NO03G00150.1, NO03G00150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00150.1
Unique NameNO03G00150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2409
Alignment locationchr3:38081..41685 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:38081..41685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G00150.1 vs.
Match: EWM29982.1 (hypothetical protein Naga_100276g10 [Nannochloropsis gaditana])

HSP 1 Score: 269.6 bits (688), Expect = 2.000e-68
Identity = 143/214 (66.82%), Postives = 162/214 (75.70%), Query Frame = 0
Query:   14 STSPVLLLCLLLLSSPRVARAFGPLPPSFWHPISSSSGDPAATEVKHACTPSSPPP---TQDPRSVAALPVSRPSIVRDVLALDFDGVLCHSVDESSRAAFRSVKKLWPQLATYCT-VGGTRGNECPAWLGDSLRQLRPLVETGYENILLARYCMEKYLQGQGSTPDIDITELSGKWQTHLRSALLQRYGVTAQELVDLFGSVRDDWLAEDREG 224
            S + V  LCLL  S+   ARAFGPLPPSFWHP   SS DPAATE+K     S PPP   + + R  A++P+  P  V+D+LALDFDGVLC+SV+ESS+AAFRSVKK+WPQLATYC  VGG   NECP WL DSLR LRPLVETGYEN+LLAR CMEKYLQGQGSTPDI IT+L+GKWQTH+RSALL RYGVTAQELVD+ G          REG
Sbjct:   16 SPTNVAFLCLLT-STLHHARAFGPLPPSFWHP---SSIDPAATEIK---PQSHPPPFRTSTESRPEASVPLPPPRTVKDILALDFDGVLCNSVEESSQAAFRSVKKMWPQLATYCAPVGGASANECPGWLSDSLRHLRPLVETGYENVLLARLCMEKYLQGQGSTPDIHITDLAGKWQTHMRSALLHRYGVTAQELVDVRGGWEGGKEGGGREG 222          
The following BLAST results are available for this feature:
BLAST of NO03G00150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29982.12.000e-6866.82hypothetical protein Naga_100276g10 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00150NO03G00150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00150.1NO03G00150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00150.1.cds1NO03G00150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00150.1.cds2NO03G00150.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00150.1.cds3NO03G00150.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00150.1.cds4NO03G00150.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00150.1.cds5NO03G00150.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00150.1.cds6NO03G00150.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00150.1.cds7NO03G00150.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00150.1.cds8NO03G00150.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00150.1 ID=NO03G00150.1|Name=NO03G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2409bp
