NO03G00180.1, NO03G00180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00180.1
Unique NameNO03G00180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1950
Alignment locationchr3:46472..48421 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:46472..48421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00180.1 vs.
Match: EWM29997.1 (major intrinsic protein [Nannochloropsis gaditana])

HSP 1 Score: 243.8 bits (621), Expect = 1.500e-60
Identity = 148/280 (52.86%), Postives = 193/280 (68.93%), Query Frame = 0 
Query:    9 EAKQPLLSAQTDQRGAIDDQSGEAGTVDAQALQDKQQPPANQHSEEANL--------EEQQAESRPRHDR-LAQIKQYCAHAFSILQELLAIPIMEALGTLTLTLVVGLITRPAAATAPLTAALAIAAVLLAMIHAGARISGAHYNPAVTFALVLLGCTSPFQFLVYVGSQLAGAIGGAHLAKALASPDPLADPFLQGGINGKLALVEISYTFALVFVILHTVLARTQQPNSFSGAAICATIAAAAAVGAVMNPAISTGLYVAG--MSEERAGGKGGEEG 278
            E+KQPL+ AQ        D   +   +++QA+ +++   A   + E N         +++ +E   +H R L    Q C+  F+ILQ LLA+P+ EALGTLTLTLVVGL++RPAA    LTAA+ +AAVLLAMI+ GA ISGAHYNPAVTFAL+L+G  SPF+ LVY+ SQ  GAIGGA+LA+ LA+ D LADPFL  G+ G+LALVEIS+T+ALV V++HT  AR QQPN+++G AICAT+   A++GAVMNPA+S GLYVA     E   GG GG  G
Sbjct:   31 ESKQPLMPAQ--------DNKVKDNVIESQAMSEEETASAGHSNAERNKSHLSEEHGDKKVSEGHRKHRRYLTAGAQCCSQTFTILQNLLAVPMTEALGTLTLTLVVGLLSRPAAGVDSLTAAIGVAAVLLAMINTGAPISGAHYNPAVTFALLLIGRVSPFRALVYIASQTVGAIGGAYLARGLAASDQLADPFLPEGVTGELALVEISFTYALVMVVIHTAFARAQQPNAYAGVAICATLVTGASLGAVMNPAVSAGLYVAARHKDEGEGGGAGGGGG 302
The following BLAST results are available for this feature:
BLAST of NO03G00180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29997.11.500e-6052.86major intrinsic protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00180NO03G00180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00180.1NO03G00180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00180.1.cds1NO03G00180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00180.1 ID=NO03G00180.1|Name=NO03G00180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1950bp
ATGCCGCCCGCTCTGGACATCAAAGAGGCCAAGCAACCCTTGTTATCGGC
CCAGACCGATCAAAGAGGGGCGATCGATGACCAAAGCGGTGAGGCGGGTA
CCGTGGACGCTCAAGCGCTGCAAGACAAGCAGCAACCTCCTGCCAATCAG
CACAGTGAGGAGGCTAATCTGGAGGAGCAGCAAGCCGAGTCCAGACCTAG
ACATGACCGTCTTGCTCAAATCAAGCAATATTGTGCCCATGCCTTTTCTA
TTCTTCAAGAGCTTCTTGCAATCCCCATCATGGAAGCCTTGGGCACCTTG
ACATTGACCCTTGTGGTCGGCCTTATCACCCGCCCCGCCGCCGCTACTGC
CCCACTAACCGCCGCGTTAGCCATTGCCGCCGTCTTACTGGCGATGATTC
