NO03G00190.1, NO03G00190.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G00190.1
Unique Name	NO03G00190.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2391
Alignment location	chr3:49435..51825 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:49435..51825 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO03G00190.1 vs.
Match: XP_004346763.2 (hypothetical protein CAOG_05078 [Capsaspora owczarzaki ATCC 30864]; KJE94435.1 hypothetical protein CAOG_005078 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 77.0 bits (188), Expect = 2.200e-10
Identity = 72/272 (26.47%), Postives = 126/272 (46.32%), Query Frame = 0

Query:  238 IALACLFLALCFACIF----HWRSHKIMRFSQVNILMYMTVAGFVALCGVPLAAVNTQEA-CSLRPWMTIIPLNFMFALLFGKTWRIFRLMNNKQLKAIRIKETYVLYVAFLLTLPEILIHGFYFLLFPP----RLQLTR-VINDYTFLFECTGGSPAKNIFDGLHLAYATIILLLGCYVADKSASLTTLFNEGKYILFAIYTCFVLSVIIVPASFAVATDPQTGFILRTLGVTLAVTGTISAIILPKVNLILSGVDLSLDDGKTNTTNTIK 500
            + LA +F+ + F  +     +W S +I+  S    L  +     ++   + LAA    +A C+  PW+  +   F+F  LF KT+RI R+ NN  +K IR+K+T + +  F + L   L    +  +  P    R+ +T    N   F+ +      + N FD   L    + L+ G Y+A K     T FNE KYI+ A+Y    ++V++         D    ++L ++ V   V+  +  I +PKV+L+ +G      +  T+T +  K
Sbjct: 1233 VVLAAIFILIAFGFLLFLMRNWSS-RIIVASSPTFLALILFGALLSYVWIFLAAPTPTDALCAAMPWVRHLGFCFVFGALFLKTYRIDRIFNNDAIKRIRMKDTVLFHYMFRIVLMFALYLAIWTGISRPISEVRVDITSDQTNQGVFVTQQLVPRCSSNWFDSAILIVELMFLIWGLYLAIKVRHTPTAFNESKYIVVAVYNFVFVAVVLQIILQTAIKDRDIAYVLESIYVIFTVSAVVLLIFVPKVSLVRNGGIAETRESYTHTHSAPK 1503

The following BLAST results are available for this feature:

BLAST of NO03G00190.1 vs.

BLAST of NO03G00190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_004346763.2	2.200e-10	26.47	hypothetical protein CAOG_05078 [Capsaspora owczar...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G00190	NO03G00190	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G00190.1	NO03G00190.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G00190.1.cds1	NO03G00190.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:49435..51825+
coding sequence from alignment at chr3:49435..51825+

