NO03G00350.1, NO03G00350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00350.1
Unique NameNO03G00350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1282
Alignment locationchr3:112122..113996 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:112122..113996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00350.1 vs.
Match: POM76672.1 (DNA-directed RNA polymerase II [Phytophthora palmivora var. palmivora])

HSP 1 Score: 273.1 bits (697), Expect = 1.200e-69
Identity = 153/340 (45.00%), Postives = 216/340 (63.53%), Query Frame = 0 
Query:    1 MPNVRAPKLEILELKDDFIKFILSDTDASVANALRRVMIAEVPTLAIDLVSFEVNSSVLNDEYLAHRLGLIPL----RSTNPRYKKVADLKDFRDCDCDLHCPRCSVELTLDVNYHTKKQQLARMEGFGEGGMEGEASGLPVNVTSADLTVTEDEEQQVWVEPAHFTSDAEKDRLGDPAQGGISIVQLGPGQAVRLTAIAKKGIGKEHAKWSPCAVATYTNEPILSINKEEHDKLSLEKKKQLVDCCPTKVFKLDER-ENVVVARPRKCIFCNECQTVSKALKAHQDDDFVVHLAANEEKFVFAVETTGALTAGEVVESALEIVLGKITEVQTQLVHIAR 336
            MP+ R PK+EI EL+DDFI+F LS+TDASVANA+RRVMI+EVPTLAIDLVS E+N+SV+ DE+LAHRLG+IPL    R  N R + V      +DCDCD +CP CSVE +LDV                       A    ++VTS  L     +    ++ P +F+S+ E   L +    G+ I +LGPGQ +RL+AIAK GIGKEHAKWSP AVAT+  +PI+++N+      S E+K +L  CCPT+VF+ DE  E   V    +C++C+EC  ++ + K + +DD  V +   E+KF+F+VETTG L   EVV  AL+++  K++ ++ Q + +++
Sbjct:  835 MPHPRFPKIEIQELRDDFIRFELSETDASVANAIRRVMISEVPTLAIDLVSIEINTSVMTDEFLAHRLGMIPLNFDGRLENFRQRFVYS----QDCDCDENCPNCSVEFSLDVT----------------------ADNGVLSVTSEAL-----KSSDPYIRPVNFSSEEE---LNNTQDSGVIIAKLGPGQRLRLSAIAKLGIGKEHAKWSPVAVATFMYDPIITLNQAVLSTYSPEQKAELYKCCPTEVFETDENYEQFTVGDAMRCMYCDECVKLADSFKDNPEDDSAVSIRMREDKFIFSVETTGQLKPEEVVICALDLIREKLSSLKHQCLELSQ 1140
The following BLAST results are available for this feature:
BLAST of NO03G00350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
POM76672.11.200e-6945.00DNA-directed RNA polymerase II [Phytophthora palmi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00350NO03G00350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00350.1NO03G00350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00350.1.cds1NO03G00350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00350.1.cds2NO03G00350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00350.1.cds3NO03G00350.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00350.1.cds4NO03G00350.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00350.1.cds5NO03G00350.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00350.1 ID=NO03G00350.1|Name=NO03G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1282bp
CAGGCTACTACTTGTGCAGCAACCACTGATTTTAGCGCGGGCGGGACTGT
GTGTGGAAAGCTAGGGAGGGACAAGAGTATCTCTCCGCCTTGGTGCCTGC
CTCAGCCCCTGCTCTGTCAACCAGCGGCACCTACACGTAAAGCCACCCTC
TCGACAACGCTTCGACAACCCTAAAGATGCCGAACGTCCGCGCCCCTAAG
