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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:1644650..1646517 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G06140.1 vs.
Match: EWM30084.1 (hypothetical protein Naga_100758g2 [Nannochloropsis gaditana]) HSP 1 Score: 97.1 bits (240), Expect = 1.700e-16 Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0
Query: 11 RTTACASPAIMKERRQKGWWRNGRWSDQELRYLDVLKQDFEDG 54
RTTACASPAIMKERRQKGWWRNGRWSDQELRYLDVLKQDFEDG
Sbjct: 333 RTTACASPAIMKERRQKGWWRNGRWSDQELRYLDVLKQDFEDG 375
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G06140.1 ID=NO02G06140.1|Name=NO02G06140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1470bp ATGCCCGGCCCCGACAGCCAGAACGGGCACCGGACGACGGCGTGTGCGAG TCCGGCGATCATGAAGGAGAGGCGGCAGAAGGGGTGGTGGAGAAATGGCA GGTGGTCAGACCAGGAGCTGCGGTACTTGGACGTCTTGAAGCAGGATTTC GAGGACGGCGTGCTGGATAATGGCCTCGAGGAGGGCACCACCTTCCGGCT CTACGCGAGCGATATTCTCCAGTGCGACCCCATGCGTGTTTCGAAGCGCT TTTCGCACGACCAGAAGATCGGCCTGCTCAAGTATACCCCCCGGGAAGAC CTCCACACACCCGCCTACCTCTCCTCCCGCACTCGCCGCCGCGACGAGGT GGCCTCCATCTTTTGGGCCCAAGTCGACCGGAAGAACCGCGGTGACGTCT CGTACATAACCTCCTCCTCCGGCGTGCCAACCTCCTATCCTGCCTCCTCC TACCCCCATCACCCCCCGCACCACGGTCCTCCGTCCAGCGGCCTGCCACA CCCAGGGCCCGTCGTCCTCCCTCATGCCGGTGTGCCCATGTCCCTCAACG GCCCTCCCACCCTGCCTCGCCCGCCCCCTCCCACGCACGGCCTGCCGTCG CATTCCTACCTCTATCCCCCGCCCCCATTGGCCAGCCTGTCTTCCTCCTC CCCTTCCTCCCCTTCCTCGGCCCCTGGCTCCTCCGTCGCAGGAGGGGCCG GGCCGCCTTCGCCAGCCTCTGCAGCAGCAGCAGCAACGGCAGCAGCAGCA GGAGGAGGAGGAAGAGGAGGCACCAGTGCTCGGTATGGTGGAGGCGCAAG GGAGGGAGGGAGGGAAGGCGGGACGGAGGGAAAGGGAAGCAGCGAACATA CCAGTGCCCTTCCCAAGAAGAAGCGGCCGCTGGCCCAGCCACAGCCCCAG ACTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAACCTC GACCTCGACCTCGACCTCGACTTTGACCTTGACTGCCGGGACGACAACGA GTGTGACAGGGAAGGAGGAGGGGGAGGGAGGGAAGGAGGAAGGGAAGGAG GGGTGGAGGAATGAGGCAGAGAGGGAGAGTGCCATGACGATGATTTTATT GACAGGACTTAAAAACTCGCCTTCACAGGCGCCCAAGACGCTGGACCAGC TGCAGCCTGTGGAGGGGGAGCAACAGGGGGGGGGGAGGGGGAAGGGGGGA AGGAGGGAGGGGAAAGAGAGGGAAAGAAGTTCAGCGCAGGAGGGGAGAGA GGAAGGGAGAGAGGGGGAGGAGGAAGAGTCCTCGTTGCCCCTGCTGAAGA AGTCTCGGCCTCTGTCGTCTTCAGCGGCTCCGCCTGTGACGGCCAGTGCG GCTGGTGGTGGGGAAGGAGGAGAAGGAGGGAGGGGCGGGAGGACAGGAGG AAGATCGTTGTCGTCCTCCTCCCTCTCGTCCTCTTCCTCCTCGGCGTCCT CACGTACGGGGACACTCTAA back to topprotein sequence of NO02G06140.1 >NO02G06140.1-protein