NO03G00140.1, NO03G00140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00140.1
Unique NameNO03G00140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1176
Alignment locationchr3:36287..37462 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:36287..37462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00140.1 vs.
Match: XP_005853820.1 (hydrolase iia [Nannochloropsis gaditana CCMP526]; EKU22538.1 hydrolase iia [Nannochloropsis gaditana CCMP526]; EWM29991.1 sugar phosphatase of the had superfamily [Nannochloropsis gaditana])

HSP 1 Score: 464.9 bits (1195), Expect = 2.400e-127
Identity = 217/313 (69.33%), Postives = 267/313 (85.30%), Query Frame = 0 
Query:   81 GLRDIAHHYDVFLIDQWGVMHDGYNAYPQAVACMEQLLALGKHVILLSNSSKRKAGSLVRLVEMGFTPDKYLDVVTSGELTFLGLSPPRTSSPYTKIQGRRVLVFGSGDDDRDYVQSMGCRIASLEEADFLLARGPFIILESSDPSIPPLRFGPGRILHESAEFDALATKAVERGLPMIVSNPDIVRPGGDNDPMPGMIGQAYEKKGGRVIYVGKPYPLVYAHCRELMEEVVGKE--GGLSELKMCAIGDSMWNDIKGAVDQEIASILVTDGIHAQALGVEQGSGKTVREKALNRFWEGFSFKPTHTVPCFRW 392
            GLR+I   YDVFLIDQWGVMHDG+ AYP AV CM+ +LA GK+VILLSNSSKRKAGSL RL +MGF P+KYLDV+TSGELT+LGL PPR+ S Y  I+G  VLVFGSGD+DR+YV+S+GCR++ +E ADFLLARGPF IL+S DP+ PP  FGPGRILHESAEF+A+A KA+ RGLPMIVSNPDIVRPGGDNDPMPG++G+AYE+KGG+V+YVGKPYPLVY  CR   + +VG +  GG ++ ++CAIGDSMWND+KGAVD+  AS+LVTDGIHA++LGV QGSG+ V  ++L+ F EGF+++P+HT+PCFRW
Sbjct:   21 GLREIVDQYDVFLIDQWGVMHDGHAAYPGAVECMQSILAAGKYVILLSNSSKRKAGSLARLTDMGFQPEKYLDVITSGELTYLGLKPPRSPS-YANIRGTNVLVFGSGDEDREYVESLGCRVSPVEAADFLLARGPFTILDSPDPATPPQTFGPGRILHESAEFEAVAAKAIARGLPMIVSNPDIVRPGGDNDPMPGLLGRAYEQKGGQVMYVGKPYPLVYQECR---KRLVGLKPAGGKADWRICAIGDSMWNDVKGAVDEGWASVLVTDGIHAESLGVRQGSGEEVPGESLDFFLEGFAYRPSHTIPCFRW 329
The following BLAST results are available for this feature:
BLAST of NO03G00140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853820.12.400e-12769.33hydrolase iia [Nannochloropsis gaditana CCMP526]; ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00140NO03G00140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00140.1NO03G00140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00140.1.cds1NO03G00140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00140.1 ID=NO03G00140.1|Name=NO03G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1176bp
ATGCTCCCCTCCTCCTCCTTCTTTCGCCAGCATATTCGTCTCCGCGTTCG
TCCCAATCCCGTTACCGCCGCTGCCGGTGCTGTGTTTGCTGCCACGGCGC
TCGTGCTCGCCTCCTCTCCATCCTGCTACTGTCAGGCCTTCATCTCCCCA