CTGGAAATCCTAGAGCTAAAGGACGACTTTATCAAATTCATTCTCTCCGA
CACGGATGCCTCTGTTGCCAATGCCTTGCGGCGGGTGATGATTGCCGAAG
TCCCTACCTTGGCCATCGATCTTGTGTCGTTCGAAGTGAACTCCTCCGTG
CTGAATGACGAGTACCTCGCCCATCGCTTGGGCCTCATTCCCCTCCGCTC
TACGAATCCGCGCTACAAGAAGGTGGCTGACCTCAAGGACTTTCGAGACT
GCGATTGTGACTTGCATTGCCCCCGCTGCTCGGTCGAGCTGACGTTAGAT
GTGAACTACCACACCAAGAAGCAGCAGCTGGCACGGATGGAGGGCTTCGG
GGAGGGAGGGATGGAGGGAGAGGCCAGTGGCTTGCCCGTGAACGTGACGA
GTGCGGACTTGACAGTGACAGAAGATGAGGAGCAGCAAGTGTGGGTAGAG
CCGGCTCACTTCACGTCGGACGCAGAGAAAGACAGATTGGGTGACCCCGC
CCAAGGCGGCATCAGCATCGTGCAACTCGGGCCCGGACAAGCCGTGCGTC
TGACCGCCATAGCCAAGAAAGGCATAGGGAAAGAGCATGCCAAGTGGTCT
CCTTGTGCTGTCGCCACTTACACCAACGAGCCGATCCTCAGTATCAACAA
GGAGGAGCACGACAAGCTCAGCCTGGAGAAGAAGAAGCAGCTGGTGGACT
GCTGCCCAACCAAAGTCTTCAAGCTCGACGAGCGAGAAAATGTGGTGGTG
GCCCGGCCGCGCAAGTGCATTTTTTGCAACGAGTGCCAGACGGTGTCCAA
GGCACTCAAGGCGCATCAAGACGACGATTTTGTCGTGCATCTGGCAGCGA
ACGAAGAGAAATTTGTCTTTGCCGTGGAGACGACGGGGGCCTTGACAGCA
GGGGAGGTGGTGGAGAGTGCGTTGGAGATAGTGCTGGGGAAGATCACGGA
GGTGCAGACTCAGCTGGTGCACATAGCGAGGACAGGGGTCGTGTAGGGAG
GGATGGAGGGACGGAGGGATTGGGGGAGAGAAAAAGTAAAAGGATTAATT
GGAGCATCGTGTGAGATGAAGGAGGGCGATTG
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protein sequence of NO03G00350.1

>NO03G00350.1-protein ID=NO03G00350.1-protein|Name=NO03G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MPNVRAPKLEILELKDDFIKFILSDTDASVANALRRVMIAEVPTLAIDLV
SFEVNSSVLNDEYLAHRLGLIPLRSTNPRYKKVADLKDFRDCDCDLHCPR
CSVELTLDVNYHTKKQQLARMEGFGEGGMEGEASGLPVNVTSADLTVTED
EEQQVWVEPAHFTSDAEKDRLGDPAQGGISIVQLGPGQAVRLTAIAKKGI
GKEHAKWSPCAVATYTNEPILSINKEEHDKLSLEKKKQLVDCCPTKVFKL
DERENVVVARPRKCIFCNECQTVSKALKAHQDDDFVVHLAANEEKFVFAV
ETTGALTAGEVVESALEIVLGKITEVQTQLVHIARTGVV*
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mRNA from alignment at chr3:112122..113996+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00350.1 ID=NO03G00350.1|Name=NO03G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1875bp|location=Sequence derived from alignment at chr3:112122..113996+ (Nannochloropsis oceanica)
CAGGCTACTACTTGTGCAGCAACCACTGATTTTAGCGCGGGCGGGACTGT
GTGTGGAAAGCTAGGGAGGGACAAGAGTATCTCTCCGCCTTGGTGCCTGC
CTCAGCCCCTGCTCTGTCAACCAGCGGCACCTACACGTAAAGCCACCCTC
TCGACAACGCTTCGACAACCCTAAAGATGCCGAACGTCCGCGCCCCTAAG
CTGGAAATCCTAGAGCTAAAGGTACTTGTCCTTCAATACTCATTCCCCCG
CTTCTTTCTCCCCTGCCCCACCCACCGACCAACCGACATACGCGCCTCAC
ATCACAGGACGACTTTATCAAATTCATTCTCTCCGACACGGATGCCTCTG
TTGCCAATGCCTTGCGGCGGGTGATGATTGCCGAAGTCCCTACCTTGGCC
ATCGATCTTGTGTCGTTCGAAGTGAACTCCTCCGTGCTGAATGACGAGTA
CCTCGCCCATCGCTTGGGTAGGTAGCCACACACAACCAGAGAGCACGCTC
CGTTACCAGACACACATGATCCTCCTCACACTTCCTCCTACTCTCTGTAT
CTTCCACCTTGCAACCGTACAGCTCATCACTTACATACATGCAACGCCTC
TTTTACCCCCTTCCTTTTCCCCCCCTCCCTCCCCTTCCTCCCAGGCCTCA
