NO02G06200.1, NO02G06200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G06200.1
Unique NameNO02G06200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1929
Alignment locationchr2:1667196..1669469 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1667196..1669469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G06200.1 vs.
Match: EWM27842.1 (ankyrin unc44 [Nannochloropsis gaditana])

HSP 1 Score: 598.2 bits (1541), Expect = 3.000e-167
Identity = 379/687 (55.17%), Postives = 448/687 (65.21%), Query Frame = 0 
Query:    3 NPSPAREET--------SHGLPTTPRRGLHSNSLKLKGMLSDLLQQAKLECSSYRSGSRRDGHDEEEGVEEEDDD-DLGGVTEETIERLCTSEYADDVLRICQKINGSGGHYAGGAGGSGRSSFDMSSTPGMGKGTTLFSSCGGRDGRSRRSSTMTSSGGYSRSNRSSSLAKDSAKGDKDFSTEGATAIADRDRSSSNGVTKASLSDSSPSLVPSSPHSTPSSFSSSPVLEPFSAARMIQAIEEGDVDRVRLFLLQYHRLSKPTVAVNALTRRPTPNFFHLALINRQEEVALFLLRHEGPTSAMIEAKDAQGRTSLMLAVIHNLLDVVKAL-----------------------------PFSLLARTRQRRRSLTPIDLRAVSAHGHRATCYAAIHGHIDILDFLLTHMSGGDSKVNFVACVQSQSAPCGHALLHHAVLGNHYRMIKWLVQKGAGVNVLTKGGAYEDGNRKWTPLHCAIHAFLTLR------LERASQEGGGGGAGGGAGGRAAALFQSPLAPSMSCSSMLSPSALPARSPSLLASFSFSSPLSTTSPSTPTRTSTRAKEGGREE---REGKALKIIRWLVEEGKADMTLRDALGRTPLDLFLGSGLYQREVAGGCSSAENSPGRPGRGREGGREGGREATSMKKVGKYLTLMQKKQRAVDAAMEELFDGENWKVG 643
            NPSPAREE          +  P  PR      S +LK ML++L+ QAKLEC+S  S S+ D     EG+EEE+ D +LGG+TEETIERLC SEYA+DVLRICQK+NGS  +  GG     R S         G G+T+FS    R   S  + T+T+ GG     + S+   +     + F TE      DR RSSS GVTK+  SD S S   S+  S  SS    P  E FS +RM  AIEEG++DRV   L QY RL  P+   N+  RRP PNFFH AL  RQE VAL LL+HEG +S MI+AKD QGRTSLMLAVI+NLL VVKAL                                LL+RTRQRRRSLTP+DLRAVS  GHRATCYAA++GHIDIL+FLLTHMSGGDS  NFV C+QSQSAPCGHALLHHAV GNHYR IKWLVQKGA VNV TKG A+E+G++KWTPLHCAIHAFL  +       E A + G  GG   G G R   LF SP   +++ ++ LSP+    +SPSL ASFSFSSP S +S S+P RT ++ +E  REE   +E KALKIIRWL+EEGKADM ++D  GRTP D+F+GS LYQRE +G  +S E SPGRPGR     R+GGRE TSMK+VGKYL LMQKKQRAVDAAM ELFDGENW +G
