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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:38081..41685 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G00150.1 vs.
Match: EWM29982.1 (hypothetical protein Naga_100276g10 [Nannochloropsis gaditana]) HSP 1 Score: 269.6 bits (688), Expect = 2.000e-68 Identity = 143/214 (66.82%), Postives = 162/214 (75.70%), Query Frame = 0
Query: 14 STSPVLLLCLLLLSSPRVARAFGPLPPSFWHPISSSSGDPAATEVKHACTPSSPPP---TQDPRSVAALPVSRPSIVRDVLALDFDGVLCHSVDESSRAAFRSVKKLWPQLATYCT-VGGTRGNECPAWLGDSLRQLRPLVETGYENILLARYCMEKYLQGQGSTPDIDITELSGKWQTHLRSALLQRYGVTAQELVDLFGSVRDDWLAEDREG 224
S + V LCLL S+ ARAFGPLPPSFWHP SS DPAATE+K S PPP + + R A++P+ P V+D+LALDFDGVLC+SV+ESS+AAFRSVKK+WPQLATYC VGG NECP WL DSLR LRPLVETGYEN+LLAR CMEKYLQGQGSTPDI IT+L+GKWQTH+RSALL RYGVTAQELVD+ G REG
Sbjct: 16 SPTNVAFLCLLT-STLHHARAFGPLPPSFWHP---SSIDPAATEIK---PQSHPPPFRTSTESRPEASVPLPPPRTVKDILALDFDGVLCNSVEESSQAAFRSVKKMWPQLATYCAPVGGASANECPGWLSDSLRHLRPLVETGYENVLLARLCMEKYLQGQGSTPDIHITDLAGKWQTHMRSALLHRYGVTAQELVDVRGGWEGGKEGGGREG 222
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G00150.1 ID=NO03G00150.1|Name=NO03G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2409bp ACAGTATCGTCATGATAAGAAGACCAACAGCCACTACCGCCCCCCGCCCC TCGACCTCCCCTGTCCTCCTCTTATGTCTCCTCCTTTTATCTTCGCCTCG CGTCGCCCGGGCTTTCGGCCCGCTCCCTCCCTCCTTTTGGCACCCAATCT CTTCCTCTTCCGGTGATCCAGCGGCCACAGAGGTCAAGCATGCCTGCACT CCTTCGTCCCCTCCGCCCACCCAGGACCCCCGCTCCGTCGCTGCTCTTCC CGTCTCCCGTCCCTCCATAGTCAGGGACGTCTTGGCGCTGGACTTCGATG GGGTTTTATGTCATAGCGTAGATGAAAGCAGCCGGGCAGCTTTTCGGAGT GTGAAGAAATTGTGGCCACAGCTAGCGACGTATTGCACGGTCGGTGGGAC ACGAGGCAATGAATGCCCAGCGTGGTTGGGTGATAGTCTCCGGCAGCTCC GCCCGTTGGTAGAGACAGGCTACGAAAATATCCTCCTGGCCCGATACTGC ATGGAAAAGTACCTCCAGGGACAGGGCTCCACCCCCGACATCGACATTAC GGAGTTGTCGGGAAAATGGCAGACACACTTGCGGTCAGCCTTGCTGCAAA GATACGGGGTGACGGCACAGGAGCTCGTGGATCTCTTCGGGTCGGTGCGC GACGACTGGCTGGCCGAGGACCGGGAAGGATGGCTCAAGGCCCACTCCTT CTACGCAGGCACGGACCTGTCTATGGGATGTCCCAGGTTGGAGAGCTATG TCATCACCACCAAGCAGACGCGCTTCGTCGAGGCCTTACTGGGCGCTCGC GGCGTGGCCCTCCCTCGCGAGCGTATCTACGGGCTGGGCTCGGGGCCCAA