ACAGTATCGTCATGATAAGAAGACCAACAGCCACTACCGCCCCCCGCCCC
TCGACCTCCCCTGTCCTCCTCTTATGTCTCCTCCTTTTATCTTCGCCTCG
CGTCGCCCGGGCTTTCGGCCCGCTCCCTCCCTCCTTTTGGCACCCAATCT
CTTCCTCTTCCGGTGATCCAGCGGCCACAGAGGTCAAGCATGCCTGCACT
CCTTCGTCCCCTCCGCCCACCCAGGACCCCCGCTCCGTCGCTGCTCTTCC
CGTCTCCCGTCCCTCCATAGTCAGGGACGTCTTGGCGCTGGACTTCGATG
GGGTTTTATGTCATAGCGTAGATGAAAGCAGCCGGGCAGCTTTTCGGAGT
GTGAAGAAATTGTGGCCACAGCTAGCGACGTATTGCACGGTCGGTGGGAC
ACGAGGCAATGAATGCCCAGCGTGGTTGGGTGATAGTCTCCGGCAGCTCC
GCCCGTTGGTAGAGACAGGCTACGAAAATATCCTCCTGGCCCGATACTGC
ATGGAAAAGTACCTCCAGGGACAGGGCTCCACCCCCGACATCGACATTAC
GGAGTTGTCGGGAAAATGGCAGACACACTTGCGGTCAGCCTTGCTGCAAA
GATACGGGGTGACGGCACAGGAGCTCGTGGATCTCTTCGGGTCGGTGCGC
GACGACTGGCTGGCCGAGGACCGGGAAGGATGGCTCAAGGCCCACTCCTT
CTACGCAGGCACGGACCTGTCTATGGGATGTCCCAGGTTGGAGAGCTATG
TCATCACCACCAAGCAGACGCGCTTCGTCGAGGCCTTACTGGGCGCTCGC
GGCGTGGCCCTCCCTCGCGAGCGTATCTACGGGCTGGGCTCGGGGCCCAA
GACAGACATTTTGGCGCGACTTTCCCGCATTAAGAGAGAGCGGGCCGCCC
AGGATCCGGAGATGGATAGGGAGCCAACGGTGCATTTCATCGAGGACCGC
CTGGAAGCTCTTGAAAAGGTCTGCGCTGATCCTCGTCTGCAGAACGTCCA
GCTGTACCTGGCTGACTGGGGCTATACCACGCCCGAGGCCCGTCAACGCG
CATTGCTCAATCCTCGGATCCGCGTCCTTCAACTGTCCGACTTCGCCTGC
ATGTGCCACGCGCTCGGCGCAGAGACGGAGGAGGAAGGGGGAGAAAGCTG
TTCATTCGCTTGCCTCCAGGCCACATGTTCCTCCTCCTCTTCTTGCAGTA
GCAGCAGCAGCACCAGCAGCAGCACCAGGCCTTTGGTAGAGAAGATAGTG
TTCCAGTCTACCCCTCCCCCTTCTCCCGTCTACACGGACCCATCGCGCAA
AAAGGAGGGAGGGTGGGAGGGTGAGGGGGAGGGAGGAGCGAAGGAGATGA
GCGTGGGGAGCCCGACGACGTTTACGGAGAGAGAGAGGGAAGAGGAGGAG
ATACACGAAATCATGATGAGGATGACGGAGGAGGAGGAGAATCAGGAAGC
GAGGGAAGGCGTGAGGGAGGGAGGGAGGGAGGATGAAGAGCTGGCGGAGG
ATGAGGGCTGGATTTTTGGGGTGGGGTCGGGAGGAGGGGGAAGGGGGGGA
GGGACCAGCACGAAACAACGTCAAGAGGAGGAAGCGGACGAGGAAGAGTG
GTAGAAGGGAGGGAGGGGGGGAGGGAGGGAATGCGACTTGGGAAGCATCA
ATAGCTTCGTTAGGATGGAAGGGAGAGATGACGGGATGACTTAAGGGAGA
GGGGGAGTGAAGGGCCTGTTATTGTGAAAGATGCATGCATGCATCGATCC
TCGGTTTGCTTTTGTACATAGATATCAAGTTGTTAGTGACTTCAAGTGTG
TGTGTGCCTGTGCGTGTGCATGTGTGTGTGTGTGAGTGAGTGGGTATGAG
TTTTAGTGCGGCGTTTTGTTTGTATCAGAGAAGGGAGGGCAAGATTTCCT
CCCTTCTTTTTCGCTTCCCCAGTGCGGGTGGGTGAATTAATTGATGGAGA
ATATATGGCATTTTAGTGGCCTAGGTATCAGACGGGACTGTGCGAGAATG
CGGAAGGGACAGACGAAACTCCCCAAGAAAACAGAGAGGACCGAGAAGCC
TCGGCGAGAGGGATAGAAAGATTTAATTTGTGAGTGGCAAGGCCGAGACA
TTGACTCATCGAAGCCGCGTTGCTCCGCGCAAAGGGTATACAGATTAAAG
AGAGAGTAGTAGGGGAAAACAAAAGACCGCGAAATCTGACAAACGCGAGA
GTGCTGCTGTTGCTGCTTTCGCTGCTTCTTTCTTTTTGGTTGTTGTGTGA