mRNA sequence

>NO03G00190.1 ID=NO03G00190.1|Name=NO03G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2391bp
CTCAATTTTCGTCACATCCCAAACACACATTCCCAGCACAGCCCCAACTT
CTTTCGCCTCCATCTAAGTGTCCTGATAGGCAATCAAAATGAGACCCTCC
CTTTGCTTTATAAGCAAATGTTTCATTCCCGGCCTCGCTGTTATGGTGCT
TCTGTCGTGCATCTCCACTTTGTAAGCACCATCCCTTTTTCACTTCATAC
TTTCATTTTTGGGGCATGTTCCCCTCATAACCATTCACCCCTCATATATA
TGTTCAACAATAAGTAATGCTAGAATGTCTCAGCCTACCTCGGATGTTCG
CATAGAGATGTGGTCCTTCCTCGGTCCTGAGAAGCCCTCCTCGGATGCCC
GCTTTCGCATGGCCCATCGCCAGCTCGATGTTGCGAGCAACAAGCCGCGC
ACGGGACCGGCAATTGCACCACGCCCCGCCACGGATACCTATGACATTGG
GGGACCAGCTCCTATATGCTGGAAGACTGTCGATTCCATTGTTTCGCGCC
TGGCTTCCTGCCCGGCAGGCCTTGCTGTAGAATTCTTGCAGACGCCGCCC
ACAACCGTCTTTGCTAATGATGATTACCTCACTACCTACAAGATAATAAT
TGATCCTCTGAGCTGGCGAGTCATCCCTGTCAATGAAAATGGCACCAGTT
ATGACGTGCCGCACGCAATTATTCGCTCATGCCGCAACAAGGTGGGGTTT
TGCACGCCTTTCATCGAGGACATGCCGGGGCTCTCCTTTTCCACCCTGCC
CGTGGCCGGAAACTTGAGTGCTTTCCAGCAAAATCGTAGCAGTTCTACAT
TCACCTCATCTGTGAAGTTCGAGCCCGGCTCATACACAAATATTGCCCAC
TTGCAGCTTTGGGGCCGGGACGCTACCGGTGAGGATGCGAAGTATGACAT
TGCCGCCGCCTTTGTGCGGGACGTGCTGCCAGCCCGCAAGATCCTGGCGG
TGGCACCAGCGGTTCAATACACCATGGCGGCTATTATTGCACTTGCTTGT
CTTTTTCTGGCCTTGTGCTTCGCTTGCATATTTCACTGGCGCTCGCACAA
GATCATGCGTTTTTCGCAAGTCAACATCTTGATGTATATGACGGTGGCGG
GCTTCGTGGCCTTATGCGGGGTGCCCCTGGCAGCAGTCAACACCCAAGAA
GCTTGCTCCCTTCGCCCTTGGATGACCATCATCCCCTTGAACTTTATGTT
TGCTTTGCTGTTCGGCAAGACATGGCGGATATTCCGGCTGATGAATAACA
AGCAGCTGAAGGCCATTAGAATCAAGGAGACCTACGTCCTGTATGTTGCG
TTCCTCCTGACCCTGCCCGAGATTCTCATCCACGGCTTCTACTTCCTGTT
ATTCCCTCCACGCTTGCAACTCACCCGGGTCATCAATGACTATACGTTCC
TTTTCGAGTGCACCGGAGGTTCTCCCGCCAAGAACATTTTTGACGGCCTT
CATCTAGCCTATGCCACGATTATTCTCCTCCTGGGGTGCTACGTTGCCGA
CAAATCCGCCTCCCTCACCACGCTCTTCAACGAAGGAAAGTACATCCTCT
TCGCCATTTACACATGTTTTGTCTTGTCTGTCATCATCGTCCCTGCTTCC
TTCGCAGTAGCCACGGACCCCCAGACAGGCTTCATCTTGCGGACTCTCGG
CGTGACTTTGGCCGTGACTGGCACCATAAGTGCTATTATTCTACCCAAGG
TCAATCTTATCCTCTCGGGGGTCGACCTCTCGCTCGATGATGGCAAGACA
AACACTACGAATACTATCAAGTCGAACAACACCCAAAGCGGGTCAAAGGC
CACGTCCGCTAGTACTATGGCAGCTCCGACGCCGGCAGGACCCGCGAGGG
ATATCATCCAAGTCAAGAATCGCGTGCCCTCTGCTGTAATGGAAACGCTT
GGCGACGCCTTGACGGCAGGAAACAAAGTTGTTGACCGTCAAATGCAAGG
ATTTGCACTCCAGCGCCCAGATTGGGATACGTGCGTGGATCAAGTCCGCA
GCTTGAACGAGACTTTGCAGCGCTGTGTCTTGAACAGTAACGCACAGGGC
ACCGCGAACGGTGGAACTAGTGGTTTTTCTGCCAAAGTGGCTCCTTCCAA
CATCTGAGGACCACTTTCATAGTAATCAAGTACCTACATGTCAATCAAAT
ATAATTAATTGAAGTAGCTTAATTTCAGATCGAGTGAGTGGTTTCCACTT
GAGTGCACAGTGAGAGCCTGTGAGAGCAGACATCGCGCGTCAAAATGTGC
GCTTGCTTTTTTATGTTTTATCAGCCGCTGGGTGAGAAATTCGCAAAAAA
TAAGCTTGACAGAGGAAGTCCCTATCCTCAAGCCGGAAGCACCTATGTCA
GGGAGTCAAACAAAAAGAGGAAATAAGTACAGAGAACCACG