Sbjct:    9 NPSPAREEEIPSFRLSQPNSSPKNPR-----TSQRLKCMLAELVLQAKLECNSNYSVSKEDN----EGIEEEEGDHNLGGLTEETIERLCKSEYANDVLRICQKMNGSSLNTNGG-----RESIGSPLENFKGTGSTIFSDIDDRQDLSNSTLTITTKGGSGLPMKRST--SERVSNIETFLTE------DRGRSSSEGVTKSFPSDPSSSRRSSTSSSCLSSLCPKP--EEFSVSRMTSAIEEGNIDRVIHLLGQYRRLPTPSTTNNSPDRRPIPNFFHYALTLRQEGVALSLLQHEGSSSPMIDAKDPQGRTSLMLAVIYNLLGVVKALMLPPSTLATASSSPSSSNLSSSSASAPRSSLCLLSRTRQRRRSLTPLDLRAVSIQGHRATCYAALNGHIDILEFLLTHMSGGDSSSNFVTCIQSQSAPCGHALLHHAVQGNHYRTIKWLVQKGANVNVPTKGSAFEEGHKKWTPLHCAIHAFLEAKKEAAIIREEAGRAGPLGGRDRGPGNRGGGLFSSPPFKTLTPTATLSPAGHLLQSPSLRASFSFSSPASPSSFSSPARTPSQRRENDREESEDKEKKALKIIRWLIEEGKADMIVKDVHGRTPYDIFIGSTLYQRENSGSYNSNEMSPGRPGR----RRDGGREITSMKRVGKYLVLMQKKQRAVDAAMGELFDGENWDIG 667
The following BLAST results are available for this feature:
BLAST of NO02G06200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27842.13.000e-16755.17ankyrin unc44 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G06200NO02G06200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G06200.1NO02G06200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G06200.1.cds1NO02G06200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G06200.1.cds2NO02G06200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G06200.1.cds3NO02G06200.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G06200.1 ID=NO02G06200.1|Name=NO02G06200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1929bp
ATGACCAACCCGTCTCCAGCACGGGAGGAGACCAGCCACGGCTTGCCCAC
TACACCCCGTCGAGGTCTGCACTCCAATTCCCTCAAATTGAAAGGGATGC
TATCGGACCTGCTCCAGCAAGCCAAATTAGAGTGCAGTAGTTATCGGAGT
GGGAGTAGGCGGGACGGACATGACGAGGAAGAGGGAGTGGAGGAAGAGGA
CGACGATGACCTGGGTGGGGTGACAGAAGAGACAATTGAGCGGCTGTGCA
CATCTGAGTACGCCGATGACGTTTTGAGAATTTGCCAAAAAATCAATGGC
AGTGGTGGACACTATGCTGGTGGTGCCGGTGGAAGTGGCAGGAGCAGCTT
CGACATGTCATCAACACCGGGCATGGGGAAGGGCACGACCCTCTTTTCTT
CGTGTGGTGGTAGAGACGGCCGCAGCAGGCGGAGCAGCACCATGACCTCC
AGCGGCGGCTACAGTAGAAGCAACAGAAGCAGCAGCCTAGCCAAGGACAG
TGCTAAGGGCGATAAAGACTTCAGCACGGAAGGTGCGACTGCCATAGCAG
ATAGGGACCGGAGCAGTAGCAACGGCGTCACCAAGGCCTCCCTCTCGGAT
TCCTCCCCCTCATTAGTCCCATCCTCCCCTCACTCTACTCCCTCCTCCTT
CTCCTCAAGCCCTGTCCTTGAGCCTTTTTCAGCCGCCCGCATGATCCAGG
CCATAGAAGAAGGCGACGTGGACCGGGTACGCCTCTTCCTATTGCAATAC
CATCGCCTCTCCAAGCCCACCGTGGCCGTCAATGCCCTTACCCGCCGTCC
AACCCCCAACTTCTTCCACTTGGCTCTCATAAATCGGCAGGAGGAAGTGG
CTCTTTTCCTCCTACGGCATGAGGGGCCCACCTCCGCCATGATAGAAGCG
AAGGACGCCCAAGGCAGGACGAGCCTGATGCTCGCCGTCATTCACAATCT
CCTCGACGTCGTCAAGGCCCTCCCTTTCTCCCTCCTCGCCCGCACGCGAC
AACGCCGCCGCTCCCTCACCCCTATCGACCTCCGGGCTGTCTCCGCCCAT
GGGCACCGGGCCACGTGCTACGCGGCCATCCACGGCCACATCGATATCCT
GGACTTCCTCCTCACGCATATGAGCGGCGGTGACAGTAAGGTCAACTTTG