ID=NO02G06140.1-protein|Name=NO02G06140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp MPGPDSQNGHRTTACASPAIMKERRQKGWWRNGRWSDQELRYLDVLKQDF EDGVLDNGLEEGTTFRLYASDILQCDPMRVSKRFSHDQKIGLLKYTPRED LHTPAYLSSRTRRRDEVASIFWAQVDRKNRGDVSYITSSSGVPTSYPASS YPHHPPHHGPPSSGLPHPGPVVLPHAGVPMSLNGPPTLPRPPPPTHGLPS HSYLYPPPPLASLSSSSPSSPSSAPGSSVAGGAGPPSPASAAAAATAAAA GGGGRGGTSARYGGGAREGGREGGTEGKGSSEHTSALPKKKRPLAQPQPQ TPSLPPSLPPSLPPSTSTSTSTSTLTLTAGTTTSVTGKEEGEGGKEEGKE GWRNEAERESAMTMILLTGLKNSPSQAPKTLDQLQPVEGEQQGGGRGKGG RREGKERERSSAQEGREEGREGEEEESSLPLLKKSRPLSSSAAPPVTASA AGGGEGGEGGRGGRTGGRSLSSSSLSSSSSSASSRTGTL* back to topmRNA from alignment at chr2:1644650..1646517- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G06140.1 ID=NO02G06140.1|Name=NO02G06140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1868bp|location=Sequence derived from alignment at chr2:1644650..1646517- (Nannochloropsis oceanica) ATGCCCGGCCCCGACAGCCAGAACGGGCACCGGACGACGGCGTGTGCGAG
TCCGGCGATCATGAAGGAGAGGCGGCAGAAGGGGTGGTGGAGAAATGGCA
GGTGGTCAGACCAGGAGCTGCGGTACTTGGACGTCTTGAAGCAGGATTTC
GAGGACGGTAGGTATCCATCGCTTGTGTGGAGGTTGGAATGCCTTCTCCT
TTCCTCCCCTCCCCCTCTCTCCCCCCCTCTCTTTTCCTGTTTTCTGACCT
CGTCTGTTTGTCGACCGACCCGAAGGCGTCTCCTGCCCTCGGGTTTATCC
CCAGTCTTGTCCCACTAGCCCTCTGTTTCTTTCCTCCCACTCTTTCCTTC
TCCCTCCTTCCCCTTAACCCATACGCGCGCTTGAAGTCACGCACCCACTT
CCTCCCTTCTTCCACCTCCTCTAGGCGTGCTGGATAATGGCCTCGAGGAG
GGCACCACCTTCCGGCTCTACGCGAGCGATATTCTCCAGTGCGACCCCAT
GCGTGTTTCGAAGCGCTTTTCGCACGACCAGAAGATCGGCCTGCTCAAGT
ATACCCCCCGGGAAGACCTCCACACACCCGCCTACCTCTCCTCCCGCACT
CGCCGCCGCGACGAGGTGGCCTCCATCTTTTGGGCCCAAGTCGACCGGAA
GAACCGCGGTGACGTCTCGTACATAACCTCCTCCTCCGGCGTGCCAACCT
CCTATCCTGCCTCCTCCTACCCCCATCACCCCCCGCACCACGGTCCTCCG
TCCAGCGGCCTGCCACACCCAGGGCCCGTCGTCCTCCCTCATGCCGGTGT
GCCCATGTCCCTCAACGGCCCTCCCACCCTGCCTCGCCCGCCCCCTCCCA
CGCACGGCCTGCCGTCGCATTCCTACCTCTATCCCCCGCCCCCATTGGCC
AGCCTGTCTTCCTCCTCCCCTTCCTCCCCTTCCTCGGCCCCTGGCTCCTC
CGTCGCAGGAGGGGCCGGGCCGCCTTCGCCAGCCTCTGCAGCAGCAGCAG
CAACGGCAGCAGCAGCAGGAGGAGGAGGAAGAGGAGGCACCAGTGCTCGG
TATGGTGGAGGCGCAAGGGAGGGAGGGAGGGAAGGCGGGACGGAGGGAAA
GGGAAGCAGCGAACATACCAGTGCCCTTCCCAAGAAGAAGCGGCCGCTGG
CCCAGCCACAGCCCCAGACTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCAACCTCGACCTCGACCTCGACCTCGACTTTGACCTTGAC
TGCCGGGACGACAACGAGTGTGACAGGGAAGGAGGAGGGGGAGGGAGGGA
AGGAGGAAGGGAAGGAGGGGTGGAGGAATGAGGCAGAGAGGGAGAGTGCC
ATGACGATGATTTTATTGACAGGACTTAAAAACTCGCCTTCACAGGCGCC