ACGCTGGAGCCCGCATTTCAGGCGCGCATTACAACCCAGCAGTAACATTT
GCTTTGGTCCTGCTGGGCTGCACATCTCCTTTCCAATTCTTGGTCTACGT
AGGGAGTCAACTCGCCGGGGCCATCGGCGGCGCCCACCTAGCAAAGGCTC
TCGCTTCTCCAGATCCACTTGCCGACCCGTTTTTGCAGGGGGGCATTAAT
GGAAAATTAGCGCTGGTAGAGATATCTTATACCTTTGCTTTGGTCTTCGT
GATCTTACACACGGTGCTCGCCCGCACTCAGCAGCCCAATAGTTTTTCAG
GAGCTGCCATCTGTGCCACGATCGCGGCGGCGGCTGCTGTCGGTGCTGTC
ATGAATCCCGCGATATCGACGGGTTTATATGTGGCGGGCATGAGTGAGGA
GCGCGCGGGGGGGAAAGGGGGGGAGGAGGGGCTGTGGATTCGCTGGTTGC
TGCCCATGGTGGGGGCCTTGGTAGCCACATGCCTGTTTTATTTGACAAAT
CCCATGGATGCCATGTTCCCGCCAGGCCAGGACGAGGCAGCCGCCGCCGC
TGCTGCAGCAGCAGCAGCAGCAATGTCGTCGCCTAGGATCGGAAGAAGTG
GCATGGCAGGAGGAGTCGGAGGGGGAGGTGGGCGGACACCCCTCCTCCGC
GATGGTTCCTCGTTCTCGTCGGTCATCTCTTCATACTCCCATGTGCTTTT
CAAAGTCTCGCGCGTCTTGTCCGTGTATCTGATGGAGTTTCAAGGCACCT
TCCTCATTACCCTCACCATTATCCTCTCGCTCACTGCTTCCTCCTCCCCT
TCCTCCCTCGCTCCCTCCCCCGCCGCCACTGCCGGCCTGCTCCTTACGGG
CCTCGTTTTCACCGGAGGGTACATCAGCGGTGCTCATCTTAATCCAGCCG
TGACCTTCGGCGTTTTCCTCTTCCGTCCTCGACGAAGTGACGTGCCCAAG
GTGTTAGCCTACGTGGCTGTCCAAGTGCTCGCCTCTGTTTTCGCAACAGG
AGCCACTCGCCTCGCCCTCGGCCATGCCGCTTGTCAAACCGCCCTCCCCT
TTCCGCAGGCTCCGCATAAGTGGCAACAAGCCCTGGGGGTCGAGACCGTG
TGTACAGCCCTCCTTGTCCTCGTTGTCCTCCTACTAGGTGCGGCGGGCGC
GCAGGGGCATCCGTACTATGGGCTGGCGATCGGTGCTGCTTTAACGAGTG
GGTTGTATGCTGCAGGGTCTATCTCGGGAGGAGGATTAAATCCTGCGGTG
GCCTCGGGATTGTACGCCCTGAATGCGACGAAGGGACAGGGCGAGGAGGC
GTGGATTTATTGGATTGGGCCTTTATGTGGATCTGTGGTGGGGGTTTTGT
TGGCGGGGTGCTTGGCGCCTCGGGGATGGGCGATGGGAAGAAGGAGGGCG
ATGGAGAGGAGGGAGGAGGAGGAGGTGAAAGAAGAGGAGGAAGAAGGAGA
CGAGGACGAAGGCAAGGAGGAATGGATGGAGAAGGGGGAGATAACTGTGA
CGGAGGAAGAGGAGGGAAAGAAGAAGGAGGAGGAAGTAGCTGCGACGTAG
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protein sequence of NO03G00180.1

>NO03G00180.1-protein ID=NO03G00180.1-protein|Name=NO03G00180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=650bp
MPPALDIKEAKQPLLSAQTDQRGAIDDQSGEAGTVDAQALQDKQQPPANQ
HSEEANLEEQQAESRPRHDRLAQIKQYCAHAFSILQELLAIPIMEALGTL
TLTLVVGLITRPAAATAPLTAALAIAAVLLAMIHAGARISGAHYNPAVTF
ALVLLGCTSPFQFLVYVGSQLAGAIGGAHLAKALASPDPLADPFLQGGIN
GKLALVEISYTFALVFVILHTVLARTQQPNSFSGAAICATIAAAAAVGAV
MNPAISTGLYVAGMSEERAGGKGGEEGLWIRWLLPMVGALVATCLFYLTN
PMDAMFPPGQDEAAAAAAAAAAAAMSSPRIGRSGMAGGVGGGGGRTPLLR
DGSSFSSVISSYSHVLFKVSRVLSVYLMEFQGTFLITLTIILSLTASSSP
SSLAPSPAATAGLLLTGLVFTGGYISGAHLNPAVTFGVFLFRPRRSDVPK
VLAYVAVQVLASVFATGATRLALGHAACQTALPFPQAPHKWQQALGVETV
CTALLVLVVLLLGAAGAQGHPYYGLAIGAALTSGLYAAGSISGGGLNPAV
ASGLYALNATKGQGEEAWIYWIGPLCGSVVGVLLAGCLAPRGWAMGRRRA
