCGA
GGAGGACGAGCGGATCAAGAAGGCGCTCCAGTGTGAGCGAATCGGAACGT
CCCTGGAGGTGAGGTATTGGGACGATTACCCCCTTAATGTAGACGGATAC
CTCTCGAGCAAGCACCGCCTGGCCCTGGCGGAGGCCAAAGACGACTTCGA
CTTCTTCATATCCATCGAGGACGATATGCACTTGCGTCCCGTCATGCTGG
ATGCGTTCTTGCAGGATTCAGGGAGGCTGGCAAAGGCGGAAAAGCCGTAC
CTCAACAGATTTTTCCCTGGGTTTGTGAGGATTGAGCATGACCCGTTGGC
GGACCAGCAGTGGGCGATATGGGAGACGGACGCAGCTGATTACGAAGGGA
TTTTTCTGGGTGGGAATGCGGGCTGGTGGGGGCTGGTGGGGGGAAACAGG
TGAGGATCGATGGGAGGGTGGATATGTGTGTGGGGGGGGGGGCGTTGGGT
ACTTTTCAGTTCATTTGTAGAGGGTCATGATTTTTATATCTACCTAACAG
GCATCAGGGCATGTGGATGGCGACGAGGGAGCAGGTCTACCACCTGGAAG
AGCGGTGTAATTCAAGATTTTTCGGAATCCGTGAAAAGACAGCCGATTGG
GTGGAGGTAAGTCTTAAGCGACGGAGGGAGGGAGGGTAGGGATGGTGGAA
AAGGCCATCGTAAACGGATGGGATTAATATGAGTGATGGTGTTTCTCACG
CCATTCTATGCGACACACGTACCTGCACACACCTTGTGTATTGCTGCAAC
GACACCATTACCAGTTCTGGAGCGGTGGACTGCAGGTAAGCTGAGGGAAG
CAAAGGAGGGAGGGAGGGCGGGCGGGCGGGCGGGCGGGAGGAAGTCACAA
GAGTCACTCACATCGTCTGTCTCCTATCCTATTTTCTCTCCCCCCGGGGG
ATATCCCTCCACAACAAATAGCTTTGGATTGACTGCCGCGGCATCGAGAA
GGTCTTGTCAATCAGCACCCTCGTCGAGGGCTCTTCAGTGTGGCACATGA
CTGACATCAAGCTGCATGATCGTGGGAAGGGCGTCACGCCTCTGGAAGAG
GTTGTAGGGAAGCTGGAGGGACAGAGGGAGGAGGGGGGGAGACGACACCG
GTACGAGGAGAAAAGGGCGAGTTTGGTGATGGAGTAATAGGGTAGGGATG
ATGGAGGGATGGTGAAGGGAATGGCGAGGCGAAGGGAGGCATGAAAGGAG
GGTGGGCCATGCTTGTGCGACCTTACGAGGGAGGGAAGGAGGGAAGGAGG
AAGGGAGGAAAGGGAGGAAGGAGGGGATGGGGGGATGTAGGTTAGATGAT
GAGTAATTTATAAATCTCTGGGGAGAAGGCCACGGCGGGAGCAGTGGATT
AATGCATGAATGATATGAGGCGGACGTAAATAAAGGATAAGGTGAATGTA
CATGGCATTCGGTTAGACACACACAACGCACACCGATAATAAGGCTGCTG
TAATATGTTGCGGTTAAGTTCAGAAAGAGGAACAATACGAGCACCACGAC
CACTGCGAGAATCACCCTCTGCAGGCGACGAAGGACCTGCCAAAAGGAGC
CTCTTTTTGCTTCTCTTGTCCCTGCTTTCTCTTCGCTGTCTTTCCAGCCG
TCAGCCCCGTGTTTGATTCTTTGGTCATTTTTGTATTGTACTGGCATTCC
ATTGCTGCCGCCGCCGCCGCTGCTACTGCTGCTGCTGCAGCTGTTGTTTC
CTCTATAGCACACAGATAGTTCATTTTTATTTACATTCCCAGTGCATCCG
ACTTCTCTGAACACTCCTCCTCCTCCTCCCCTTCCTTTCGATCGATTGAC
CTCTCAAAACCACATAAAACCAATACGTCCATTACCCCCCCCCTCTGTCT
CCCTCCCCC
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Coding sequence (CDS) from alignment at chr3:124704..127712-

