|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:1624150..1625562 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G06070.1 vs.
Match: XP_005854926.1 (methyltransferase like 8, partial [Nannochloropsis gaditana CCMP526]; EKU21434.1 methyltransferase like 8, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 397.1 bits (1019), Expect = 7.500e-107 Identity = 222/363 (61.16%), Postives = 252/363 (69.42%), Query Frame = 0
Query: 106 QQGAILAPHRVRRFEVLASKNWDMFYKHNRDKFFKDRHYLWKDFPDLVPQGMKEGRGGRGGGRATDEEYEEEKLEDGEREDEGALQSRPSP---SEHPSSSSSSSSLLSSSLSFPPPHNPALQEQDVNQSKGND-----------SESQINTPAPHHRILIELGCGVGNAVFPLLERDPDLFVYALDFSPRAIALVKAHPLYKQTKRCQAIVHDAVLDPSLPPALTLNGGQADLCLCMYALSAMAPGKIKSVAVKIRAALKPGGRVLIRDYGRWDEAQLRFKRGHRLAENFYLRSDGTRAYYFSVEDLREMFGVGEGGEEGEEEGGGFKEVEVGYVRRQYINRGDAVTRRRVWVHARFEKPVE 455
QQG++L PHRV+R+E LA K WD FYK+NRD+FFKDRHYLW+DFPDLVP + A ++ + G E + + P P S PS SS SSSL P P D QS G++ ES ++ PA H R+LIELGCGVGNAVFPLL RDP+LF+YA DFSPRA+A++K HP+YK ++RC A V D V PSLPP LT NGGQADLCLCMYALSAMAP KI VA KI AALKPGGRVLIRDYGRWDEAQLRFKRGHRL ENFYLRSDGTRAYYFSVEDLR+MF G+E GGF+E+E GYVRRQYINR DA TRRRVWVHARFEK E
Sbjct: 1 QQGSLLPPHRVKRYETLAGKYWDTFYKNNRDRFFKDRHYLWRDFPDLVPPVLYNEE-------ACEKRTADRPNYGGNLEMKNMDVASPLPLSISHQPSPSSQGRLPASSSLPASVPSLP-----DRRQSLGSEVAHYASAEAFGGESGLDKPAAHQRVLIELGCGVGNAVFPLLARDPNLFIYAFDFSPRAVAILKNHPVYKNSRRCFAWVQDVVDTPSLPPFLTRNGGQADLCLCMYALSAMAPDKIHLVAHKIWAALKPGGRVLIRDYGRWDEAQLRFKRGHRLGENFYLRSDGTRAYYFSVEDLRKMFC-------GKE--GGFREIEAGYVRRQYINRADAATRRRVWVHARFEKVCE 342
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G06070.1 ID=NO02G06070.1|Name=NO02G06070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp ATGCCCCTTCCCGACGGCTACGACGAAATCACGACGGCGGCCGGTTGCTG GCTTTCCCTGGCCCTCTTCGCCTCCTCTTTCCCCTCGCCATCCCCACGAC AGTGCGTAGATGAGGGGATCTCCGTCATACTCCAACCTCCTCCTAACCCA CCACCAGCCCTACCCTCAGTCACGTTCTCGCAACCCTACCTCGACATCCA AGCCGCGCCGGTTCTCCCTCCCGGTGCGTCTCTCCTCGACCATCCCGAAT TGGTCTGGGCCGAGGACACGAGTACTGAGAGGGATGAAGCAGCTGCGGCC TTGCTTTGTGCTACGCAGCAAGGGGCTATCTTAGCCCCACACCGCGTCAG AAGATTCGAGGTGCTAGCGAGTAAGAATTGGGATATGTTCTATAAGCACA ATAGAGACAAGTTCTTCAAGGACCGGCATTACTTGTGGAAGGACTTCCCG GATTTGGTCCCGCAGGGAATGAAGGAGGGAAGGGGAGGGAGAGGGGGAGG AAGGGCAACCGATGAGGAATATGAGGAAGAGAAGTTGGAGGATGGAGAAA GAGAAGATGAAGGGGCTTTGCAGTCAAGACCATCACCATCGGAGCATCCA TCCTCTTCTTCTTCGTCTTCCAGCCTCCTCTCCTCCTCCCTTTCTTTCCC CCCTCCCCACAACCCCGCATTGCAAGAGCAAGACGTAAATCAAAGCAAAG GCAACGACTCTGAAAGTCAAATAAATACACCCGCCCCCCACCACCGCATC