CAAGACGCTGGACCAGCTGCAGCCTGTGGAGGGGGAGCAACAGGGGGGGG
GGAGGGGGAAGGGGGGAAGGAGGGAGGGGAAAGAGAGGGAAAGAAGGTAG
TGACAATGTCGCAGGCGAAGGAGAGTAAGGAGGAGGAGCAGGAGGAGGAG
GAGCCAAAGGGGGAAAGGGAGGTGCAGGGAAGGAGGAAGGGAAAGAAGAG
GAAAAGCAATAAAAGAGGGGACGACAGTTCAGCGCAGGAGGGGAGAGAGG
AAGGGAGAGAGGGGGAGGAGGAAGAGTCCTCGTTGCCCCTGCTGAAGAAG
TCTCGGCCTCTGTCGTCTTCAGCGGCTCCGCCTGTGACGGCCAGTGCGGC
TGGTGGTGGGGAAGGAGGAGAAGGAGGGAGGGGCGGGAGGACAGGAGGAA
GATCGTTGTCGTCCTCCTCCCTCTCGTCCTCTTCCTCCTCGGCGTCCTCA
CGTACGGGGACACTCTAA back to topCoding sequence (CDS) from alignment at chr2:1644650..1646517- >NO02G06140.1 ID=NO02G06140.1|Name=NO02G06140.1|organism=Nannochloropsis oceanica|type=CDS|length=1470bp|location=Sequence derived from alignment at chr2:1644650..1646517- (Nannochloropsis oceanica) ATGCCCGGCCCCGACAGCCAGAACGGGCACCGGACGACGGCGTGTGCGAG TCCGGCGATCATGAAGGAGAGGCGGCAGAAGGGGTGGTGGAGAAATGGCA GGTGGTCAGACCAGGAGCTGCGGTACTTGGACGTCTTGAAGCAGGATTTC GAGGACGGCGTGCTGGATAATGGCCTCGAGGAGGGCACCACCTTCCGGCT CTACGCGAGCGATATTCTCCAGTGCGACCCCATGCGTGTTTCGAAGCGCT TTTCGCACGACCAGAAGATCGGCCTGCTCAAGTATACCCCCCGGGAAGAC CTCCACACACCCGCCTACCTCTCCTCCCGCACTCGCCGCCGCGACGAGGT GGCCTCCATCTTTTGGGCCCAAGTCGACCGGAAGAACCGCGGTGACGTCT CGTACATAACCTCCTCCTCCGGCGTGCCAACCTCCTATCCTGCCTCCTCC TACCCCCATCACCCCCCGCACCACGGTCCTCCGTCCAGCGGCCTGCCACA CCCAGGGCCCGTCGTCCTCCCTCATGCCGGTGTGCCCATGTCCCTCAACG GCCCTCCCACCCTGCCTCGCCCGCCCCCTCCCACGCACGGCCTGCCGTCG CATTCCTACCTCTATCCCCCGCCCCCATTGGCCAGCCTGTCTTCCTCCTC CCCTTCCTCCCCTTCCTCGGCCCCTGGCTCCTCCGTCGCAGGAGGGGCCG GGCCGCCTTCGCCAGCCTCTGCAGCAGCAGCAGCAACGGCAGCAGCAGCA GGAGGAGGAGGAAGAGGAGGCACCAGTGCTCGGTATGGTGGAGGCGCAAG GGAGGGAGGGAGGGAAGGCGGGACGGAGGGAAAGGGAAGCAGCGAACATA CCAGTGCCCTTCCCAAGAAGAAGCGGCCGCTGGCCCAGCCACAGCCCCAG ACTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAACCTC GACCTCGACCTCGACCTCGACTTTGACCTTGACTGCCGGGACGACAACGA GTGTGACAGGGAAGGAGGAGGGGGAGGGAGGGAAGGAGGAAGGGAAGGAG GGGTGGAGGAATGAGGCAGAGAGGGAGAGTGCCATGACGATGATTTTATT GACAGGACTTAAAAACTCGCCTTCACAGGCGCCCAAGACGCTGGACCAGC TGCAGCCTGTGGAGGGGGAGCAACAGGGGGGGGGGAGGGGGAAGGGGGGA AGGAGGGAGGGGAAAGAGAGGGAAAGAAGTTCAGCGCAGGAGGGGAGAGA GGAAGGGAGAGAGGGGGAGGAGGAAGAGTCCTCGTTGCCCCTGCTGAAGA AGTCTCGGCCTCTGTCGTCTTCAGCGGCTCCGCCTGTGACGGCCAGTGCG GCTGGTGGTGGGGAAGGAGGAGAAGGAGGGAGGGGCGGGAGGACAGGAGG AAGATCGTTGTCGTCCTCCTCCCTCTCGTCCTCTTCCTCCTCGGCGTCCT CACGTACGGGGACACTCTAA back to top
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