NO02G06140.1, NO02G06140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G06140.1
Unique NameNO02G06140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1470
Alignment locationchr2:1644650..1646517 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1644650..1646517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G06140.1 vs.
Match: EWM30084.1 (hypothetical protein Naga_100758g2 [Nannochloropsis gaditana])

HSP 1 Score: 97.1 bits (240), Expect = 1.700e-16
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0
Query:   11 RTTACASPAIMKERRQKGWWRNGRWSDQELRYLDVLKQDFEDG 54
            RTTACASPAIMKERRQKGWWRNGRWSDQELRYLDVLKQDFEDG
Sbjct:  333 RTTACASPAIMKERRQKGWWRNGRWSDQELRYLDVLKQDFEDG 375          
The following BLAST results are available for this feature:
BLAST of NO02G06140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30084.11.700e-16100.00hypothetical protein Naga_100758g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G06140NO02G06140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G06140.1NO02G06140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G06140.1.cds1NO02G06140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G06140.1.cds2NO02G06140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G06140.1.cds3NO02G06140.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G06140.1 ID=NO02G06140.1|Name=NO02G06140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1470bp
ATGCCCGGCCCCGACAGCCAGAACGGGCACCGGACGACGGCGTGTGCGAG
TCCGGCGATCATGAAGGAGAGGCGGCAGAAGGGGTGGTGGAGAAATGGCA
GGTGGTCAGACCAGGAGCTGCGGTACTTGGACGTCTTGAAGCAGGATTTC
GAGGACGGCGTGCTGGATAATGGCCTCGAGGAGGGCACCACCTTCCGGCT
CTACGCGAGCGATATTCTCCAGTGCGACCCCATGCGTGTTTCGAAGCGCT
TTTCGCACGACCAGAAGATCGGCCTGCTCAAGTATACCCCCCGGGAAGAC
CTCCACACACCCGCCTACCTCTCCTCCCGCACTCGCCGCCGCGACGAGGT
GGCCTCCATCTTTTGGGCCCAAGTCGACCGGAAGAACCGCGGTGACGTCT
CGTACATAACCTCCTCCTCCGGCGTGCCAACCTCCTATCCTGCCTCCTCC
TACCCCCATCACCCCCCGCACCACGGTCCTCCGTCCAGCGGCCTGCCACA
CCCAGGGCCCGTCGTCCTCCCTCATGCCGGTGTGCCCATGTCCCTCAACG
GCCCTCCCACCCTGCCTCGCCCGCCCCCTCCCACGCACGGCCTGCCGTCG
CATTCCTACCTCTATCCCCCGCCCCCATTGGCCAGCCTGTCTTCCTCCTC
CCCTTCCTCCCCTTCCTCGGCCCCTGGCTCCTCCGTCGCAGGAGGGGCCG
GGCCGCCTTCGCCAGCCTCTGCAGCAGCAGCAGCAACGGCAGCAGCAGCA
GGAGGAGGAGGAAGAGGAGGCACCAGTGCTCGGTATGGTGGAGGCGCAAG
GGAGGGAGGGAGGGAAGGCGGGACGGAGGGAAAGGGAAGCAGCGAACATA
CCAGTGCCCTTCCCAAGAAGAAGCGGCCGCTGGCCCAGCCACAGCCCCAG
ACTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAACCTC
GACCTCGACCTCGACCTCGACTTTGACCTTGACTGCCGGGACGACAACGA
GTGTGACAGGGAAGGAGGAGGGGGAGGGAGGGAAGGAGGAAGGGAAGGAG
GGGTGGAGGAATGAGGCAGAGAGGGAGAGTGCCATGACGATGATTTTATT
GACAGGACTTAAAAACTCGCCTTCACAGGCGCCCAAGACGCTGGACCAGC