protein sequence of NO03G00190.1

>NO03G00190.1-protein ID=NO03G00190.1-protein|Name=NO03G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=611bp
MSQPTSDVRIEMWSFLGPEKPSSDARFRMAHRQLDVASNKPRTGPAIAPR
PATDTYDIGGPAPICWKTVDSIVSRLASCPAGLAVEFLQTPPTTVFANDD
YLTTYKIIIDPLSWRVIPVNENGTSYDVPHAIIRSCRNKVGFCTPFIEDM
PGLSFSTLPVAGNLSAFQQNRSSSTFTSSVKFEPGSYTNIAHLQLWGRDA
TGEDAKYDIAAAFVRDVLPARKILAVAPAVQYTMAAIIALACLFLALCFA
CIFHWRSHKIMRFSQVNILMYMTVAGFVALCGVPLAAVNTQEACSLRPWM
TIIPLNFMFALLFGKTWRIFRLMNNKQLKAIRIKETYVLYVAFLLTLPEI
LIHGFYFLLFPPRLQLTRVINDYTFLFECTGGSPAKNIFDGLHLAYATII
LLLGCYVADKSASLTTLFNEGKYILFAIYTCFVLSVIIVPASFAVATDPQ
TGFILRTLGVTLAVTGTISAIILPKVNLILSGVDLSLDDGKTNTTNTIKS
NNTQSGSKATSASTMAAPTPAGPARDIIQVKNRVPSAVMETLGDALTAGN
KVVDRQMQGFALQRPDWDTCVDQVRSLNETLQRCVLNSNAQGTANGGTSG
FSAKVAPSNI*