TCGCCATCCCGCTGCTCCATTTTCAACGCCAGAAGATCTCTGCGCATGTT
TTCATCAAGCAATGACAATGATAGCGTCCACTCCGTTGCGGGGCTTCGGG
ATATTGCCCATCACTACGATGTCTTTCTCATCGATCAATGGGGGGTCATG
CACGACGGCTACAATGCATACCCACAAGCCGTCGCTTGCATGGAACAGCT
CCTTGCCCTCGGCAAGCATGTGATACTCCTCTCTAACTCCTCCAAACGCA
AGGCCGGCTCTCTCGTCCGACTGGTCGAGATGGGCTTCACCCCAGACAAG
TACCTTGACGTCGTCACCTCCGGTGAGCTCACTTTTCTCGGTCTCTCCCC
TCCACGCACCTCCTCTCCTTACACAAAGATCCAAGGGAGGCGCGTTCTCG
TCTTTGGATCTGGAGATGATGACCGCGACTATGTCCAGTCAATGGGTTGC
AGAATTGCCTCCTTGGAAGAAGCAGATTTCCTCCTAGCACGAGGCCCGTT
TATTATACTCGAGTCCTCTGATCCTTCCATCCCGCCACTCCGGTTTGGCC
CTGGCCGCATCTTGCACGAGAGCGCCGAATTCGACGCGTTAGCCACTAAG
GCAGTAGAAAGGGGACTGCCAATGATTGTGTCCAACCCTGATATTGTGAG
GCCCGGTGGGGACAATGACCCTATGCCCGGCATGATCGGGCAGGCTTATG
AGAAGAAGGGGGGAAGGGTCATCTACGTTGGCAAGCCCTACCCCTTGGTT
TATGCCCATTGCCGCGAGCTTATGGAGGAAGTGGTGGGAAAGGAGGGAGG
GTTGTCAGAGTTGAAGATGTGTGCGATCGGAGACTCAATGTGGAATGATA
TAAAGGGGGCAGTGGACCAGGAGATTGCTTCTATCCTCGTCACGGACGGG
ATCCACGCCCAGGCCTTGGGGGTCGAGCAGGGGTCAGGAAAAACTGTAAG
AGAGAAGGCACTGAACAGGTTTTGGGAAGGATTTTCGTTCAAGCCTACGC
ATACGGTGCCATGCTTTAGGTGGTGA
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protein sequence of NO03G00140.1

>NO03G00140.1-protein ID=NO03G00140.1-protein|Name=NO03G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MLPSSSFFRQHIRLRVRPNPVTAAAGAVFAATALVLASSPSCYCQAFISP
SPSRCSIFNARRSLRMFSSSNDNDSVHSVAGLRDIAHHYDVFLIDQWGVM
HDGYNAYPQAVACMEQLLALGKHVILLSNSSKRKAGSLVRLVEMGFTPDK
YLDVVTSGELTFLGLSPPRTSSPYTKIQGRRVLVFGSGDDDRDYVQSMGC
RIASLEEADFLLARGPFIILESSDPSIPPLRFGPGRILHESAEFDALATK
AVERGLPMIVSNPDIVRPGGDNDPMPGMIGQAYEKKGGRVIYVGKPYPLV
YAHCRELMEEVVGKEGGLSELKMCAIGDSMWNDIKGAVDQEIASILVTDG
IHAQALGVEQGSGKTVREKALNRFWEGFSFKPTHTVPCFRW*
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mRNA from alignment at chr3:36287..37462-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00140.1 ID=NO03G00140.1|Name=NO03G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1176bp|location=Sequence derived from alignment at chr3:36287..37462- (Nannochloropsis oceanica)
ATGCTCCCCTCCTCCTCCTTCTTTCGCCAGCATATTCGTCTCCGCGTTCG
TCCCAATCCCGTTACCGCCGCTGCCGGTGCTGTGTTTGCTGCCACGGCGC
TCGTGCTCGCCTCCTCTCCATCCTGCTACTGTCAGGCCTTCATCTCCCCA
TCGCCATCCCGCTGCTCCATTTTCAACGCCAGAAGATCTCTGCGCATGTT
TTCATCAAGCAATGACAATGATAGCGTCCACTCCGTTGCGGGGCTTCGGG
ATATTGCCCATCACTACGATGTCTTTCTCATCGATCAATGGGGGGTCATG
CACGACGGCTACAATGCATACCCACAAGCCGTCGCTTGCATGGAACAGCT
CCTTGCCCTCGGCAAGCATGTGATACTCCTCTCTAACTCCTCCAAACGCA