CTCATCGAGCTCGGCTGCGGGGTGGGAAACGCCGTCTTCCCTCTCCTCGA GAGAGACCCTGATCTCTTCGTGTATGCCCTTGACTTCTCCCCCCGTGCCA TCGCCCTTGTCAAGGCCCACCCGCTCTACAAGCAGACCAAACGCTGCCAA GCTATCGTCCACGATGCTGTCCTCGACCCCTCCCTCCCACCCGCCCTCAC CCTGAATGGAGGGCAGGCTGACCTGTGTCTGTGCATGTACGCCCTCTCGG CTATGGCCCCCGGGAAAATAAAGAGTGTCGCGGTGAAAATAAGAGCCGCA CTCAAGCCAGGGGGAAGGGTGCTCATTCGCGATTACGGGAGGTGGGATGA AGCGCAGCTGAGGTTCAAGAGGGGGCATCGGCTAGCGGAGAATTTTTATT TGCGCTCGGATGGAACGAGGGCGTACTATTTCAGCGTGGAGGACTTAAGG GAAATGTTTGGAGTAGGGGAGGGAGGGGAAGAGGGAGAGGAGGAAGGAGG GGGCTTTAAAGAAGTAGAAGTGGGATATGTGAGGAGGCAGTATATCAACC GGGGGGATGCGGTGACGAGGAGGAGGGTGTGGGTGCATGCACGGTTTGAG AAACCAGTAGAAAAGGGTAAGGGTAAGGGAGAGGGAGCAGATGTGATTGA AATGAACGTATAG back to topprotein sequence of NO02G06070.1 >NO02G06070.1-protein ID=NO02G06070.1-protein|Name=NO02G06070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp MPLPDGYDEITTAAGCWLSLALFASSFPSPSPRQCVDEGISVILQPPPNP PPALPSVTFSQPYLDIQAAPVLPPGASLLDHPELVWAEDTSTERDEAAAA LLCATQQGAILAPHRVRRFEVLASKNWDMFYKHNRDKFFKDRHYLWKDFP DLVPQGMKEGRGGRGGGRATDEEYEEEKLEDGEREDEGALQSRPSPSEHP SSSSSSSSLLSSSLSFPPPHNPALQEQDVNQSKGNDSESQINTPAPHHRI LIELGCGVGNAVFPLLERDPDLFVYALDFSPRAIALVKAHPLYKQTKRCQ AIVHDAVLDPSLPPALTLNGGQADLCLCMYALSAMAPGKIKSVAVKIRAA LKPGGRVLIRDYGRWDEAQLRFKRGHRLAENFYLRSDGTRAYYFSVEDLR EMFGVGEGGEEGEEEGGGFKEVEVGYVRRQYINRGDAVTRRRVWVHARFE KPVEKGKGKGEGADVIEMNV* back to topmRNA from alignment at chr2:1624150..1625562- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G06070.1 ID=NO02G06070.1|Name=NO02G06070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp|location=Sequence derived from alignment at chr2:1624150..1625562- (Nannochloropsis oceanica) ATGCCCCTTCCCGACGGCTACGACGAAATCACGACGGCGGCCGGTTGCTG
GCTTTCCCTGGCCCTCTTCGCCTCCTCTTTCCCCTCGCCATCCCCACGAC
AGTGCGTAGATGAGGGGATCTCCGTCATACTCCAACCTCCTCCTAACCCA
CCACCAGCCCTACCCTCAGTCACGTTCTCGCAACCCTACCTCGACATCCA
AGCCGCGCCGGTTCTCCCTCCCGGTGCGTCTCTCCTCGACCATCCCGAAT
TGGTCTGGGCCGAGGACACGAGTACTGAGAGGGATGAAGCAGCTGCGGCC
TTGCTTTGTGCTACGCAGCAAGGGGCTATCTTAGCCCCACACCGCGTCAG
AAGATTCGAGGTGCTAGCGAGTAAGAATTGGGATATGTTCTATAAGCACA
ATAGAGACAAGTTCTTCAAGGACCGGCATTACTTGTGGAAGGACTTCCCG
GATTTGGTCCCGCAGGGAATGAAGGAGGGAAGGGGAGGGAGAGGGGGAGG
AAGGGCAACCGATGAGGAATATGAGGAAGAGAAGTTGGAGGATGGAGAAA
GAGAAGATGAAGGGGCTTTGCAGTCAAGACCATCACCATCGGAGCATCCA
TCCTCTTCTTCTTCGTCTTCCAGCCTCCTCTCCTCCTCCCTTTCTTTCCC
CCCTCCCCACAACCCCGCATTGCAAGAGCAAGACGTAAATCAAAGCAAAG
GCAACGACTCTGAAAGTCAAATAAATACACCCGCCCCCCACCACCGCATC
