NO03G00110.1, NO03G00110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00110.1
Unique NameNO03G00110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length669
Alignment locationchr3:31497..32450 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:31497..32450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00110.1 vs.
Match: XP_005853822.1 (hypothetical protein NGA_0470400 [Nannochloropsis gaditana CCMP526]; EKU22540.1 hypothetical protein NGA_0470400 [Nannochloropsis gaditana CCMP526]; EWM29990.1 hypothetical protein Naga_100276g6 [Nannochloropsis gaditana])

HSP 1 Score: 299.3 bits (765), Expect = 1.000e-77
Identity = 141/203 (69.46%), Postives = 169/203 (83.25%), Query Frame = 0 
Query:   20 LPHLATALNA-VLIGDSILASSDTQGGLGAINKYLNEFSGQKLNNYAKIGSSLHDGRVKSIPQLYQDMRTQTAPAVPSTIVLNGGGNDVISVRDDCWAFNDKCQLQIDSAMEIAEDLMLRMHDDGVQHIIYLGFYYAFNMTQAVDYGTERVKRVCRDAAIDCFVADVRDLDVVVGPDGLHPDDAGYRHLADRIWETKQEYNIP 222
            +P L+T +++ VL+GDSI+A  D   G+GAINKYLN+FSGQKL+NYA IGSSLHDG VKS+PQ+Y DMR +TAPAVP+TIVLNGGGNDVI+VRDDCWAFNDKC+ QID AM+IAE L+L MHDDGV+H+IYLGFYYAFNMT+AVDYG E +KRVC  A IDC VAD R+L +  G DG+HP D GY+ L+ RIWE K+  NIP
Sbjct:   20 VPVLSTGMSSTVLVGDSIMAGRDGVWGIGAINKYLNQFSGQKLDNYALIGSSLHDGWVKSVPQVYGDMRKKTAPAVPTTIVLNGGGNDVITVRDDCWAFNDKCRKQIDEAMDIAEKLLLCMHDDGVEHVIYLGFYYAFNMTEAVDYGMEGIKRVCEGAPIDCHVADARNLSIPTGWDGIHPLDEGYKRLSTRIWEVKEANNIP 222
The following BLAST results are available for this feature:
BLAST of NO03G00110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853822.11.000e-7769.46hypothetical protein NGA_0470400 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00110NO03G00110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00110.1NO03G00110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00110.1.cds1NO03G00110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00110.1.cds2NO03G00110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00110.1.cds3NO03G00110.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00110.1 ID=NO03G00110.1|Name=NO03G00110.1|organism=Nannochloropsis oceanica|type=mRNA|length=669bp
ATGCCTGTGACGTCCTGGAAGGTTGCAGTTACAGCATATGCTGCCACAGT
ACTCCTTCTTCCCCATCTGGCCACCGCCTTGAATGCTGTGCTTATTGGAG
ATTCGATATTGGCGAGCAGCGATACCCAAGGGGGACTGGGGGCGATTAAT
AAGTACTTGAACGAGTTTTCCGGCCAGAAGCTCAATAATTACGCTAAGAT
CGGCTCGAGTTTGCACGATGGGCGGGTGAAGAGCATTCCTCAATTGTACC
AAGACATGCGAACCCAGACGGCGCCTGCCGTACCCTCGACCATTGTGCTG
AATGGAGGAGGCAACGACGTCATCTCTGTGCGAGATGACTGCTGGGCCTT
CAATGATAAGTGCCAGCTTCAGATTGATAGTGCCATGGAAATCGCGGAGG
ATTTAATGTTGCGAATGCATGACGACGGGGTGCAGCACATTATTTACCTG
GGCTTTTACTACGCTTTCAACATGACCCAGGCGGTAGACTATGGCACCGA
AAGGGTCAAACGGGTGTGCAGAGATGCGGCTATTGATTGTTTCGTAGCGG
ATGTGCGGGACCTTGACGTCGTCGTCGGGCCGGATGGCTTGCACCCAGAT
GACGCAGGTTATCGTCACTTAGCTGACCGTATTTGGGAGACAAAGCAGGA
GTACAACATACCGTTCTAG
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protein sequence of NO03G00110.1