TTCCCCTCCGCTCTACGAATCCGCGCTACAAGAAGGTGGCTGACCTCAAG
GACTTTCGAGACTGCGATTGTGACTTGCATTGCCCCCGCTGCTCGGTCGA
GCTGACGTTAGATGTGAACTACCACACCAAGAAGCAGCAGCTGGCACGGA
TGGAGGGCTTCGGGGAGGGAGGGATGGAGGGAGAGGCCAGTGGCTTGCCC
GTGAACGTGACGAGTGCGGACTTGACAGTGACAGAAGATGAGGAGCAGCA
AGTGTGGGTAGAGCCGGCTCACTTCACGTCGGACGCAGAGAAAGACAGAT
TGGGGTGAGCGCAGTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTTCC
TTCCTTCCTTCCTCCCTCCCTCCCTCCTTCCTTCCTTCCTTTCTTCTTCT
AGGTATAATTTCCGTAGCCACGACAATTTTATCCACTCACACTCCCCCCT
TCCTCCATTCCTCCCTTCCTCCCTCCCCTCCCTCCCCTCCCCGCAGTGAC
CCCGCCCAAGGCGGCATCAGCATCGTGCAACTCGGGCCCGGACAAGCCGT
GCGTCTGACCGCCATAGCCAAGAAAGGCATAGGGAAAGAGCATGCCAAGT
GGTCTCCTTGTGCTGTCGCCACTTACACCAACGAGCCGATCCTCAGTATC
AACAAGGAGGAGGTAGGCCTCTCCCTTCCTTCTCCTCCCTCCTTCCCTCA
TTCCCTCACCTCCCCCCTCTCAACCCCAACCTGAACCCCCTCCCTCCTCC
AGTCATGTCACGCTCTTTCCCTCCCCCCCTCTTTCCCTGCCTGCCCCCAG
CACGACAAGCTCAGCCTGGAGAAGAAGAAGCAGCTGGTGGACTGCTGCCC
AACCAAAGTCTTCAAGCTCGACGAGCGAGAAAATGTGGTGGTGGCCCGGC
CGCGCAAGTGCATTTTTTGCAACGAGTGCCAGACGGTGTCCAAGGCACTC
AAGGCGCATCAAGACGACGATTTTGTCGTGCATCTGGCAGCGAACGAAGA
GAAATTTGTCTTTGCCGTGGAGACGACGGGGGCCTTGACAGCAGGGGAGG
TGGTGGAGAGTGCGTTGGAGATAGTGCTGGGGAAGATCACGGAGGTGCAG
ACTCAGCTGGTGCACATAGCGAGGACAGGGGTCGTGTAGGGAGGGATGGA
GGGACGGAGGGATTGGGGGAGAGAAAAAGTAAAAGGATTAATTGGAGCAT
CGTGTGAGATGAAGGAGGGCGATTG
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Coding sequence (CDS) from alignment at chr3:112122..113996+

>NO03G00350.1 ID=NO03G00350.1|Name=NO03G00350.1|organism=Nannochloropsis oceanica|type=CDS|length=1020bp|location=Sequence derived from alignment at chr3:112122..113996+ (Nannochloropsis oceanica)
ATGCCGAACGTCCGCGCCCCTAAGCTGGAAATCCTAGAGCTAAAGGACGA
CTTTATCAAATTCATTCTCTCCGACACGGATGCCTCTGTTGCCAATGCCT
TGCGGCGGGTGATGATTGCCGAAGTCCCTACCTTGGCCATCGATCTTGTG
TCGTTCGAAGTGAACTCCTCCGTGCTGAATGACGAGTACCTCGCCCATCG
CTTGGGCCTCATTCCCCTCCGCTCTACGAATCCGCGCTACAAGAAGGTGG
CTGACCTCAAGGACTTTCGAGACTGCGATTGTGACTTGCATTGCCCCCGC
TGCTCGGTCGAGCTGACGTTAGATGTGAACTACCACACCAAGAAGCAGCA
GCTGGCACGGATGGAGGGCTTCGGGGAGGGAGGGATGGAGGGAGAGGCCA
GTGGCTTGCCCGTGAACGTGACGAGTGCGGACTTGACAGTGACAGAAGAT
GAGGAGCAGCAAGTGTGGGTAGAGCCGGCTCACTTCACGTCGGACGCAGA
GAAAGACAGATTGGGTGACCCCGCCCAAGGCGGCATCAGCATCGTGCAAC
TCGGGCCCGGACAAGCCGTGCGTCTGACCGCCATAGCCAAGAAAGGCATA
GGGAAAGAGCATGCCAAGTGGTCTCCTTGTGCTGTCGCCACTTACACCAA
CGAGCCGATCCTCAGTATCAACAAGGAGGAGCACGACAAGCTCAGCCTGG
AGAAGAAGAAGCAGCTGGTGGACTGCTGCCCAACCAAAGTCTTCAAGCTC
GACGAGCGAGAAAATGTGGTGGTGGCCCGGCCGCGCAAGTGCATTTTTTG
CAACGAGTGCCAGACGGTGTCCAAGGCACTCAAGGCGCATCAAGACGACG
ATTTTGTCGTGCATCTGGCAGCGAACGAAGAGAAATTTGTCTTTGCCGTG
GAGACGACGGGGGCCTTGACAGCAGGGGAGGTGGTGGAGAGTGCGTTGGA
GATAGTGCTGGGGAAGATCACGGAGGTGCAGACTCAGCTGGTGCACATAG
CGAGGACAGGGGTCGTGTAG
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Synonyms
Publications