AGGCCGGCTCTCTCGTCCGACTGGTCGAGATGGGCTTCACCCCAGACAAG
TACCTTGACGTCGTCACCTCCGGTGAGCTCACTTTTCTCGGTCTCTCCCC
TCCACGCACCTCCTCTCCTTACACAAAGATCCAAGGGAGGCGCGTTCTCG
TCTTTGGATCTGGAGATGATGACCGCGACTATGTCCAGTCAATGGGTTGC
AGAATTGCCTCCTTGGAAGAAGCAGATTTCCTCCTAGCACGAGGCCCGTT
TATTATACTCGAGTCCTCTGATCCTTCCATCCCGCCACTCCGGTTTGGCC
CTGGCCGCATCTTGCACGAGAGCGCCGAATTCGACGCGTTAGCCACTAAG
GCAGTAGAAAGGGGACTGCCAATGATTGTGTCCAACCCTGATATTGTGAG
GCCCGGTGGGGACAATGACCCTATGCCCGGCATGATCGGGCAGGCTTATG
AGAAGAAGGGGGGAAGGGTCATCTACGTTGGCAAGCCCTACCCCTTGGTT
TATGCCCATTGCCGCGAGCTTATGGAGGAAGTGGTGGGAAAGGAGGGAGG
GTTGTCAGAGTTGAAGATGTGTGCGATCGGAGACTCAATGTGGAATGATA
TAAAGGGGGCAGTGGACCAGGAGATTGCTTCTATCCTCGTCACGGACGGG
ATCCACGCCCAGGCCTTGGGGGTCGAGCAGGGGTCAGGAAAAACTGTAAG
AGAGAAGGCACTGAACAGGTTTTGGGAAGGATTTTCGTTCAAGCCTACGC
ATACGGTGCCATGCTTTAGGTGGTGA
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Coding sequence (CDS) from alignment at chr3:36287..37462-

>NO03G00140.1 ID=NO03G00140.1|Name=NO03G00140.1|organism=Nannochloropsis oceanica|type=CDS|length=1176bp|location=Sequence derived from alignment at chr3:36287..37462- (Nannochloropsis oceanica)
ATGCTCCCCTCCTCCTCCTTCTTTCGCCAGCATATTCGTCTCCGCGTTCG
TCCCAATCCCGTTACCGCCGCTGCCGGTGCTGTGTTTGCTGCCACGGCGC
TCGTGCTCGCCTCCTCTCCATCCTGCTACTGTCAGGCCTTCATCTCCCCA
TCGCCATCCCGCTGCTCCATTTTCAACGCCAGAAGATCTCTGCGCATGTT
TTCATCAAGCAATGACAATGATAGCGTCCACTCCGTTGCGGGGCTTCGGG
ATATTGCCCATCACTACGATGTCTTTCTCATCGATCAATGGGGGGTCATG
CACGACGGCTACAATGCATACCCACAAGCCGTCGCTTGCATGGAACAGCT
CCTTGCCCTCGGCAAGCATGTGATACTCCTCTCTAACTCCTCCAAACGCA
AGGCCGGCTCTCTCGTCCGACTGGTCGAGATGGGCTTCACCCCAGACAAG
TACCTTGACGTCGTCACCTCCGGTGAGCTCACTTTTCTCGGTCTCTCCCC
TCCACGCACCTCCTCTCCTTACACAAAGATCCAAGGGAGGCGCGTTCTCG
TCTTTGGATCTGGAGATGATGACCGCGACTATGTCCAGTCAATGGGTTGC
AGAATTGCCTCCTTGGAAGAAGCAGATTTCCTCCTAGCACGAGGCCCGTT
TATTATACTCGAGTCCTCTGATCCTTCCATCCCGCCACTCCGGTTTGGCC
CTGGCCGCATCTTGCACGAGAGCGCCGAATTCGACGCGTTAGCCACTAAG
GCAGTAGAAAGGGGACTGCCAATGATTGTGTCCAACCCTGATATTGTGAG
GCCCGGTGGGGACAATGACCCTATGCCCGGCATGATCGGGCAGGCTTATG
AGAAGAAGGGGGGAAGGGTCATCTACGTTGGCAAGCCCTACCCCTTGGTT
TATGCCCATTGCCGCGAGCTTATGGAGGAAGTGGTGGGAAAGGAGGGAGG
GTTGTCAGAGTTGAAGATGTGTGCGATCGGAGACTCAATGTGGAATGATA
TAAAGGGGGCAGTGGACCAGGAGATTGCTTCTATCCTCGTCACGGACGGG
ATCCACGCCCAGGCCTTGGGGGTCGAGCAGGGGTCAGGAAAAACTGTAAG
AGAGAAGGCACTGAACAGGTTTTGGGAAGGATTTTCGTTCAAGCCTACGC
ATACGGTGCCATGCTTTAGGTGGTGA
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Synonyms
Publications