MERREEEEVKEEEEEGDEDEGKEEWMEKGEITVTEEEEGKKKEEEVAAT*
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mRNA from alignment at chr3:46472..48421+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00180.1 ID=NO03G00180.1|Name=NO03G00180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1950bp|location=Sequence derived from alignment at chr3:46472..48421+ (Nannochloropsis oceanica)
ATGCCGCCCGCTCTGGACATCAAAGAGGCCAAGCAACCCTTGTTATCGGC
CCAGACCGATCAAAGAGGGGCGATCGATGACCAAAGCGGTGAGGCGGGTA
CCGTGGACGCTCAAGCGCTGCAAGACAAGCAGCAACCTCCTGCCAATCAG
CACAGTGAGGAGGCTAATCTGGAGGAGCAGCAAGCCGAGTCCAGACCTAG
ACATGACCGTCTTGCTCAAATCAAGCAATATTGTGCCCATGCCTTTTCTA
TTCTTCAAGAGCTTCTTGCAATCCCCATCATGGAAGCCTTGGGCACCTTG
ACATTGACCCTTGTGGTCGGCCTTATCACCCGCCCCGCCGCCGCTACTGC
CCCACTAACCGCCGCGTTAGCCATTGCCGCCGTCTTACTGGCGATGATTC
ACGCTGGAGCCCGCATTTCAGGCGCGCATTACAACCCAGCAGTAACATTT
GCTTTGGTCCTGCTGGGCTGCACATCTCCTTTCCAATTCTTGGTCTACGT
AGGGAGTCAACTCGCCGGGGCCATCGGCGGCGCCCACCTAGCAAAGGCTC
TCGCTTCTCCAGATCCACTTGCCGACCCGTTTTTGCAGGGGGGCATTAAT
GGAAAATTAGCGCTGGTAGAGATATCTTATACCTTTGCTTTGGTCTTCGT
GATCTTACACACGGTGCTCGCCCGCACTCAGCAGCCCAATAGTTTTTCAG
GAGCTGCCATCTGTGCCACGATCGCGGCGGCGGCTGCTGTCGGTGCTGTC
ATGAATCCCGCGATATCGACGGGTTTATATGTGGCGGGCATGAGTGAGGA
GCGCGCGGGGGGGAAAGGGGGGGAGGAGGGGCTGTGGATTCGCTGGTTGC
TGCCCATGGTGGGGGCCTTGGTAGCCACATGCCTGTTTTATTTGACAAAT
CCCATGGATGCCATGTTCCCGCCAGGCCAGGACGAGGCAGCCGCCGCCGC
TGCTGCAGCAGCAGCAGCAGCAATGTCGTCGCCTAGGATCGGAAGAAGTG
GCATGGCAGGAGGAGTCGGAGGGGGAGGTGGGCGGACACCCCTCCTCCGC
GATGGTTCCTCGTTCTCGTCGGTCATCTCTTCATACTCCCATGTGCTTTT
CAAAGTCTCGCGCGTCTTGTCCGTGTATCTGATGGAGTTTCAAGGCACCT
TCCTCATTACCCTCACCATTATCCTCTCGCTCACTGCTTCCTCCTCCCCT
TCCTCCCTCGCTCCCTCCCCCGCCGCCACTGCCGGCCTGCTCCTTACGGG
CCTCGTTTTCACCGGAGGGTACATCAGCGGTGCTCATCTTAATCCAGCCG
TGACCTTCGGCGTTTTCCTCTTCCGTCCTCGACGAAGTGACGTGCCCAAG
GTGTTAGCCTACGTGGCTGTCCAAGTGCTCGCCTCTGTTTTCGCAACAGG
AGCCACTCGCCTCGCCCTCGGCCATGCCGCTTGTCAAACCGCCCTCCCCT
TTCCGCAGGCTCCGCATAAGTGGCAACAAGCCCTGGGGGTCGAGACCGTG
TGTACAGCCCTCCTTGTCCTCGTTGTCCTCCTACTAGGTGCGGCGGGCGC
GCAGGGGCATCCGTACTATGGGCTGGCGATCGGTGCTGCTTTAACGAGTG
GGTTGTATGCTGCAGGGTCTATCTCGGGAGGAGGATTAAATCCTGCGGTG
GCCTCGGGATTGTACGCCCTGAATGCGACGAAGGGACAGGGCGAGGAGGC
GTGGATTTATTGGATTGGGCCTTTATGTGGATCTGTGGTGGGGGTTTTGT
TGGCGGGGTGCTTGGCGCCTCGGGGATGGGCGATGGGAAGAAGGAGGGCG
ATGGAGAGGAGGGAGGAGGAGGAGGTGAAAGAAGAGGAGGAAGAAGGAGA
CGAGGACGAAGGCAAGGAGGAATGGATGGAGAAGGGGGAGATAACTGTGA
CGGAGGAAGAGGAGGGAAAGAAGAAGGAGGAGGAAGTAGCTGCGACGTAG