CTCATCGAGCTCGGCTGCGGGGTGGGAAACGCCGTCTTCCCTCTCCTCGA
GAGAGACCCTGATCTCTTCGTGTATGCCCTTGACTTCTCCCCCCGTGCCA
TCGCCCTTGTCAAGGCCCACCCGCTCTACAAGCAGACCAAACGCTGCCAA
GCTATCGTCCACGATGCTGTCCTCGACCCCTCCCTCCCACCCGCCCTCAC
CCTGAATGGAGGGCAGGCTGACCTGTGTCTGTGCATGTACGCCCTCTCGG
CTATGGCCCCCGGGAAAATAAAGAGTGTCGCGGTGAAAATAAGAGCCGCA
CTCAAGCCAGGGGGAAGGGTGCTCATTCGCGATTACGGGAGGTGGGATGA
AGCGCAGCTGAGGTTCAAGAGGGGGCATCGGCTAGCGGAGAATTTTTATT
TGCGCTCGGATGGAACGAGGGCGTACTATTTCAGCGTGGAGGACTTAAGG
GAAATGTTTGGAGTAGGGGAGGGAGGGGAAGAGGGAGAGGAGGAAGGAGG
GGGCTTTAAAGAAGTAGAAGTGGGATATGTGAGGAGGCAGTATATCAACC
GGGGGGATGCGGTGACGAGGAGGAGGGTGTGGGTGCATGCACGGTTTGAG
AAACCAGTAGAAAAGGGTAAGGGTAAGGGAGAGGGAGCAGATGTGATTGA
AATGAACGTATAG back to topCoding sequence (CDS) from alignment at chr2:1624150..1625562- >NO02G06070.1 ID=NO02G06070.1|Name=NO02G06070.1|organism=Nannochloropsis oceanica|type=CDS|length=1413bp|location=Sequence derived from alignment at chr2:1624150..1625562- (Nannochloropsis oceanica) ATGCCCCTTCCCGACGGCTACGACGAAATCACGACGGCGGCCGGTTGCTG GCTTTCCCTGGCCCTCTTCGCCTCCTCTTTCCCCTCGCCATCCCCACGAC AGTGCGTAGATGAGGGGATCTCCGTCATACTCCAACCTCCTCCTAACCCA CCACCAGCCCTACCCTCAGTCACGTTCTCGCAACCCTACCTCGACATCCA AGCCGCGCCGGTTCTCCCTCCCGGTGCGTCTCTCCTCGACCATCCCGAAT TGGTCTGGGCCGAGGACACGAGTACTGAGAGGGATGAAGCAGCTGCGGCC TTGCTTTGTGCTACGCAGCAAGGGGCTATCTTAGCCCCACACCGCGTCAG AAGATTCGAGGTGCTAGCGAGTAAGAATTGGGATATGTTCTATAAGCACA ATAGAGACAAGTTCTTCAAGGACCGGCATTACTTGTGGAAGGACTTCCCG GATTTGGTCCCGCAGGGAATGAAGGAGGGAAGGGGAGGGAGAGGGGGAGG AAGGGCAACCGATGAGGAATATGAGGAAGAGAAGTTGGAGGATGGAGAAA GAGAAGATGAAGGGGCTTTGCAGTCAAGACCATCACCATCGGAGCATCCA TCCTCTTCTTCTTCGTCTTCCAGCCTCCTCTCCTCCTCCCTTTCTTTCCC CCCTCCCCACAACCCCGCATTGCAAGAGCAAGACGTAAATCAAAGCAAAG GCAACGACTCTGAAAGTCAAATAAATACACCCGCCCCCCACCACCGCATC CTCATCGAGCTCGGCTGCGGGGTGGGAAACGCCGTCTTCCCTCTCCTCGA GAGAGACCCTGATCTCTTCGTGTATGCCCTTGACTTCTCCCCCCGTGCCA TCGCCCTTGTCAAGGCCCACCCGCTCTACAAGCAGACCAAACGCTGCCAA GCTATCGTCCACGATGCTGTCCTCGACCCCTCCCTCCCACCCGCCCTCAC CCTGAATGGAGGGCAGGCTGACCTGTGTCTGTGCATGTACGCCCTCTCGG CTATGGCCCCCGGGAAAATAAAGAGTGTCGCGGTGAAAATAAGAGCCGCA CTCAAGCCAGGGGGAAGGGTGCTCATTCGCGATTACGGGAGGTGGGATGA AGCGCAGCTGAGGTTCAAGAGGGGGCATCGGCTAGCGGAGAATTTTTATT TGCGCTCGGATGGAACGAGGGCGTACTATTTCAGCGTGGAGGACTTAAGG GAAATGTTTGGAGTAGGGGAGGGAGGGGAAGAGGGAGAGGAGGAAGGAGG GGGCTTTAAAGAAGTAGAAGTGGGATATGTGAGGAGGCAGTATATCAACC GGGGGGATGCGGTGACGAGGAGGAGGGTGTGGGTGCATGCACGGTTTGAG AAACCAGTAGAAAAGGGTAAGGGTAAGGGAGAGGGAGCAGATGTGATTGA AATGAACGTATAG back to top
|