GCTTCCCAAGCTCAGGCCTACTTTCCTCCTTTTAAGAACAATTCGCTCCT
TCTTCCCTGCCTATCCTCTCTATACCGGTAGGGCCCGAGGTAGGACGAGA
GGACTGGATTGGACGAAACACAAGGGCAGCCTCCCCCTCCACCCTCCCCC
TCCCTCCCT
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protein sequence of NO03G00150.1

>NO03G00150.1-protein ID=NO03G00150.1-protein|Name=NO03G00150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MIRRPTATTAPRPSTSPVLLLCLLLLSSPRVARAFGPLPPSFWHPISSSS
GDPAATEVKHACTPSSPPPTQDPRSVAALPVSRPSIVRDVLALDFDGVLC
HSVDESSRAAFRSVKKLWPQLATYCTVGGTRGNECPAWLGDSLRQLRPLV
ETGYENILLARYCMEKYLQGQGSTPDIDITELSGKWQTHLRSALLQRYGV
TAQELVDLFGSVRDDWLAEDREGWLKAHSFYAGTDLSMGCPRLESYVITT
KQTRFVEALLGARGVALPRERIYGLGSGPKTDILARLSRIKRERAAQDPE
MDREPTVHFIEDRLEALEKVCADPRLQNVQLYLADWGYTTPEARQRALLN
PRIRVLQLSDFACMCHALGAETEEEGGESCSFACLQATCSSSSSCSSSSS
TSSSTRPLVEKIVFQSTPPPSPVYTDPSRKKEGGWEGEGEGGAKEMSVGS
PTTFTEREREEEEIHEIMMRMTEEEENQEAREGVREGGREDEELAEDEGW
IFGVGSGGGGRGGGTSTKQRQEEEADEEEW*
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mRNA from alignment at chr3:38081..41685+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00150.1 ID=NO03G00150.1|Name=NO03G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=3605bp|location=Sequence derived from alignment at chr3:38081..41685+ (Nannochloropsis oceanica)
ACAGTATCGTCATGATAAGAAGACCAACAGCCACTACCGCCCCCCGCCCC TCGACCTCCCCTGTCCTCCTCTTATGTCTCCTCCTTTTATCTTCGCCTCG CGTCGCCCGGGCTTTCGGCCCGCTCCCTCCCTCCTTTTGGCACCCAATCT CTTCCTCTTCCGGTGATCCAGCGGCCACAGAGGTCAAGCATGCCTGCACT CCTTCGTCCCCTCCGCCCACCCAGGACCCCCGCTCCGTCGCTGCTCTTCC CGTCTCCCGTCCCTCCATAGTCAGGGACGTCTTGGCGCTGGACTTCGATG GGGTTTTATGTCATAGCGTAGATGAAAGCAGCCGGGCAGCTTTTCGGAGT GTGAAGAAATTGTGGCCACAGCTAGCGACGTATTGCACGGTCGGTGGGAC ACGAGGCAATGAATGCCCAGCGTGGTTGGGTGATAGGTGCGTTGACTCGA CAGGAGGAGGGAATGCTTGAATCGGGGGGGGGGGGCTTTCGCTTGTATGT GTGAGGGAGTAATGTCGGTTGCATTGTTTGTAGCTATCTTTACATTTCGT CTTCACATCTCTCCTTTTCACCCGATTCTGTTACACGGCTGACATTCCCT TTTCCCCTTCTTCCCTCCTTCTCGCCCCCCCCCTTTTATTTACAGTCTCC GGCAGCTCCGCCCGTTGGTAGAGACAGGCTACGAAAATATCCTCCTGGCC CGATACTGCATGGAAAAGGTAGGCGTTGAGGTTAAGGGGAAAAGAAACGC GATCAGCTGCATTTCCCTCCACTGATTTTGATCACCGCCTCCCTACATCC TTCCCTTCAGTACCTCCAGGGACAGGGCTCCACCCCCGACATCGACATTA CGGAGTTGTCGGGAAAATGGCAGACACACTTGCGGTCAGCCTTGCTGCAA AGATACGGGGTGACGGCACAGGAGCTCGTGGATGTAAGCATGGAAGGAGG GAAGGACGGACGGGAAGAGAGAAGAAGGGAAAGGAGGGAAGGAGGGAAGG AGGGAAGGAGGGTTGGGGGTCGGGTGTGGGGGGGAAGTAGCAAGAGCACA