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Coding sequence (CDS) from alignment at chr3:46472..48421+

>NO03G00180.1 ID=NO03G00180.1|Name=NO03G00180.1|organism=Nannochloropsis oceanica|type=CDS|length=1950bp|location=Sequence derived from alignment at chr3:46472..48421+ (Nannochloropsis oceanica)
ATGCCGCCCGCTCTGGACATCAAAGAGGCCAAGCAACCCTTGTTATCGGC
CCAGACCGATCAAAGAGGGGCGATCGATGACCAAAGCGGTGAGGCGGGTA
CCGTGGACGCTCAAGCGCTGCAAGACAAGCAGCAACCTCCTGCCAATCAG
CACAGTGAGGAGGCTAATCTGGAGGAGCAGCAAGCCGAGTCCAGACCTAG
ACATGACCGTCTTGCTCAAATCAAGCAATATTGTGCCCATGCCTTTTCTA
TTCTTCAAGAGCTTCTTGCAATCCCCATCATGGAAGCCTTGGGCACCTTG
ACATTGACCCTTGTGGTCGGCCTTATCACCCGCCCCGCCGCCGCTACTGC
CCCACTAACCGCCGCGTTAGCCATTGCCGCCGTCTTACTGGCGATGATTC
ACGCTGGAGCCCGCATTTCAGGCGCGCATTACAACCCAGCAGTAACATTT
GCTTTGGTCCTGCTGGGCTGCACATCTCCTTTCCAATTCTTGGTCTACGT
AGGGAGTCAACTCGCCGGGGCCATCGGCGGCGCCCACCTAGCAAAGGCTC
TCGCTTCTCCAGATCCACTTGCCGACCCGTTTTTGCAGGGGGGCATTAAT
GGAAAATTAGCGCTGGTAGAGATATCTTATACCTTTGCTTTGGTCTTCGT
GATCTTACACACGGTGCTCGCCCGCACTCAGCAGCCCAATAGTTTTTCAG
GAGCTGCCATCTGTGCCACGATCGCGGCGGCGGCTGCTGTCGGTGCTGTC
ATGAATCCCGCGATATCGACGGGTTTATATGTGGCGGGCATGAGTGAGGA
GCGCGCGGGGGGGAAAGGGGGGGAGGAGGGGCTGTGGATTCGCTGGTTGC
TGCCCATGGTGGGGGCCTTGGTAGCCACATGCCTGTTTTATTTGACAAAT
CCCATGGATGCCATGTTCCCGCCAGGCCAGGACGAGGCAGCCGCCGCCGC
TGCTGCAGCAGCAGCAGCAGCAATGTCGTCGCCTAGGATCGGAAGAAGTG
GCATGGCAGGAGGAGTCGGAGGGGGAGGTGGGCGGACACCCCTCCTCCGC
GATGGTTCCTCGTTCTCGTCGGTCATCTCTTCATACTCCCATGTGCTTTT
CAAAGTCTCGCGCGTCTTGTCCGTGTATCTGATGGAGTTTCAAGGCACCT
TCCTCATTACCCTCACCATTATCCTCTCGCTCACTGCTTCCTCCTCCCCT
TCCTCCCTCGCTCCCTCCCCCGCCGCCACTGCCGGCCTGCTCCTTACGGG
CCTCGTTTTCACCGGAGGGTACATCAGCGGTGCTCATCTTAATCCAGCCG
TGACCTTCGGCGTTTTCCTCTTCCGTCCTCGACGAAGTGACGTGCCCAAG
GTGTTAGCCTACGTGGCTGTCCAAGTGCTCGCCTCTGTTTTCGCAACAGG
AGCCACTCGCCTCGCCCTCGGCCATGCCGCTTGTCAAACCGCCCTCCCCT
TTCCGCAGGCTCCGCATAAGTGGCAACAAGCCCTGGGGGTCGAGACCGTG
TGTACAGCCCTCCTTGTCCTCGTTGTCCTCCTACTAGGTGCGGCGGGCGC
GCAGGGGCATCCGTACTATGGGCTGGCGATCGGTGCTGCTTTAACGAGTG
GGTTGTATGCTGCAGGGTCTATCTCGGGAGGAGGATTAAATCCTGCGGTG
GCCTCGGGATTGTACGCCCTGAATGCGACGAAGGGACAGGGCGAGGAGGC
GTGGATTTATTGGATTGGGCCTTTATGTGGATCTGTGGTGGGGGTTTTGT
TGGCGGGGTGCTTGGCGCCTCGGGGATGGGCGATGGGAAGAAGGAGGGCG
ATGGAGAGGAGGGAGGAGGAGGAGGTGAAAGAAGAGGAGGAAGAAGGAGA
CGAGGACGAAGGCAAGGAGGAATGGATGGAGAAGGGGGAGATAACTGTGA
CGGAGGAAGAGGAGGGAAAGAAGAAGGAGGAGGAAGTAGCTGCGACGTAG
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Synonyms
Publications