TGCAGCCTGTGGAGGGGGAGCAACAGGGGGGGGGGAGGGGGAAGGGGGGA
AGGAGGGAGGGGAAAGAGAGGGAAAGAAGTTCAGCGCAGGAGGGGAGAGA
GGAAGGGAGAGAGGGGGAGGAGGAAGAGTCCTCGTTGCCCCTGCTGAAGA
AGTCTCGGCCTCTGTCGTCTTCAGCGGCTCCGCCTGTGACGGCCAGTGCG
GCTGGTGGTGGGGAAGGAGGAGAAGGAGGGAGGGGCGGGAGGACAGGAGG
AAGATCGTTGTCGTCCTCCTCCCTCTCGTCCTCTTCCTCCTCGGCGTCCT
CACGTACGGGGACACTCTAA
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protein sequence of NO02G06140.1

>NO02G06140.1-protein ID=NO02G06140.1-protein|Name=NO02G06140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp
MPGPDSQNGHRTTACASPAIMKERRQKGWWRNGRWSDQELRYLDVLKQDF
EDGVLDNGLEEGTTFRLYASDILQCDPMRVSKRFSHDQKIGLLKYTPRED
LHTPAYLSSRTRRRDEVASIFWAQVDRKNRGDVSYITSSSGVPTSYPASS
YPHHPPHHGPPSSGLPHPGPVVLPHAGVPMSLNGPPTLPRPPPPTHGLPS
HSYLYPPPPLASLSSSSPSSPSSAPGSSVAGGAGPPSPASAAAAATAAAA
GGGGRGGTSARYGGGAREGGREGGTEGKGSSEHTSALPKKKRPLAQPQPQ
TPSLPPSLPPSLPPSTSTSTSTSTLTLTAGTTTSVTGKEEGEGGKEEGKE
GWRNEAERESAMTMILLTGLKNSPSQAPKTLDQLQPVEGEQQGGGRGKGG
RREGKERERSSAQEGREEGREGEEEESSLPLLKKSRPLSSSAAPPVTASA
AGGGEGGEGGRGGRTGGRSLSSSSLSSSSSSASSRTGTL*
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mRNA from alignment at chr2:1644650..1646517-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G06140.1 ID=NO02G06140.1|Name=NO02G06140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1868bp|location=Sequence derived from alignment at chr2:1644650..1646517- (Nannochloropsis oceanica)
ATGCCCGGCCCCGACAGCCAGAACGGGCACCGGACGACGGCGTGTGCGAG TCCGGCGATCATGAAGGAGAGGCGGCAGAAGGGGTGGTGGAGAAATGGCA GGTGGTCAGACCAGGAGCTGCGGTACTTGGACGTCTTGAAGCAGGATTTC GAGGACGGTAGGTATCCATCGCTTGTGTGGAGGTTGGAATGCCTTCTCCT TTCCTCCCCTCCCCCTCTCTCCCCCCCTCTCTTTTCCTGTTTTCTGACCT CGTCTGTTTGTCGACCGACCCGAAGGCGTCTCCTGCCCTCGGGTTTATCC CCAGTCTTGTCCCACTAGCCCTCTGTTTCTTTCCTCCCACTCTTTCCTTC TCCCTCCTTCCCCTTAACCCATACGCGCGCTTGAAGTCACGCACCCACTT CCTCCCTTCTTCCACCTCCTCTAGGCGTGCTGGATAATGGCCTCGAGGAG GGCACCACCTTCCGGCTCTACGCGAGCGATATTCTCCAGTGCGACCCCAT GCGTGTTTCGAAGCGCTTTTCGCACGACCAGAAGATCGGCCTGCTCAAGT ATACCCCCCGGGAAGACCTCCACACACCCGCCTACCTCTCCTCCCGCACT CGCCGCCGCGACGAGGTGGCCTCCATCTTTTGGGCCCAAGTCGACCGGAA GAACCGCGGTGACGTCTCGTACATAACCTCCTCCTCCGGCGTGCCAACCT CCTATCCTGCCTCCTCCTACCCCCATCACCCCCCGCACCACGGTCCTCCG TCCAGCGGCCTGCCACACCCAGGGCCCGTCGTCCTCCCTCATGCCGGTGT GCCCATGTCCCTCAACGGCCCTCCCACCCTGCCTCGCCCGCCCCCTCCCA CGCACGGCCTGCCGTCGCATTCCTACCTCTATCCCCCGCCCCCATTGGCC AGCCTGTCTTCCTCCTCCCCTTCCTCCCCTTCCTCGGCCCCTGGCTCCTC CGTCGCAGGAGGGGCCGGGCCGCCTTCGCCAGCCTCTGCAGCAGCAGCAG CAACGGCAGCAGCAGCAGGAGGAGGAGGAAGAGGAGGCACCAGTGCTCGG TATGGTGGAGGCGCAAGGGAGGGAGGGAGGGAAGGCGGGACGGAGGGAAA GGGAAGCAGCGAACATACCAGTGCCCTTCCCAAGAAGAAGCGGCCGCTGG CCCAGCCACAGCCCCAGACTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC CTCCCTCCCTCAACCTCGACCTCGACCTCGACCTCGACTTTGACCTTGAC TGCCGGGACGACAACGAGTGTGACAGGGAAGGAGGAGGGGGAGGGAGGGA AGGAGGAAGGGAAGGAGGGGTGGAGGAATGAGGCAGAGAGGGAGAGTGCC ATGACGATGATTTTATTGACAGGACTTAAAAACTCGCCTTCACAGGCGCC CAAGACGCTGGACCAGCTGCAGCCTGTGGAGGGGGAGCAACAGGGGGGGG GGAGGGGGAAGGGGGGAAGGAGGGAGGGGAAAGAGAGGGAAAGAAGGTAG TGACAATGTCGCAGGCGAAGGAGAGTAAGGAGGAGGAGCAGGAGGAGGAG GAGCCAAAGGGGGAAAGGGAGGTGCAGGGAAGGAGGAAGGGAAAGAAGAG GAAAAGCAATAAAAGAGGGGACGACAGTTCAGCGCAGGAGGGGAGAGAGG AAGGGAGAGAGGGGGAGGAGGAAGAGTCCTCGTTGCCCCTGCTGAAGAAG TCTCGGCCTCTGTCGTCTTCAGCGGCTCCGCCTGTGACGGCCAGTGCGGC TGGTGGTGGGGAAGGAGGAGAAGGAGGGAGGGGCGGGAGGACAGGAGGAA GATCGTTGTCGTCCTCCTCCCTCTCGTCCTCTTCCTCCTCGGCGTCCTCA CGTACGGGGACACTCTAA
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Coding sequence (CDS) from alignment at chr2:1644650..1646517-

>NO02G06140.1 ID=NO02G06140.1|Name=NO02G06140.1|organism=Nannochloropsis oceanica|type=CDS|length=1470bp|location=Sequence derived from alignment at chr2:1644650..1646517- (Nannochloropsis oceanica)
ATGCCCGGCCCCGACAGCCAGAACGGGCACCGGACGACGGCGTGTGCGAG
TCCGGCGATCATGAAGGAGAGGCGGCAGAAGGGGTGGTGGAGAAATGGCA
GGTGGTCAGACCAGGAGCTGCGGTACTTGGACGTCTTGAAGCAGGATTTC
GAGGACGGCGTGCTGGATAATGGCCTCGAGGAGGGCACCACCTTCCGGCT
CTACGCGAGCGATATTCTCCAGTGCGACCCCATGCGTGTTTCGAAGCGCT
TTTCGCACGACCAGAAGATCGGCCTGCTCAAGTATACCCCCCGGGAAGAC
CTCCACACACCCGCCTACCTCTCCTCCCGCACTCGCCGCCGCGACGAGGT
GGCCTCCATCTTTTGGGCCCAAGTCGACCGGAAGAACCGCGGTGACGTCT
CGTACATAACCTCCTCCTCCGGCGTGCCAACCTCCTATCCTGCCTCCTCC
TACCCCCATCACCCCCCGCACCACGGTCCTCCGTCCAGCGGCCTGCCACA
CCCAGGGCCCGTCGTCCTCCCTCATGCCGGTGTGCCCATGTCCCTCAACG
GCCCTCCCACCCTGCCTCGCCCGCCCCCTCCCACGCACGGCCTGCCGTCG
CATTCCTACCTCTATCCCCCGCCCCCATTGGCCAGCCTGTCTTCCTCCTC
CCCTTCCTCCCCTTCCTCGGCCCCTGGCTCCTCCGTCGCAGGAGGGGCCG
GGCCGCCTTCGCCAGCCTCTGCAGCAGCAGCAGCAACGGCAGCAGCAGCA
GGAGGAGGAGGAAGAGGAGGCACCAGTGCTCGGTATGGTGGAGGCGCAAG
GGAGGGAGGGAGGGAAGGCGGGACGGAGGGAAAGGGAAGCAGCGAACATA
CCAGTGCCCTTCCCAAGAAGAAGCGGCCGCTGGCCCAGCCACAGCCCCAG
ACTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAACCTC
GACCTCGACCTCGACCTCGACTTTGACCTTGACTGCCGGGACGACAACGA
GTGTGACAGGGAAGGAGGAGGGGGAGGGAGGGAAGGAGGAAGGGAAGGAG
GGGTGGAGGAATGAGGCAGAGAGGGAGAGTGCCATGACGATGATTTTATT
GACAGGACTTAAAAACTCGCCTTCACAGGCGCCCAAGACGCTGGACCAGC
TGCAGCCTGTGGAGGGGGAGCAACAGGGGGGGGGGAGGGGGAAGGGGGGA
AGGAGGGAGGGGAAAGAGAGGGAAAGAAGTTCAGCGCAGGAGGGGAGAGA
GGAAGGGAGAGAGGGGGAGGAGGAAGAGTCCTCGTTGCCCCTGCTGAAGA
AGTCTCGGCCTCTGTCGTCTTCAGCGGCTCCGCCTGTGACGGCCAGTGCG
GCTGGTGGTGGGGAAGGAGGAGAAGGAGGGAGGGGCGGGAGGACAGGAGG
AAGATCGTTGTCGTCCTCCTCCCTCTCGTCCTCTTCCTCCTCGGCGTCCT
CACGTACGGGGACACTCTAA
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Synonyms
Publications