TGATTTAAGTTTTATTTAAAATGTATATATTCATATCTATATATCTATAT CTATCTGTATGTATGATTGCGCACACTAATCACCCTTTCCTCCTTCCCTA CCTCCGTCCTCCCTCCCTCCCTTCCCTCCCTTCCTCCCTCCCTCAGCTCT TCGGGTCGGTGCGCGACGACTGGCTGGCCGAGGACCGGGAAGGATGGCTC AAGGCCCACTCCTTCTACGCAGGCACGGACCTGTCTATGGGATGTCCCAG GTTGGAGAGCTATGTCATCACCACCAAGCAGACGCGCTTCGTCGAGGCCT TACTGGGCGCTCGCGGTAGGGAGGGAGGGAATATTGCCTATATATATATA TATATATATATATATATATATATATATAGGGAGGGAGGGAAGGAGGGAGA ATATTGCGAGCATTTCAAGGTTCATGATGTATATTTTGGCATGTCTCGTC TCTCTGAATCTTCCTCTCTCCATCTCTCCCTCCCTCCTTCCTTCCCCCCT TTACTTCTCCAGGCGTGGCCCTCCCTCGCGAGCGTATCTACGGGCTGGGC TCGGGGCCCAAGACAGACATTTTGGCGCGACTTTCCCGCATTAAGAGAGA GCGGGCCGCCCAGGATCCGGAGATGGATAGGGAGCCAACGGTAAGGATGT AGGGATGTAGGGATGTAGGGATGTAGGGAGGTAGGGAGGGATAAATGTTA CCAACGTCCAACCTCCCCTTTTCTTACAGGTGCATTTCATCGAGGACCGC CTGGAAGCTCTTGAAAAGGTCTGCGCTGATCCTCGTCTGCAGGTACGTCC CACCTCCCCTCCTTCGTTCCCTCCCTCCCCCCTCCTTCCTTCCCTCCCTC CCCCCACCTTCCTAAACCCCCAACCCCCTCCCTCCTTCCCTCCTTCCCTT CCTGCAGAACGTCCAGCTGTACCTGGCTGACTGGGGCTATACCACGCCCG AGGCCCGTCAACGCGCATTGCTCAATCCTCGGATCCGCGTCCTTCAACTG TCCGACTTCGCCTGCATGTGCCACGCGCTCGGCGCAGAGACGGAGGAGGA AGGGGGAGAAAGGTGCGAAGGAGGAAGGTGGTGTGTGTTTGCGTGTGCAT GGGCGTGGGTGTATGTGTGGGTGTGGGCGTGTGTTGTCTTTGTGGTGGGC GGTCGTGGCTTTCTTCCCACCAGCCTGAACAATGTTTCTCCGGGGTCTCT TCCTTTCTTCCCCTCCCTGCTTCCCCCTCACACTTTTTTCCCCTCCCCCT CTTCTTCCCCTCCCTGCTTCCCCTCCCTCCTTCCCTCCCGCAGCTGTTCA TTCGCTTGCCTCCAGGCCACATGTTCCTCCTCCTCTTCTTGCAGTAGCAG CAGCAGCACCAGCAGCAGCACCAGGCCTTTGGTAGAGAAGATAGTGTTCC AGTCTACCCCTCCCCCTTCTCCCGTCTACACGGACCCATCGCGCAAAAAG GAGGGAGGGTGGGAGGGTGAGGGGGAGGGAGGAGCGAAGGAGATGAGCGT GGGGAGCCCGACGACGTTTACGGAGAGAGAGAGGGAAGAGGAGGAGATAC ACGAAATCATGATGAGGATGACGGAGGAGGAGGAGAATCAGGAAGCGAGG GAAGGCGTGAGGGAGGGAGGGAGGGAGGATGAAGAGCTGGCGGAGGATGA GGGCTGGATTTTTGGGGTGGGGTCGGGAGGAGGGGGAAGGGGGGGAGGGA CCAGCACGAAACAACGTCAAGAGGAGGAAGCGGACGAGGAAGAGTGGTAG AAGGGAGGGAGGGGGGGAGGGAGGGAATGCGACTTGGGAAGCATCAATAG CTTCGTTAGGATGGAAGGGAGAGATGACGGGATGACTTAAGGGAGAGGGG GAGTGAAGGGCCTGTTATTGTGAAAGATGCATGCATGCATCGATCCTCGG TTTGCTTTTGTACATAGATATCAAGTTGTTAGTGACTTCAAGTGTGTGTG TGCCTGTGCGTGTGCATGTGTGTGTGTGTGAGTGAGTGGGTATGAGTTTT AGTGCGGCGTTTTGTTTGTATCAGAGAAGGGAGGGCAAGATTTCCTCCCT TCTTTTTCGCTTCCCCAGTGCGGGTGGGTGAATTAATTGATGGAGAATAT ATGGCATTTTAGTGGCCTAGGTATCAGACGGGACTGTGCGAGAATGCGGA AGGGACAGACGAAACTCCCCAAGAAAACAGAGAGGACCGAGAAGCCTCGG CGAGAGGGATAGAAAGATTTAATTTGTGAGTGGCAAGGCCGAGACATTGA CTCATCGAAGCCGCGTTGCTCCGCGCAAAGGGTATACAGATTAAAGAGAG AGTAGTAGGGGAAAACAAAAGACCGCGAAATCTGACAAACGCGAGAGTGC TGCTGTTGCTGCTTTCGCTGCTTCTTTCTTTTTGGTTGTTGTGTGAGCTT CCCAAGCTCAGGCCTACTTTCCTCCTTTTAAGAACAATTCGCTCCTTCTT CCCTGCCTATCCTCTCTATACCGGTAGGGCCCGAGGTAGGACGAGAGGAC TGGATTGGACGAAACACAAGGGCAGCCTCCCCCTCCACCCTCCCCCTCCC TCCCT