>NO03G00110.1-protein ID=NO03G00110.1-protein|Name=NO03G00110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MPVTSWKVAVTAYAATVLLLPHLATALNAVLIGDSILASSDTQGGLGAIN
KYLNEFSGQKLNNYAKIGSSLHDGRVKSIPQLYQDMRTQTAPAVPSTIVL
NGGGNDVISVRDDCWAFNDKCQLQIDSAMEIAEDLMLRMHDDGVQHIIYL
GFYYAFNMTQAVDYGTERVKRVCRDAAIDCFVADVRDLDVVVGPDGLHPD
DAGYRHLADRIWETKQEYNIPF*
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mRNA from alignment at chr3:31497..32450+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00110.1 ID=NO03G00110.1|Name=NO03G00110.1|organism=Nannochloropsis oceanica|type=mRNA|length=954bp|location=Sequence derived from alignment at chr3:31497..32450+ (Nannochloropsis oceanica)
ATGCCTGTGACGTCCTGGAAGGTTGCAGTTACAGCATATGCTGCCACAGT
ACTCCTTCTTCCCCATCTGGCCACCGCCTTGAATGCTGTACGTACACTTT
GAATGGATGAGTGGGTTGACCGGGAGGAGGGTGAGGGTCTTTATTGAGAG
CGAGGATTGAAATCTAATGCTGATAATTTTATTCCGAAAGCCATTGCTTA
TACTTCGGTCTCACCGCGTGAATGAAAATCTGTTTGATTAATCCTTTTCC
CTCGCTCTATACCCTACTTCTCTTTCCCTGGAAAGGTGCTTATTGGAGAT
TCGATATTGGCGAGCAGCGATACCCAAGGGGGACTGGGGGCGATTAATAA
GTACTTGAACGAGTTTTCCGGCCAGAAGCTCAATAATTACGCTAAGATCG
GCTCGAGTTTGCACGATGGGCGGGTGAAGAGCATTCCTCAATTGTACCAA
GACATGCGAACCCAGACGGCGCCTGCCGTACCCTCGACCATTGTGCTGAA
TGGAGGAGGCAACGACGTCATCTCTGTGCGAGATGACTGCTGGGCCTTCA
ATGATAAGTGCCAGCTTCAGATTGATAGTGCCATGGAAATCGCGGAGGAT
TTAATGTTGCGAATGCATGACGACGGGGTGCAGCACATTATTTACCTGGG
CTTTTACTACGCTTTCAACATGACCCAGGCGGTAGACTATGGCACCGAAA
GGGTCAAACGGGTGTGCAGAGATGCGGCTATTGATTGTTTCGTAGCGGAT
GTGCGGGACCTTGACGTCGTCGTCGGGCCGGATGGCTTGCACCCAGGTAA
CTATATATGTGTCGTGCACCTCTTCTATCCGCGAAGGCCTACATCACTAC
TCTTCAACCTCACGAATCGCCTCACATCTCCAGATGACGCAGGTTATCGT
CACTTAGCTGACCGTATTTGGGAGACAAAGCAGGAGTACAACATACCGTT
CTAG
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Coding sequence (CDS) from alignment at chr3:31497..32450+

>NO03G00110.1 ID=NO03G00110.1|Name=NO03G00110.1|organism=Nannochloropsis oceanica|type=CDS|length=669bp|location=Sequence derived from alignment at chr3:31497..32450+ (Nannochloropsis oceanica)
ATGCCTGTGACGTCCTGGAAGGTTGCAGTTACAGCATATGCTGCCACAGT
ACTCCTTCTTCCCCATCTGGCCACCGCCTTGAATGCTGTGCTTATTGGAG
ATTCGATATTGGCGAGCAGCGATACCCAAGGGGGACTGGGGGCGATTAAT
AAGTACTTGAACGAGTTTTCCGGCCAGAAGCTCAATAATTACGCTAAGAT
CGGCTCGAGTTTGCACGATGGGCGGGTGAAGAGCATTCCTCAATTGTACC
AAGACATGCGAACCCAGACGGCGCCTGCCGTACCCTCGACCATTGTGCTG
AATGGAGGAGGCAACGACGTCATCTCTGTGCGAGATGACTGCTGGGCCTT
CAATGATAAGTGCCAGCTTCAGATTGATAGTGCCATGGAAATCGCGGAGG
ATTTAATGTTGCGAATGCATGACGACGGGGTGCAGCACATTATTTACCTG
GGCTTTTACTACGCTTTCAACATGACCCAGGCGGTAGACTATGGCACCGA
AAGGGTCAAACGGGTGTGCAGAGATGCGGCTATTGATTGTTTCGTAGCGG
ATGTGCGGGACCTTGACGTCGTCGTCGGGCCGGATGGCTTGCACCCAGAT
GACGCAGGTTATCGTCACTTAGCTGACCGTATTTGGGAGACAAAGCAGGA
GTACAACATACCGTTCTAG
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Synonyms
Publications