TCGCATGCGTGCAGTCCCAGTCGGCCCCCTGTGGGCATGCCTTGCTACAT
CATGCAGTGCTTGGTAATCACTACCGAATGATCAAGTGGCTGGTGCAAAA
GGGGGCGGGCGTCAACGTGCTGACGAAGGGGGGAGCCTACGAGGACGGCA
ATCGCAAATGGACTCCCCTCCACTGTGCCATCCACGCGTTTCTGACCCTC
AGGCTCGAGCGCGCGAGCCAGGAAGGAGGAGGAGGAGGGGCCGGAGGCGG
GGCTGGGGGGCGGGCGGCCGCGTTATTCCAATCCCCGCTTGCCCCTTCCA
TGTCTTGCAGCTCGATGCTGTCGCCCTCTGCCCTTCCGGCGCGCTCTCCC
TCCCTCCTTGCTTCCTTCTCCTTCTCCTCCCCTCTCTCCACCACCTCCCC
CTCCACCCCGACCCGCACGTCCACTCGCGCAAAAGAAGGTGGGAGGGAGG
AGCGGGAGGGGAAAGCCCTCAAGATCATTCGGTGGCTAGTGGAGGAAGGG
AAGGCGGACATGACGCTTCGTGACGCCCTTGGTCGAACCCCGCTGGACCT
CTTTTTGGGCAGCGGGCTCTACCAGCGGGAGGTCGCTGGTGGGTGCAGCA
GCGCCGAGAACAGCCCGGGACGGCCGGGGCGAGGGCGGGAGGGAGGGCGG
GAGGGAGGGAGGGAGGCGACGTCGATGAAGAAAGTAGGGAAGTACCTGAC
CCTGATGCAGAAGAAGCAGCGAGCCGTGGACGCTGCTATGGAGGAGCTCT
TCGACGGGGAAAACTGGAAAGTGGGCTAG
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protein sequence of NO02G06200.1

>NO02G06200.1-protein ID=NO02G06200.1-protein|Name=NO02G06200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=643bp
MTNPSPAREETSHGLPTTPRRGLHSNSLKLKGMLSDLLQQAKLECSSYRS
GSRRDGHDEEEGVEEEDDDDLGGVTEETIERLCTSEYADDVLRICQKING
SGGHYAGGAGGSGRSSFDMSSTPGMGKGTTLFSSCGGRDGRSRRSSTMTS
SGGYSRSNRSSSLAKDSAKGDKDFSTEGATAIADRDRSSSNGVTKASLSD
SSPSLVPSSPHSTPSSFSSSPVLEPFSAARMIQAIEEGDVDRVRLFLLQY
HRLSKPTVAVNALTRRPTPNFFHLALINRQEEVALFLLRHEGPTSAMIEA
KDAQGRTSLMLAVIHNLLDVVKALPFSLLARTRQRRRSLTPIDLRAVSAH
GHRATCYAAIHGHIDILDFLLTHMSGGDSKVNFVACVQSQSAPCGHALLH
HAVLGNHYRMIKWLVQKGAGVNVLTKGGAYEDGNRKWTPLHCAIHAFLTL
RLERASQEGGGGGAGGGAGGRAAALFQSPLAPSMSCSSMLSPSALPARSP
SLLASFSFSSPLSTTSPSTPTRTSTRAKEGGREEREGKALKIIRWLVEEG
KADMTLRDALGRTPLDLFLGSGLYQREVAGGCSSAENSPGRPGRGREGGR
EGGREATSMKKVGKYLTLMQKKQRAVDAAMEELFDGENWKVG*
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mRNA from alignment at chr2:1667196..1669469+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G06200.1 ID=NO02G06200.1|Name=NO02G06200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2274bp|location=Sequence derived from alignment at chr2:1667196..1669469+ (Nannochloropsis oceanica)
ATGACCAACCCGTCTCCAGCACGGGAGGAGACCAGCCACGGCTTGCCCAC
TACACCCCGTCGAGGTCTGCACTCCAATTCCCTCAAATTGAAAGGGATGC
TATCGGACCTGCTCCAGCAAGCCAAATTAGAGTGCAGTAGTTATCGGAGT
GGGAGTAGGCGGGACGGACATGACGAGGAAGAGGGAGTGGAGGAAGAGGA
