NO03G00340.1, NO03G00340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00340.1
Unique NameNO03G00340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1851
Alignment locationchr3:110176..112026 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:110176..112026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00340.1 vs.
Match: WP_096056477.1 (hypothetical protein [Verrucomicrobia bacterium]; ATC64846.1 hypothetical protein CMV30_13205 [Verrucomicrobia bacterium])

HSP 1 Score: 75.1 bits (183), Expect = 4.700e-10
Identity = 46/138 (33.33%), Postives = 68/138 (49.28%), Query Frame = 0 
Query:    1 MEPIDNNPFPNSWHPLHFLARSGDISALDTLLHENPDTTRLCNLETACGKTPLMLAAEEGHVAMLNWLLDHGAIIDTAQANTGNTALFVAIYQRQVAAMQALLARGSNIAHA-DRWGATPWITAGMSRDPTMFLALFE 138
            + P   +P P    PLH  A+  D++ L  LL   P T    N     G TPL +AA  GH+ +   LLDHGA ++TA    G+T L +A +   +   + LL RG+ +  +    GATP++ A ++    M   L E
Sbjct:   27 VSPPAASPAPPPRFPLHRAAQQNDLATLRALLSAAPSTV---NTPDPHGVTPLFVAAHSGHLEIARLLLDHGAAVNTATNTDGSTPLCIAAHSGHLELARLLLDRGATLEQSTTNTGATPFVLAAINGQTAMMAFLKE 161
The following BLAST results are available for this feature:
BLAST of NO03G00340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_096056477.14.700e-1033.33hypothetical protein [Verrucomicrobia bacterium]; ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00340NO03G00340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00340.1NO03G00340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00340.1.cds1NO03G00340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00340.1 ID=NO03G00340.1|Name=NO03G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1851bp
TGACGTGATTGATGATGCTGACAGGGCGCGAACGGATGTCACTCGAAGGC
CGTGATCGTGATCCTGTGCCTCATCACAGGCAGACCATGTCTAGTGGGCC
TTTGCTTTGCTATTGAGCCTGCGAAGGGGAACCTAATTTTATGTCCTGTT
CCTTCACGATCTCTTCGTCGCCATCCTGTCCCGGTGTGGCCGCTAAATTA
ATCGGCATGGTCACACAACGATAGCAGTTAGGAACGTAAGCTTGGTCCAG
CACGCCTCGAGTCCGAACCAGCGTTGTATGCTTGTGGTTTACTGCATGTT
GGCATGAAGCCATTTACTTTATATGTATCCATACCGTCATGATCTAATCT
TTATCTGCCTCACTCCCTTTTCACTTTGTTTCCCCTTCTCTCCCTATTCT
TCACACTGTAAAAATGCATAACCCTGGCAGCGAGTGAGCCCGTACACGAG
GTGGCTCACCGCGTGTGTCATGGAGCCCATCGACAACAATCCATTTCCCA
ACTCATGGCACCCACTTCACTTTCTTGCCCGGTCCGGCGACATCTCCGCC
TTGGACACCCTCTTACATGAGAACCCCGACACGACGCGCCTCTGCAATCT
CGAGACTGCCTGTGGCAAGACTCCTCTAATGCTTGCCGCCGAGGAAGGGC
ACGTCGCTATGCTGAATTGGCTGCTCGACCATGGCGCCATCATCGATACC
GCCCAGGCCAATACTGGAAACACCGCTTTGTTCGTTGCCATATATCAACG
CCAAGTTGCTGCGATGCAGGCTCTGCTGGCGCGGGGAAGCAATATTGCCC
ACGCAGATCGGTGGGGCGCCACACCCTGGATCACGGCAGGCATGTCCAGG
GACCCAACCATGTTTCTTGCTCTGTTTGAGTACCTGAATAAAACAATTTC