mRNA from alignment at chr3:49435..51825+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G00190.1 ID=NO03G00190.1|Name=NO03G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2391bp|location=Sequence derived from alignment at chr3:49435..51825+ (Nannochloropsis oceanica)
CTCAATTTTCGTCACATCCCAAACACACATTCCCAGCACAGCCCCAACTT
CTTTCGCCTCCATCTAAGTGTCCTGATAGGCAATCAAAATGAGACCCTCC
CTTTGCTTTATAAGCAAATGTTTCATTCCCGGCCTCGCTGTTATGGTGCT
TCTGTCGTGCATCTCCACTTTGTAAGCACCATCCCTTTTTCACTTCATAC
TTTCATTTTTGGGGCATGTTCCCCTCATAACCATTCACCCCTCATATATA
TGTTCAACAATAAGTAATGCTAGAATGTCTCAGCCTACCTCGGATGTTCG
CATAGAGATGTGGTCCTTCCTCGGTCCTGAGAAGCCCTCCTCGGATGCCC
GCTTTCGCATGGCCCATCGCCAGCTCGATGTTGCGAGCAACAAGCCGCGC
ACGGGACCGGCAATTGCACCACGCCCCGCCACGGATACCTATGACATTGG
GGGACCAGCTCCTATATGCTGGAAGACTGTCGATTCCATTGTTTCGCGCC
TGGCTTCCTGCCCGGCAGGCCTTGCTGTAGAATTCTTGCAGACGCCGCCC
ACAACCGTCTTTGCTAATGATGATTACCTCACTACCTACAAGATAATAAT
TGATCCTCTGAGCTGGCGAGTCATCCCTGTCAATGAAAATGGCACCAGTT
ATGACGTGCCGCACGCAATTATTCGCTCATGCCGCAACAAGGTGGGGTTT
TGCACGCCTTTCATCGAGGACATGCCGGGGCTCTCCTTTTCCACCCTGCC
CGTGGCCGGAAACTTGAGTGCTTTCCAGCAAAATCGTAGCAGTTCTACAT
TCACCTCATCTGTGAAGTTCGAGCCCGGCTCATACACAAATATTGCCCAC
TTGCAGCTTTGGGGCCGGGACGCTACCGGTGAGGATGCGAAGTATGACAT
TGCCGCCGCCTTTGTGCGGGACGTGCTGCCAGCCCGCAAGATCCTGGCGG
TGGCACCAGCGGTTCAATACACCATGGCGGCTATTATTGCACTTGCTTGT
CTTTTTCTGGCCTTGTGCTTCGCTTGCATATTTCACTGGCGCTCGCACAA
GATCATGCGTTTTTCGCAAGTCAACATCTTGATGTATATGACGGTGGCGG
GCTTCGTGGCCTTATGCGGGGTGCCCCTGGCAGCAGTCAACACCCAAGAA
GCTTGCTCCCTTCGCCCTTGGATGACCATCATCCCCTTGAACTTTATGTT
TGCTTTGCTGTTCGGCAAGACATGGCGGATATTCCGGCTGATGAATAACA
AGCAGCTGAAGGCCATTAGAATCAAGGAGACCTACGTCCTGTATGTTGCG
TTCCTCCTGACCCTGCCCGAGATTCTCATCCACGGCTTCTACTTCCTGTT
ATTCCCTCCACGCTTGCAACTCACCCGGGTCATCAATGACTATACGTTCC
TTTTCGAGTGCACCGGAGGTTCTCCCGCCAAGAACATTTTTGACGGCCTT
CATCTAGCCTATGCCACGATTATTCTCCTCCTGGGGTGCTACGTTGCCGA
CAAATCCGCCTCCCTCACCACGCTCTTCAACGAAGGAAAGTACATCCTCT
TCGCCATTTACACATGTTTTGTCTTGTCTGTCATCATCGTCCCTGCTTCC
TTCGCAGTAGCCACGGACCCCCAGACAGGCTTCATCTTGCGGACTCTCGG
CGTGACTTTGGCCGTGACTGGCACCATAAGTGCTATTATTCTACCCAAGG
TCAATCTTATCCTCTCGGGGGTCGACCTCTCGCTCGATGATGGCAAGACA
AACACTACGAATACTATCAAGTCGAACAACACCCAAAGCGGGTCAAAGGC
CACGTCCGCTAGTACTATGGCAGCTCCGACGCCGGCAGGACCCGCGAGGG
ATATCATCCAAGTCAAGAATCGCGTGCCCTCTGCTGTAATGGAAACGCTT
GGCGACGCCTTGACGGCAGGAAACAAAGTTGTTGACCGTCAAATGCAAGG
ATTTGCACTCCAGCGCCCAGATTGGGATACGTGCGTGGATCAAGTCCGCA
GCTTGAACGAGACTTTGCAGCGCTGTGTCTTGAACAGTAACGCACAGGGC
ACCGCGAACGGTGGAACTAGTGGTTTTTCTGCCAAAGTGGCTCCTTCCAA
CATCTGAGGACCACTTTCATAGTAATCAAGTACCTACATGTCAATCAAAT
ATAATTAATTGAAGTAGCTTAATTTCAGATCGAGTGAGTGGTTTCCACTT
GAGTGCACAGTGAGAGCCTGTGAGAGCAGACATCGCGCGTCAAAATGTGC
GCTTGCTTTTTTATGTTTTATCAGCCGCTGGGTGAGAAATTCGCAAAAAA
TAAGCTTGACAGAGGAAGTCCCTATCCTCAAGCCGGAAGCACCTATGTCA
GGGAGTCAAACAAAAAGAGGAAATAAGTACAGAGAACCACG