>NO03G00390.2 ID=NO03G00390.2|Name=NO03G00390.2|organism=Nannochloropsis oceanica|type=CDS|length=1668bp|location=Sequence derived from alignment at chr3:124704..127712- (Nannochloropsis oceanica)
ATGGAACCGCTGAATTCACCTCACGACCCCGTGTGCGGCAACGTCGGGGG
CGGTCGACGAAGGCTACCCGAAGGCAGACAGTATGTTACAGCCCAATACA
TCCCTAAGATTCATGGGAGAGAGAGACGGCGGGGGGTCATACTGCAGCAT
GCGGCAAAGCTGGCGTTTGGCATCGTCATCAGTATAGCCTTGGCTAACTT
CGCCTTGCGTCACTACTCAGCGCATGGGCCGATGGATTGGGGCATGGAAC
TGTCGGCGGTGGGGCCTTCTGTCGAGACGATAGAGAAGATAAAAGCATTC
TCTTTGACCAGCTTTCTGAAAGCGGGAAAAAGTGATCAAAATAGCGGCGA
CAATGCAGGGAACAAAATTGACGTTGAAAATGAGATAGATACGGGGGGAC
AGAAAGTGGAAGAAGAGAAGAAAACCATGGAGAAAACGAAGAAGATAGCT
ATGGCAGCTTCCACTGAAATGCAAGACGCTCCTGGTGTAGACACACCTGA
CCCAGTGATTGGAAAGGCTGAAGAGGAAAAGTCCAGTACACTGGACGAGC
ATGTGAAAGAAAGAGAAAAGAAGGAAAATGAGGATGAAGAGAAGAAGAGG
AGGGAGGACGAAGAGGAGGAGAAGTGGGACGAAGAGAAGAAGGAAGAAGA
GAAGAAGGAAGAAGAGGATGGTAATGATATTGATGGTGATGGTGATCCGA
TTCAATTAAAGCCGCAGCCCAAGCCGGTCGAACACCCGAACGAGAACGAT
GAGATCAAGAGAGACCGCATGCGGCGACAGTTTGCCGAAGAGAAAGCTCG
GGCTCTTGCCTGGCCTACCCCCGAGGACCTCCTCTTGACGCCAAGCATCG
ATACGGAGTCAGGCGTAGTGGTGCCTTTCCCGCCTTCAAAAGGTGTGATT
CGCAAGCCCATCGTCGCTCAGCCACCCTTGCACCGGCCTCGGGATGAGGT
GGAGGTGGAGAAGATCTTAGTCTTCCTCTCCTCCTCGGATCGGGGGCAAC
GAGTAAGACACCTGTGGGGCCACGGGGACAAGATGGAAACTATTGAAGTG
ACGTTGGCCTCCCTAGCATCATGGTGCGAGAGGGGTTTTGACGTCACCCT
CTGGTTTCTGGCCGCGTGGAAGGTTTCCGAGGAGGACGAGCGGATCAAGA
AGGCGCTCCAGTGTGAGCGAATCGGAACGTCCCTGGAGGTGAGGTATTGG
GACGATTACCCCCTTAATGTAGACGGATACCTCTCGAGCAAGCACCGCCT
GGCCCTGGCGGAGGCCAAAGACGACTTCGACTTCTTCATATCCATCGAGG
ACGATATGCACTTGCGTCCCGTCATGCTGGATGCGTTCTTGCAGGATTCA
GGGAGGCTGGCAAAGGCGGAAAAGCCGTACCTCAACAGATTTTTCCCTGG
GTTTGTGAGGATTGAGCATGACCCGTTGGCGGACCAGCAGTGGGCGATAT
GGGAGACGGACGCAGCTGATTACGAAGGGATTTTTCTGGGTGGGAATGCG
GGCTGGTGGGGGCTGGTGGGGGGAAACAGGCATCAGGGCATGTGGATGGC
GACGAGGGAGCAGGTCTACCACCTGGAAGAGCGGTGTAATTCAAGATTTT
TCGGAATCCGTGAAAAGACAGCCGATTGGGTGGAGGTAAGTCTTAAGCGA
CGGAGGGAGGGAGGGTAG
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Synonyms
Publications