TCGGGAAGAATTGTTAGAAAGCTATCCCCTCTACGCCGCGGGACCGAAGA
CCCCTGTCCTCATGTACCAAGTGCAACGCAACGATGTACATATGCTTCGA
ATGCTCTTGCGCCTCGGTGCCAATCCATACAGTGAGGGCAGCACAAACGA
GGCTATAAAATTAGCGACAGCAGCAGCAGCTAGGGGAGAGAGGGGGGGAA
AAGAGTGTTTGTTTTTGTTGGAGGAGTGGGAGCGAGCCTACGTCCTGGCC
AAGGTCCGGGCGACGGCGGACGCGGCGGGGGAGGCGAGGGCGGGCGGGAA
GGAGAGACCGCGGCAGCTTTCAGCGTGGTTTAAGGAAGAGATGGATGTCA
CCGTACATGGGCAGTATGGGGAGGAGACGGAGGAAGAGGTAAGGATGGGG
TGTGTGACGCGGTGGGTTGTGAAGGTGATGGCAGACGATTTATTTCGGAC
ATTGACTGAGTATATTGGGGAGAGGACGACGGGATTACCATTAGAGGTGG
AGGAAATAAACCAAGAGGAGCTTGATTGTTTATGTGTTGATGAAGACGAC
GGGGAGGAGGCTTTTGAAGACGGGGAGGAGGCGTTTGACTGGTGACACAG
CGTGAGATTGACGGCATATATGTCAAGTAAGGAAACTTATTTTCGCGCGC
AATTGTGCCATTGTTCCGAAAGAGGCCTTCCACAGGGGCCCGAATTAAAG
TTTTGTGGTTGAGCCCACGACTTCTCATGGGCATTGGAAAAGTGTGTAGC
AAACAATATGACTACGCGGATCATCAATAATCATTGACCATGAAACTGGA
TGTAATTAAAGGGACTACAGTGAGATAGACAAGATCGCCGACTTGACGAT
TCCCCACCTGTTCTCGTGAGCTTGGTCACGATGGTTATGTACAGTCGCTA
CCAAAGGGGCGCCTGCCACATGGGAAGACTAAAACTCACTTTGAAACCAC
C
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protein sequence of NO03G00340.1

>NO03G00340.1-protein ID=NO03G00340.1-protein|Name=NO03G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MEPIDNNPFPNSWHPLHFLARSGDISALDTLLHENPDTTRLCNLETACGK
TPLMLAAEEGHVAMLNWLLDHGAIIDTAQANTGNTALFVAIYQRQVAAMQ
ALLARGSNIAHADRWGATPWITAGMSRDPTMFLALFEYLNKTISREELLE
SYPLYAAGPKTPVLMYQVQRNDVHMLRMLLRLGANPYSEGSTNEAIKLAT
AAAARGERGGKECLFLLEEWERAYVLAKVRATADAAGEARAGGKERPRQL
SAWFKEEMDVTVHGQYGEETEEEVRMGCVTRWVVKVMADDLFRTLTEYIG
ERTTGLPLEVEEINQEELDCLCVDEDDGEEAFEDGEEAFDW*
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mRNA from alignment at chr3:110176..112026-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00340.1 ID=NO03G00340.1|Name=NO03G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1851bp|location=Sequence derived from alignment at chr3:110176..112026- (Nannochloropsis oceanica)
TGACGTGATTGATGATGCTGACAGGGCGCGAACGGATGTCACTCGAAGGC
CGTGATCGTGATCCTGTGCCTCATCACAGGCAGACCATGTCTAGTGGGCC
TTTGCTTTGCTATTGAGCCTGCGAAGGGGAACCTAATTTTATGTCCTGTT
CCTTCACGATCTCTTCGTCGCCATCCTGTCCCGGTGTGGCCGCTAAATTA
ATCGGCATGGTCACACAACGATAGCAGTTAGGAACGTAAGCTTGGTCCAG
CACGCCTCGAGTCCGAACCAGCGTTGTATGCTTGTGGTTTACTGCATGTT
GGCATGAAGCCATTTACTTTATATGTATCCATACCGTCATGATCTAATCT
TTATCTGCCTCACTCCCTTTTCACTTTGTTTCCCCTTCTCTCCCTATTCT
TCACACTGTAAAAATGCATAACCCTGGCAGCGAGTGAGCCCGTACACGAG
GTGGCTCACCGCGTGTGTCATGGAGCCCATCGACAACAATCCATTTCCCA
ACTCATGGCACCCACTTCACTTTCTTGCCCGGTCCGGCGACATCTCCGCC
TTGGACACCCTCTTACATGAGAACCCCGACACGACGCGCCTCTGCAATCT
CGAGACTGCCTGTGGCAAGACTCCTCTAATGCTTGCCGCCGAGGAAGGGC
ACGTCGCTATGCTGAATTGGCTGCTCGACCATGGCGCCATCATCGATACC