GACAGACATTTTGGCGCGACTTTCCCGCATTAAGAGAGAGCGGGCCGCCC AGGATCCGGAGATGGATAGGGAGCCAACGGTGCATTTCATCGAGGACCGC CTGGAAGCTCTTGAAAAGGTCTGCGCTGATCCTCGTCTGCAGAACGTCCA GCTGTACCTGGCTGACTGGGGCTATACCACGCCCGAGGCCCGTCAACGCG CATTGCTCAATCCTCGGATCCGCGTCCTTCAACTGTCCGACTTCGCCTGC ATGTGCCACGCGCTCGGCGCAGAGACGGAGGAGGAAGGGGGAGAAAGCTG TTCATTCGCTTGCCTCCAGGCCACATGTTCCTCCTCCTCTTCTTGCAGTA GCAGCAGCAGCACCAGCAGCAGCACCAGGCCTTTGGTAGAGAAGATAGTG TTCCAGTCTACCCCTCCCCCTTCTCCCGTCTACACGGACCCATCGCGCAA AAAGGAGGGAGGGTGGGAGGGTGAGGGGGAGGGAGGAGCGAAGGAGATGA GCGTGGGGAGCCCGACGACGTTTACGGAGAGAGAGAGGGAAGAGGAGGAG ATACACGAAATCATGATGAGGATGACGGAGGAGGAGGAGAATCAGGAAGC GAGGGAAGGCGTGAGGGAGGGAGGGAGGGAGGATGAAGAGCTGGCGGAGG ATGAGGGCTGGATTTTTGGGGTGGGGTCGGGAGGAGGGGGAAGGGGGGGA GGGACCAGCACGAAACAACGTCAAGAGGAGGAAGCGGACGAGGAAGAGTG GTAGAAGGGAGGGAGGGGGGGAGGGAGGGAATGCGACTTGGGAAGCATCA ATAGCTTCGTTAGGATGGAAGGGAGAGATGACGGGATGACTTAAGGGAGA GGGGGAGTGAAGGGCCTGTTATTGTGAAAGATGCATGCATGCATCGATCC TCGGTTTGCTTTTGTACATAGATATCAAGTTGTTAGTGACTTCAAGTGTG TGTGTGCCTGTGCGTGTGCATGTGTGTGTGTGTGAGTGAGTGGGTATGAG TTTTAGTGCGGCGTTTTGTTTGTATCAGAGAAGGGAGGGCAAGATTTCCT CCCTTCTTTTTCGCTTCCCCAGTGCGGGTGGGTGAATTAATTGATGGAGA ATATATGGCATTTTAGTGGCCTAGGTATCAGACGGGACTGTGCGAGAATG CGGAAGGGACAGACGAAACTCCCCAAGAAAACAGAGAGGACCGAGAAGCC TCGGCGAGAGGGATAGAAAGATTTAATTTGTGAGTGGCAAGGCCGAGACA TTGACTCATCGAAGCCGCGTTGCTCCGCGCAAAGGGTATACAGATTAAAG AGAGAGTAGTAGGGGAAAACAAAAGACCGCGAAATCTGACAAACGCGAGA GTGCTGCTGTTGCTGCTTTCGCTGCTTCTTTCTTTTTGGTTGTTGTGTGA GCTTCCCAAGCTCAGGCCTACTTTCCTCCTTTTAAGAACAATTCGCTCCT TCTTCCCTGCCTATCCTCTCTATACCGGTAGGGCCCGAGGTAGGACGAGA GGACTGGATTGGACGAAACACAAGGGCAGCCTCCCCCTCCACCCTCCCCC TCCCTCCCT back to topprotein sequence of NO03G00150.1 >NO03G00150.1-protein ID=NO03G00150.1-protein|Name=NO03G00150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp MIRRPTATTAPRPSTSPVLLLCLLLLSSPRVARAFGPLPPSFWHPISSSS GDPAATEVKHACTPSSPPPTQDPRSVAALPVSRPSIVRDVLALDFDGVLC HSVDESSRAAFRSVKKLWPQLATYCTVGGTRGNECPAWLGDSLRQLRPLV ETGYENILLARYCMEKYLQGQGSTPDIDITELSGKWQTHLRSALLQRYGV TAQELVDLFGSVRDDWLAEDREGWLKAHSFYAGTDLSMGCPRLESYVITT KQTRFVEALLGARGVALPRERIYGLGSGPKTDILARLSRIKRERAAQDPE