CGACGATGACCTGGGTGGGGTGACAGAAGAGACAATTGAGCGGCTGTGCA
CATCTGAGTACGCCGATGACGTTTTGAGAATTTGCCAAAAAATCAATGGC
AGTGGTGGACACTATGCTGGTGGTGCCGGTGGAAGTGGCAGGAGCAGCTT
CGACATGTCATCAACACCGGGCATGGGGAAGGGCACGACCCTCTTTTCTT
CGTGTGGTGGTAGAGACGGCCGCAGCAGGCGGAGCAGCACCATGACCTCC
AGCGGCGGCTACAGTAGAAGCAACAGAAGCAGCAGCCTAGCCAAGGACAG
TGCTAAGGGCGATAAAGACTTCAGCACGGAAGGTGCGACTGCCATAGCAG
ATAGGGACCGGAGCAGTAGCAACGGCGTCACCAAGGCCTCCCTCTCGGAT
TCCTCCCCCTCATTAGTCCCATCCTCCCCTCACTCTACTCCCTCCTCCTT
CTCCTCAAGCCCTGTCCTTGAGCCTTTTTCAGCCGCCCGCATGATCCAGG
CCATAGAAGAAGGCGACGTGGACCGGGTACGCCTCTTCCTATTGCAATAC
CATCGCCTCTCCAAGCCCACCGTGGCCGTCAATGCCCTTACCCGCCGTCC
AACCCCCAACTTCTTCCACTTGGCTCTCATAAATCGGCAGGAGGAAGTGG
CTCTTTTCCTCCTACGGCATGAGGGGCCCACCTCCGCCATGATAGAAGCG
AAGGACGCCCAAGGCAGGACGAGCCTGATGCTCGCCGTCATTCACAATCT
CCTCGACGTCGTCAAGGCCCTCGTCCTTCCACCGTCCTCTCTCCCGTCCC
CCCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTTCACCCCCTCCCCTTCAT
TCTCTCTCTCCTCCAAGCCTTTCTCCCTCCTCGCCCGCACGCGACAACGC
CGCCGCTCCCTCACCCCTATCGACCTCCGGGCTGTCTCCGCCCATGGGCA
CCGGGCCACGTGCTACGCGGCCATCCACGGCCACATCGATATCCTGGACT
TCCTCCTCACGCATATGAGCGGCGGTGACAGTAAGGTCAACTTTGTCGCA
TGCGTGCAGTCCCAGTCGGCCCCCTGTGGGCATGCCTTGCTACATCATGC
AGTGCTTGGTAAGTGTCCTCTCTTCTTTCCTCCCTCCCTCCCACATTCCC
CCCCCTTTTCACTCTCTCCGTTATCGAACTCTTGCGCGAGTCAGTCGGGG
ATTACGTTTTCACACTCTTGGTGTCATTCTTTCCTCCCCTTCCCTCCCTC
CCTCTCCCTGCGGAATCGGAACAAGATCGTCGAATGACTCACCGAAAAGA
GAGCAAGTGCCATCCACACTCACCCTCCCCCCGTCCCTTCATCCCTCCCG
TCCTTCAGGTAATCACTACCGAATGATCAAGTGGCTGGTGCAAAAGGGGG
CGGGCGTCAACGTGCTGACGAAGGGGGGAGCCTACGAGGACGGCAATCGC
AAATGGACTCCCCTCCACTGTGCCATCCACGCGTTTCTGACCCTCAGGCT
CGAGCGCGCGAGCCAGGAAGGAGGAGGAGGAGGGGCCGGAGGCGGGGCTG
GGGGGCGGGCGGCCGCGTTATTCCAATCCCCGCTTGCCCCTTCCATGTCT
TGCAGCTCGATGCTGTCGCCCTCTGCCCTTCCGGCGCGCTCTCCCTCCCT
CCTTGCTTCCTTCTCCTTCTCCTCCCCTCTCTCCACCACCTCCCCCTCCA
CCCCGACCCGCACGTCCACTCGCGCAAAAGAAGGTGGGAGGGAGGAGCGG
GAGGGGAAAGCCCTCAAGATCATTCGGTGGCTAGTGGAGGAAGGGAAGGC
GGACATGACGCTTCGTGACGCCCTTGGTCGAACCCCGCTGGACCTCTTTT
TGGGCAGCGGGCTCTACCAGCGGGAGGTCGCTGGTGGGTGCAGCAGCGCC
GAGAACAGCCCGGGACGGCCGGGGCGAGGGCGGGAGGGAGGGCGGGAGGG
AGGGAGGGAGGCGACGTCGATGAAGAAAGTAGGGAAGTACCTGACCCTGA
TGCAGAAGAAGCAGCGAGCCGTGGACGCTGCTATGGAGGAGCTCTTCGAC
GGGGAAAACTGGAAAGTGGGCTAG
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Coding sequence (CDS) from alignment at chr2:1667196..1669469+