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Coding sequence (CDS) from alignment at chr3:38081..41685+

>NO03G00150.1 ID=NO03G00150.1|Name=NO03G00150.1|organism=Nannochloropsis oceanica|type=CDS|length=1593bp|location=Sequence derived from alignment at chr3:38081..41685+ (Nannochloropsis oceanica)
ATGATAAGAAGACCAACAGCCACTACCGCCCCCCGCCCCTCGACCTCCCC
TGTCCTCCTCTTATGTCTCCTCCTTTTATCTTCGCCTCGCGTCGCCCGGG
CTTTCGGCCCGCTCCCTCCCTCCTTTTGGCACCCAATCTCTTCCTCTTCC
GGTGATCCAGCGGCCACAGAGGTCAAGCATGCCTGCACTCCTTCGTCCCC
TCCGCCCACCCAGGACCCCCGCTCCGTCGCTGCTCTTCCCGTCTCCCGTC
CCTCCATAGTCAGGGACGTCTTGGCGCTGGACTTCGATGGGGTTTTATGT
CATAGCGTAGATGAAAGCAGCCGGGCAGCTTTTCGGAGTGTGAAGAAATT
GTGGCCACAGCTAGCGACGTATTGCACGGTCGGTGGGACACGAGGCAATG
AATGCCCAGCGTGGTTGGGTGATAGTCTCCGGCAGCTCCGCCCGTTGGTA
GAGACAGGCTACGAAAATATCCTCCTGGCCCGATACTGCATGGAAAAGTA
CCTCCAGGGACAGGGCTCCACCCCCGACATCGACATTACGGAGTTGTCGG
GAAAATGGCAGACACACTTGCGGTCAGCCTTGCTGCAAAGATACGGGGTG
ACGGCACAGGAGCTCGTGGATCTCTTCGGGTCGGTGCGCGACGACTGGCT
GGCCGAGGACCGGGAAGGATGGCTCAAGGCCCACTCCTTCTACGCAGGCA
CGGACCTGTCTATGGGATGTCCCAGGTTGGAGAGCTATGTCATCACCACC
AAGCAGACGCGCTTCGTCGAGGCCTTACTGGGCGCTCGCGGCGTGGCCCT
CCCTCGCGAGCGTATCTACGGGCTGGGCTCGGGGCCCAAGACAGACATTT
TGGCGCGACTTTCCCGCATTAAGAGAGAGCGGGCCGCCCAGGATCCGGAG
ATGGATAGGGAGCCAACGGTGCATTTCATCGAGGACCGCCTGGAAGCTCT
TGAAAAGGTCTGCGCTGATCCTCGTCTGCAGAACGTCCAGCTGTACCTGG
CTGACTGGGGCTATACCACGCCCGAGGCCCGTCAACGCGCATTGCTCAAT
CCTCGGATCCGCGTCCTTCAACTGTCCGACTTCGCCTGCATGTGCCACGC
GCTCGGCGCAGAGACGGAGGAGGAAGGGGGAGAAAGCTGTTCATTCGCTT
GCCTCCAGGCCACATGTTCCTCCTCCTCTTCTTGCAGTAGCAGCAGCAGC
ACCAGCAGCAGCACCAGGCCTTTGGTAGAGAAGATAGTGTTCCAGTCTAC
CCCTCCCCCTTCTCCCGTCTACACGGACCCATCGCGCAAAAAGGAGGGAG
GGTGGGAGGGTGAGGGGGAGGGAGGAGCGAAGGAGATGAGCGTGGGGAGC
CCGACGACGTTTACGGAGAGAGAGAGGGAAGAGGAGGAGATACACGAAAT
CATGATGAGGATGACGGAGGAGGAGGAGAATCAGGAAGCGAGGGAAGGCG
TGAGGGAGGGAGGGAGGGAGGATGAAGAGCTGGCGGAGGATGAGGGCTGG
ATTTTTGGGGTGGGGTCGGGAGGAGGGGGAAGGGGGGGAGGGACCAGCAC
GAAACAACGTCAAGAGGAGGAAGCGGACGAGGAAGAGTGGTAG
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Synonyms
Publications