MDREPTVHFIEDRLEALEKVCADPRLQNVQLYLADWGYTTPEARQRALLN PRIRVLQLSDFACMCHALGAETEEEGGESCSFACLQATCSSSSSCSSSSS TSSSTRPLVEKIVFQSTPPPSPVYTDPSRKKEGGWEGEGEGGAKEMSVGS PTTFTEREREEEEIHEIMMRMTEEEENQEAREGVREGGREDEELAEDEGW IFGVGSGGGGRGGGTSTKQRQEEEADEEEW* back to topmRNA from alignment at chr3:38081..41685+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G00150.1 ID=NO03G00150.1|Name=NO03G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=3605bp|location=Sequence derived from alignment at chr3:38081..41685+ (Nannochloropsis oceanica) ACAGTATCGTCATGATAAGAAGACCAACAGCCACTACCGCCCCCCGCCCC
TCGACCTCCCCTGTCCTCCTCTTATGTCTCCTCCTTTTATCTTCGCCTCG
CGTCGCCCGGGCTTTCGGCCCGCTCCCTCCCTCCTTTTGGCACCCAATCT
CTTCCTCTTCCGGTGATCCAGCGGCCACAGAGGTCAAGCATGCCTGCACT
CCTTCGTCCCCTCCGCCCACCCAGGACCCCCGCTCCGTCGCTGCTCTTCC
CGTCTCCCGTCCCTCCATAGTCAGGGACGTCTTGGCGCTGGACTTCGATG
GGGTTTTATGTCATAGCGTAGATGAAAGCAGCCGGGCAGCTTTTCGGAGT
GTGAAGAAATTGTGGCCACAGCTAGCGACGTATTGCACGGTCGGTGGGAC
ACGAGGCAATGAATGCCCAGCGTGGTTGGGTGATAGGTGCGTTGACTCGA
CAGGAGGAGGGAATGCTTGAATCGGGGGGGGGGGGCTTTCGCTTGTATGT
GTGAGGGAGTAATGTCGGTTGCATTGTTTGTAGCTATCTTTACATTTCGT
CTTCACATCTCTCCTTTTCACCCGATTCTGTTACACGGCTGACATTCCCT
TTTCCCCTTCTTCCCTCCTTCTCGCCCCCCCCCTTTTATTTACAGTCTCC
GGCAGCTCCGCCCGTTGGTAGAGACAGGCTACGAAAATATCCTCCTGGCC
CGATACTGCATGGAAAAGGTAGGCGTTGAGGTTAAGGGGAAAAGAAACGC
GATCAGCTGCATTTCCCTCCACTGATTTTGATCACCGCCTCCCTACATCC
TTCCCTTCAGTACCTCCAGGGACAGGGCTCCACCCCCGACATCGACATTA
CGGAGTTGTCGGGAAAATGGCAGACACACTTGCGGTCAGCCTTGCTGCAA
AGATACGGGGTGACGGCACAGGAGCTCGTGGATGTAAGCATGGAAGGAGG
GAAGGACGGACGGGAAGAGAGAAGAAGGGAAAGGAGGGAAGGAGGGAAGG
AGGGAAGGAGGGTTGGGGGTCGGGTGTGGGGGGGAAGTAGCAAGAGCACA
TGATTTAAGTTTTATTTAAAATGTATATATTCATATCTATATATCTATAT
CTATCTGTATGTATGATTGCGCACACTAATCACCCTTTCCTCCTTCCCTA
CCTCCGTCCTCCCTCCCTCCCTTCCCTCCCTTCCTCCCTCCCTCAGCTCT
TCGGGTCGGTGCGCGACGACTGGCTGGCCGAGGACCGGGAAGGATGGCTC
AAGGCCCACTCCTTCTACGCAGGCACGGACCTGTCTATGGGATGTCCCAG
GTTGGAGAGCTATGTCATCACCACCAAGCAGACGCGCTTCGTCGAGGCCT
TACTGGGCGCTCGCGGTAGGGAGGGAGGGAATATTGCCTATATATATATA
TATATATATATATATATATATATATATAGGGAGGGAGGGAAGGAGGGAGA
ATATTGCGAGCATTTCAAGGTTCATGATGTATATTTTGGCATGTCTCGTC