Coding sequence (CDS) from alignment at chr3:49435..51825+

>NO03G00190.1 ID=NO03G00190.1|Name=NO03G00190.1|organism=Nannochloropsis oceanica|type=CDS|length=1833bp|location=Sequence derived from alignment at chr3:49435..51825+ (Nannochloropsis oceanica)
ATGTCTCAGCCTACCTCGGATGTTCGCATAGAGATGTGGTCCTTCCTCGG
TCCTGAGAAGCCCTCCTCGGATGCCCGCTTTCGCATGGCCCATCGCCAGC
TCGATGTTGCGAGCAACAAGCCGCGCACGGGACCGGCAATTGCACCACGC
CCCGCCACGGATACCTATGACATTGGGGGACCAGCTCCTATATGCTGGAA
GACTGTCGATTCCATTGTTTCGCGCCTGGCTTCCTGCCCGGCAGGCCTTG
CTGTAGAATTCTTGCAGACGCCGCCCACAACCGTCTTTGCTAATGATGAT
TACCTCACTACCTACAAGATAATAATTGATCCTCTGAGCTGGCGAGTCAT
CCCTGTCAATGAAAATGGCACCAGTTATGACGTGCCGCACGCAATTATTC
GCTCATGCCGCAACAAGGTGGGGTTTTGCACGCCTTTCATCGAGGACATG
CCGGGGCTCTCCTTTTCCACCCTGCCCGTGGCCGGAAACTTGAGTGCTTT
CCAGCAAAATCGTAGCAGTTCTACATTCACCTCATCTGTGAAGTTCGAGC
CCGGCTCATACACAAATATTGCCCACTTGCAGCTTTGGGGCCGGGACGCT
ACCGGTGAGGATGCGAAGTATGACATTGCCGCCGCCTTTGTGCGGGACGT
GCTGCCAGCCCGCAAGATCCTGGCGGTGGCACCAGCGGTTCAATACACCA
TGGCGGCTATTATTGCACTTGCTTGTCTTTTTCTGGCCTTGTGCTTCGCT
TGCATATTTCACTGGCGCTCGCACAAGATCATGCGTTTTTCGCAAGTCAA
CATCTTGATGTATATGACGGTGGCGGGCTTCGTGGCCTTATGCGGGGTGC
CCCTGGCAGCAGTCAACACCCAAGAAGCTTGCTCCCTTCGCCCTTGGATG
ACCATCATCCCCTTGAACTTTATGTTTGCTTTGCTGTTCGGCAAGACATG
GCGGATATTCCGGCTGATGAATAACAAGCAGCTGAAGGCCATTAGAATCA
AGGAGACCTACGTCCTGTATGTTGCGTTCCTCCTGACCCTGCCCGAGATT
CTCATCCACGGCTTCTACTTCCTGTTATTCCCTCCACGCTTGCAACTCAC
CCGGGTCATCAATGACTATACGTTCCTTTTCGAGTGCACCGGAGGTTCTC
CCGCCAAGAACATTTTTGACGGCCTTCATCTAGCCTATGCCACGATTATT
CTCCTCCTGGGGTGCTACGTTGCCGACAAATCCGCCTCCCTCACCACGCT
CTTCAACGAAGGAAAGTACATCCTCTTCGCCATTTACACATGTTTTGTCT
TGTCTGTCATCATCGTCCCTGCTTCCTTCGCAGTAGCCACGGACCCCCAG
ACAGGCTTCATCTTGCGGACTCTCGGCGTGACTTTGGCCGTGACTGGCAC
CATAAGTGCTATTATTCTACCCAAGGTCAATCTTATCCTCTCGGGGGTCG
ACCTCTCGCTCGATGATGGCAAGACAAACACTACGAATACTATCAAGTCG
AACAACACCCAAAGCGGGTCAAAGGCCACGTCCGCTAGTACTATGGCAGC
TCCGACGCCGGCAGGACCCGCGAGGGATATCATCCAAGTCAAGAATCGCG
TGCCCTCTGCTGTAATGGAAACGCTTGGCGACGCCTTGACGGCAGGAAAC
AAAGTTGTTGACCGTCAAATGCAAGGATTTGCACTCCAGCGCCCAGATTG
GGATACGTGCGTGGATCAAGTCCGCAGCTTGAACGAGACTTTGCAGCGCT
GTGTCTTGAACAGTAACGCACAGGGCACCGCGAACGGTGGAACTAGTGGT
TTTTCTGCCAAAGTGGCTCCTTCCAACATCTGA

Synonyms

Publications