>NO02G06200.1 ID=NO02G06200.1|Name=NO02G06200.1|organism=Nannochloropsis oceanica|type=CDS|length=1929bp|location=Sequence derived from alignment at chr2:1667196..1669469+ (Nannochloropsis oceanica)
ATGACCAACCCGTCTCCAGCACGGGAGGAGACCAGCCACGGCTTGCCCAC
TACACCCCGTCGAGGTCTGCACTCCAATTCCCTCAAATTGAAAGGGATGC
TATCGGACCTGCTCCAGCAAGCCAAATTAGAGTGCAGTAGTTATCGGAGT
GGGAGTAGGCGGGACGGACATGACGAGGAAGAGGGAGTGGAGGAAGAGGA
CGACGATGACCTGGGTGGGGTGACAGAAGAGACAATTGAGCGGCTGTGCA
CATCTGAGTACGCCGATGACGTTTTGAGAATTTGCCAAAAAATCAATGGC
AGTGGTGGACACTATGCTGGTGGTGCCGGTGGAAGTGGCAGGAGCAGCTT
CGACATGTCATCAACACCGGGCATGGGGAAGGGCACGACCCTCTTTTCTT
CGTGTGGTGGTAGAGACGGCCGCAGCAGGCGGAGCAGCACCATGACCTCC
AGCGGCGGCTACAGTAGAAGCAACAGAAGCAGCAGCCTAGCCAAGGACAG
TGCTAAGGGCGATAAAGACTTCAGCACGGAAGGTGCGACTGCCATAGCAG
ATAGGGACCGGAGCAGTAGCAACGGCGTCACCAAGGCCTCCCTCTCGGAT
TCCTCCCCCTCATTAGTCCCATCCTCCCCTCACTCTACTCCCTCCTCCTT
CTCCTCAAGCCCTGTCCTTGAGCCTTTTTCAGCCGCCCGCATGATCCAGG
CCATAGAAGAAGGCGACGTGGACCGGGTACGCCTCTTCCTATTGCAATAC
CATCGCCTCTCCAAGCCCACCGTGGCCGTCAATGCCCTTACCCGCCGTCC
AACCCCCAACTTCTTCCACTTGGCTCTCATAAATCGGCAGGAGGAAGTGG
CTCTTTTCCTCCTACGGCATGAGGGGCCCACCTCCGCCATGATAGAAGCG
AAGGACGCCCAAGGCAGGACGAGCCTGATGCTCGCCGTCATTCACAATCT
CCTCGACGTCGTCAAGGCCCTCCCTTTCTCCCTCCTCGCCCGCACGCGAC
AACGCCGCCGCTCCCTCACCCCTATCGACCTCCGGGCTGTCTCCGCCCAT
GGGCACCGGGCCACGTGCTACGCGGCCATCCACGGCCACATCGATATCCT
GGACTTCCTCCTCACGCATATGAGCGGCGGTGACAGTAAGGTCAACTTTG
TCGCATGCGTGCAGTCCCAGTCGGCCCCCTGTGGGCATGCCTTGCTACAT
CATGCAGTGCTTGGTAATCACTACCGAATGATCAAGTGGCTGGTGCAAAA
GGGGGCGGGCGTCAACGTGCTGACGAAGGGGGGAGCCTACGAGGACGGCA
ATCGCAAATGGACTCCCCTCCACTGTGCCATCCACGCGTTTCTGACCCTC
AGGCTCGAGCGCGCGAGCCAGGAAGGAGGAGGAGGAGGGGCCGGAGGCGG
GGCTGGGGGGCGGGCGGCCGCGTTATTCCAATCCCCGCTTGCCCCTTCCA
TGTCTTGCAGCTCGATGCTGTCGCCCTCTGCCCTTCCGGCGCGCTCTCCC
TCCCTCCTTGCTTCCTTCTCCTTCTCCTCCCCTCTCTCCACCACCTCCCC
CTCCACCCCGACCCGCACGTCCACTCGCGCAAAAGAAGGTGGGAGGGAGG
AGCGGGAGGGGAAAGCCCTCAAGATCATTCGGTGGCTAGTGGAGGAAGGG
AAGGCGGACATGACGCTTCGTGACGCCCTTGGTCGAACCCCGCTGGACCT
CTTTTTGGGCAGCGGGCTCTACCAGCGGGAGGTCGCTGGTGGGTGCAGCA
GCGCCGAGAACAGCCCGGGACGGCCGGGGCGAGGGCGGGAGGGAGGGCGG
GAGGGAGGGAGGGAGGCGACGTCGATGAAGAAAGTAGGGAAGTACCTGAC
CCTGATGCAGAAGAAGCAGCGAGCCGTGGACGCTGCTATGGAGGAGCTCT
TCGACGGGGAAAACTGGAAAGTGGGCTAG
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Synonyms
Publications