TCTCTGAATCTTCCTCTCTCCATCTCTCCCTCCCTCCTTCCTTCCCCCCT
TTACTTCTCCAGGCGTGGCCCTCCCTCGCGAGCGTATCTACGGGCTGGGC
TCGGGGCCCAAGACAGACATTTTGGCGCGACTTTCCCGCATTAAGAGAGA
GCGGGCCGCCCAGGATCCGGAGATGGATAGGGAGCCAACGGTAAGGATGT
AGGGATGTAGGGATGTAGGGATGTAGGGAGGTAGGGAGGGATAAATGTTA
CCAACGTCCAACCTCCCCTTTTCTTACAGGTGCATTTCATCGAGGACCGC
CTGGAAGCTCTTGAAAAGGTCTGCGCTGATCCTCGTCTGCAGGTACGTCC
CACCTCCCCTCCTTCGTTCCCTCCCTCCCCCCTCCTTCCTTCCCTCCCTC
CCCCCACCTTCCTAAACCCCCAACCCCCTCCCTCCTTCCCTCCTTCCCTT
CCTGCAGAACGTCCAGCTGTACCTGGCTGACTGGGGCTATACCACGCCCG
AGGCCCGTCAACGCGCATTGCTCAATCCTCGGATCCGCGTCCTTCAACTG
TCCGACTTCGCCTGCATGTGCCACGCGCTCGGCGCAGAGACGGAGGAGGA
AGGGGGAGAAAGGTGCGAAGGAGGAAGGTGGTGTGTGTTTGCGTGTGCAT
GGGCGTGGGTGTATGTGTGGGTGTGGGCGTGTGTTGTCTTTGTGGTGGGC
GGTCGTGGCTTTCTTCCCACCAGCCTGAACAATGTTTCTCCGGGGTCTCT
TCCTTTCTTCCCCTCCCTGCTTCCCCCTCACACTTTTTTCCCCTCCCCCT
CTTCTTCCCCTCCCTGCTTCCCCTCCCTCCTTCCCTCCCGCAGCTGTTCA
TTCGCTTGCCTCCAGGCCACATGTTCCTCCTCCTCTTCTTGCAGTAGCAG
CAGCAGCACCAGCAGCAGCACCAGGCCTTTGGTAGAGAAGATAGTGTTCC
AGTCTACCCCTCCCCCTTCTCCCGTCTACACGGACCCATCGCGCAAAAAG
GAGGGAGGGTGGGAGGGTGAGGGGGAGGGAGGAGCGAAGGAGATGAGCGT
GGGGAGCCCGACGACGTTTACGGAGAGAGAGAGGGAAGAGGAGGAGATAC
ACGAAATCATGATGAGGATGACGGAGGAGGAGGAGAATCAGGAAGCGAGG
GAAGGCGTGAGGGAGGGAGGGAGGGAGGATGAAGAGCTGGCGGAGGATGA
GGGCTGGATTTTTGGGGTGGGGTCGGGAGGAGGGGGAAGGGGGGGAGGGA
CCAGCACGAAACAACGTCAAGAGGAGGAAGCGGACGAGGAAGAGTGGTAG
AAGGGAGGGAGGGGGGGAGGGAGGGAATGCGACTTGGGAAGCATCAATAG
CTTCGTTAGGATGGAAGGGAGAGATGACGGGATGACTTAAGGGAGAGGGG
GAGTGAAGGGCCTGTTATTGTGAAAGATGCATGCATGCATCGATCCTCGG
TTTGCTTTTGTACATAGATATCAAGTTGTTAGTGACTTCAAGTGTGTGTG
TGCCTGTGCGTGTGCATGTGTGTGTGTGTGAGTGAGTGGGTATGAGTTTT
AGTGCGGCGTTTTGTTTGTATCAGAGAAGGGAGGGCAAGATTTCCTCCCT
TCTTTTTCGCTTCCCCAGTGCGGGTGGGTGAATTAATTGATGGAGAATAT
ATGGCATTTTAGTGGCCTAGGTATCAGACGGGACTGTGCGAGAATGCGGA
AGGGACAGACGAAACTCCCCAAGAAAACAGAGAGGACCGAGAAGCCTCGG
CGAGAGGGATAGAAAGATTTAATTTGTGAGTGGCAAGGCCGAGACATTGA
CTCATCGAAGCCGCGTTGCTCCGCGCAAAGGGTATACAGATTAAAGAGAG
AGTAGTAGGGGAAAACAAAAGACCGCGAAATCTGACAAACGCGAGAGTGC
TGCTGTTGCTGCTTTCGCTGCTTCTTTCTTTTTGGTTGTTGTGTGAGCTT
CCCAAGCTCAGGCCTACTTTCCTCCTTTTAAGAACAATTCGCTCCTTCTT