GCCCAGGCCAATACTGGAAACACCGCTTTGTTCGTTGCCATATATCAACG
CCAAGTTGCTGCGATGCAGGCTCTGCTGGCGCGGGGAAGCAATATTGCCC
ACGCAGATCGGTGGGGCGCCACACCCTGGATCACGGCAGGCATGTCCAGG
GACCCAACCATGTTTCTTGCTCTGTTTGAGTACCTGAATAAAACAATTTC
TCGGGAAGAATTGTTAGAAAGCTATCCCCTCTACGCCGCGGGACCGAAGA
CCCCTGTCCTCATGTACCAAGTGCAACGCAACGATGTACATATGCTTCGA
ATGCTCTTGCGCCTCGGTGCCAATCCATACAGTGAGGGCAGCACAAACGA
GGCTATAAAATTAGCGACAGCAGCAGCAGCTAGGGGAGAGAGGGGGGGAA
AAGAGTGTTTGTTTTTGTTGGAGGAGTGGGAGCGAGCCTACGTCCTGGCC
AAGGTCCGGGCGACGGCGGACGCGGCGGGGGAGGCGAGGGCGGGCGGGAA
GGAGAGACCGCGGCAGCTTTCAGCGTGGTTTAAGGAAGAGATGGATGTCA
CCGTACATGGGCAGTATGGGGAGGAGACGGAGGAAGAGGTAAGGATGGGG
TGTGTGACGCGGTGGGTTGTGAAGGTGATGGCAGACGATTTATTTCGGAC
ATTGACTGAGTATATTGGGGAGAGGACGACGGGATTACCATTAGAGGTGG
AGGAAATAAACCAAGAGGAGCTTGATTGTTTATGTGTTGATGAAGACGAC
GGGGAGGAGGCTTTTGAAGACGGGGAGGAGGCGTTTGACTGGTGACACAG
CGTGAGATTGACGGCATATATGTCAAGTAAGGAAACTTATTTTCGCGCGC
AATTGTGCCATTGTTCCGAAAGAGGCCTTCCACAGGGGCCCGAATTAAAG
TTTTGTGGTTGAGCCCACGACTTCTCATGGGCATTGGAAAAGTGTGTAGC
AAACAATATGACTACGCGGATCATCAATAATCATTGACCATGAAACTGGA
TGTAATTAAAGGGACTACAGTGAGATAGACAAGATCGCCGACTTGACGAT
TCCCCACCTGTTCTCGTGAGCTTGGTCACGATGGTTATGTACAGTCGCTA
CCAAAGGGGCGCCTGCCACATGGGAAGACTAAAACTCACTTTGAAACCAC
C
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Coding sequence (CDS) from alignment at chr3:110176..112026-

>NO03G00340.1 ID=NO03G00340.1|Name=NO03G00340.1|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at chr3:110176..112026- (Nannochloropsis oceanica)
ATGGAGCCCATCGACAACAATCCATTTCCCAACTCATGGCACCCACTTCA
CTTTCTTGCCCGGTCCGGCGACATCTCCGCCTTGGACACCCTCTTACATG
AGAACCCCGACACGACGCGCCTCTGCAATCTCGAGACTGCCTGTGGCAAG
ACTCCTCTAATGCTTGCCGCCGAGGAAGGGCACGTCGCTATGCTGAATTG
GCTGCTCGACCATGGCGCCATCATCGATACCGCCCAGGCCAATACTGGAA
ACACCGCTTTGTTCGTTGCCATATATCAACGCCAAGTTGCTGCGATGCAG
GCTCTGCTGGCGCGGGGAAGCAATATTGCCCACGCAGATCGGTGGGGCGC
CACACCCTGGATCACGGCAGGCATGTCCAGGGACCCAACCATGTTTCTTG
CTCTGTTTGAGTACCTGAATAAAACAATTTCTCGGGAAGAATTGTTAGAA
AGCTATCCCCTCTACGCCGCGGGACCGAAGACCCCTGTCCTCATGTACCA
AGTGCAACGCAACGATGTACATATGCTTCGAATGCTCTTGCGCCTCGGTG
CCAATCCATACAGTGAGGGCAGCACAAACGAGGCTATAAAATTAGCGACA
GCAGCAGCAGCTAGGGGAGAGAGGGGGGGAAAAGAGTGTTTGTTTTTGTT
GGAGGAGTGGGAGCGAGCCTACGTCCTGGCCAAGGTCCGGGCGACGGCGG
ACGCGGCGGGGGAGGCGAGGGCGGGCGGGAAGGAGAGACCGCGGCAGCTT
TCAGCGTGGTTTAAGGAAGAGATGGATGTCACCGTACATGGGCAGTATGG
GGAGGAGACGGAGGAAGAGGTAAGGATGGGGTGTGTGACGCGGTGGGTTG
TGAAGGTGATGGCAGACGATTTATTTCGGACATTGACTGAGTATATTGGG
GAGAGGACGACGGGATTACCATTAGAGGTGGAGGAAATAAACCAAGAGGA
GCTTGATTGTTTATGTGTTGATGAAGACGACGGGGAGGAGGCTTTTGAAG
ACGGGGAGGAGGCGTTTGACTGGTGA
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Synonyms
Publications