CCCTGCCTATCCTCTCTATACCGGTAGGGCCCGAGGTAGGACGAGAGGAC
TGGATTGGACGAAACACAAGGGCAGCCTCCCCCTCCACCCTCCCCCTCCC
TCCCT back to topCoding sequence (CDS) from alignment at chr3:38081..41685+ >NO03G00150.1 ID=NO03G00150.1|Name=NO03G00150.1|organism=Nannochloropsis oceanica|type=CDS|length=1593bp|location=Sequence derived from alignment at chr3:38081..41685+ (Nannochloropsis oceanica) ATGATAAGAAGACCAACAGCCACTACCGCCCCCCGCCCCTCGACCTCCCC TGTCCTCCTCTTATGTCTCCTCCTTTTATCTTCGCCTCGCGTCGCCCGGG CTTTCGGCCCGCTCCCTCCCTCCTTTTGGCACCCAATCTCTTCCTCTTCC GGTGATCCAGCGGCCACAGAGGTCAAGCATGCCTGCACTCCTTCGTCCCC TCCGCCCACCCAGGACCCCCGCTCCGTCGCTGCTCTTCCCGTCTCCCGTC CCTCCATAGTCAGGGACGTCTTGGCGCTGGACTTCGATGGGGTTTTATGT CATAGCGTAGATGAAAGCAGCCGGGCAGCTTTTCGGAGTGTGAAGAAATT GTGGCCACAGCTAGCGACGTATTGCACGGTCGGTGGGACACGAGGCAATG AATGCCCAGCGTGGTTGGGTGATAGTCTCCGGCAGCTCCGCCCGTTGGTA GAGACAGGCTACGAAAATATCCTCCTGGCCCGATACTGCATGGAAAAGTA CCTCCAGGGACAGGGCTCCACCCCCGACATCGACATTACGGAGTTGTCGG GAAAATGGCAGACACACTTGCGGTCAGCCTTGCTGCAAAGATACGGGGTG ACGGCACAGGAGCTCGTGGATCTCTTCGGGTCGGTGCGCGACGACTGGCT GGCCGAGGACCGGGAAGGATGGCTCAAGGCCCACTCCTTCTACGCAGGCA CGGACCTGTCTATGGGATGTCCCAGGTTGGAGAGCTATGTCATCACCACC AAGCAGACGCGCTTCGTCGAGGCCTTACTGGGCGCTCGCGGCGTGGCCCT CCCTCGCGAGCGTATCTACGGGCTGGGCTCGGGGCCCAAGACAGACATTT TGGCGCGACTTTCCCGCATTAAGAGAGAGCGGGCCGCCCAGGATCCGGAG ATGGATAGGGAGCCAACGGTGCATTTCATCGAGGACCGCCTGGAAGCTCT TGAAAAGGTCTGCGCTGATCCTCGTCTGCAGAACGTCCAGCTGTACCTGG CTGACTGGGGCTATACCACGCCCGAGGCCCGTCAACGCGCATTGCTCAAT CCTCGGATCCGCGTCCTTCAACTGTCCGACTTCGCCTGCATGTGCCACGC GCTCGGCGCAGAGACGGAGGAGGAAGGGGGAGAAAGCTGTTCATTCGCTT GCCTCCAGGCCACATGTTCCTCCTCCTCTTCTTGCAGTAGCAGCAGCAGC ACCAGCAGCAGCACCAGGCCTTTGGTAGAGAAGATAGTGTTCCAGTCTAC CCCTCCCCCTTCTCCCGTCTACACGGACCCATCGCGCAAAAAGGAGGGAG GGTGGGAGGGTGAGGGGGAGGGAGGAGCGAAGGAGATGAGCGTGGGGAGC CCGACGACGTTTACGGAGAGAGAGAGGGAAGAGGAGGAGATACACGAAAT CATGATGAGGATGACGGAGGAGGAGGAGAATCAGGAAGCGAGGGAAGGCG TGAGGGAGGGAGGGAGGGAGGATGAAGAGCTGGCGGAGGATGAGGGCTGG ATTTTTGGGGTGGGGTCGGGAGGAGGGGGAAGGGGGGGAGGGACCAGCAC GAAACAACGTCAAGAGGAGGAAGCGGACGAGGAAGAGTGGTAG back to top
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