NO02G06070.1, NO02G06070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G06070.1
Unique NameNO02G06070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1413
Alignment locationchr2:1624150..1625562 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1624150..1625562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G06070.1 vs.
Match: XP_005854926.1 (methyltransferase like 8, partial [Nannochloropsis gaditana CCMP526]; EKU21434.1 methyltransferase like 8, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 397.1 bits (1019), Expect = 7.500e-107
Identity = 222/363 (61.16%), Postives = 252/363 (69.42%), Query Frame = 0
Query:  106 QQGAILAPHRVRRFEVLASKNWDMFYKHNRDKFFKDRHYLWKDFPDLVPQGMKEGRGGRGGGRATDEEYEEEKLEDGEREDEGALQSRPSP---SEHPSSSSSSSSLLSSSLSFPPPHNPALQEQDVNQSKGND-----------SESQINTPAPHHRILIELGCGVGNAVFPLLERDPDLFVYALDFSPRAIALVKAHPLYKQTKRCQAIVHDAVLDPSLPPALTLNGGQADLCLCMYALSAMAPGKIKSVAVKIRAALKPGGRVLIRDYGRWDEAQLRFKRGHRLAENFYLRSDGTRAYYFSVEDLREMFGVGEGGEEGEEEGGGFKEVEVGYVRRQYINRGDAVTRRRVWVHARFEKPVE 455
            QQG++L PHRV+R+E LA K WD FYK+NRD+FFKDRHYLW+DFPDLVP  +           A ++   +     G  E +    + P P   S  PS SS      SSSL    P  P     D  QS G++            ES ++ PA H R+LIELGCGVGNAVFPLL RDP+LF+YA DFSPRA+A++K HP+YK ++RC A V D V  PSLPP LT NGGQADLCLCMYALSAMAP KI  VA KI AALKPGGRVLIRDYGRWDEAQLRFKRGHRL ENFYLRSDGTRAYYFSVEDLR+MF        G+E  GGF+E+E GYVRRQYINR DA TRRRVWVHARFEK  E
Sbjct:    1 QQGSLLPPHRVKRYETLAGKYWDTFYKNNRDRFFKDRHYLWRDFPDLVPPVLYNEE-------ACEKRTADRPNYGGNLEMKNMDVASPLPLSISHQPSPSSQGRLPASSSLPASVPSLP-----DRRQSLGSEVAHYASAEAFGGESGLDKPAAHQRVLIELGCGVGNAVFPLLARDPNLFIYAFDFSPRAVAILKNHPVYKNSRRCFAWVQDVVDTPSLPPFLTRNGGQADLCLCMYALSAMAPDKIHLVAHKIWAALKPGGRVLIRDYGRWDEAQLRFKRGHRLGENFYLRSDGTRAYYFSVEDLRKMFC-------GKE--GGFREIEAGYVRRQYINRADAATRRRVWVHARFEKVCE 342          
The following BLAST results are available for this feature:
BLAST of NO02G06070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854926.17.500e-10761.16methyltransferase like 8, partial [Nannochloropsis... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G06070NO02G06070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G06070.1NO02G06070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G06070.1.cds1NO02G06070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G06070.1 ID=NO02G06070.1|Name=NO02G06070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp
ATGCCCCTTCCCGACGGCTACGACGAAATCACGACGGCGGCCGGTTGCTG
GCTTTCCCTGGCCCTCTTCGCCTCCTCTTTCCCCTCGCCATCCCCACGAC
AGTGCGTAGATGAGGGGATCTCCGTCATACTCCAACCTCCTCCTAACCCA
CCACCAGCCCTACCCTCAGTCACGTTCTCGCAACCCTACCTCGACATCCA
AGCCGCGCCGGTTCTCCCTCCCGGTGCGTCTCTCCTCGACCATCCCGAAT
TGGTCTGGGCCGAGGACACGAGTACTGAGAGGGATGAAGCAGCTGCGGCC
TTGCTTTGTGCTACGCAGCAAGGGGCTATCTTAGCCCCACACCGCGTCAG
AAGATTCGAGGTGCTAGCGAGTAAGAATTGGGATATGTTCTATAAGCACA
ATAGAGACAAGTTCTTCAAGGACCGGCATTACTTGTGGAAGGACTTCCCG
GATTTGGTCCCGCAGGGAATGAAGGAGGGAAGGGGAGGGAGAGGGGGAGG
AAGGGCAACCGATGAGGAATATGAGGAAGAGAAGTTGGAGGATGGAGAAA
GAGAAGATGAAGGGGCTTTGCAGTCAAGACCATCACCATCGGAGCATCCA
TCCTCTTCTTCTTCGTCTTCCAGCCTCCTCTCCTCCTCCCTTTCTTTCCC
CCCTCCCCACAACCCCGCATTGCAAGAGCAAGACGTAAATCAAAGCAAAG
GCAACGACTCTGAAAGTCAAATAAATACACCCGCCCCCCACCACCGCATC
CTCATCGAGCTCGGCTGCGGGGTGGGAAACGCCGTCTTCCCTCTCCTCGA
GAGAGACCCTGATCTCTTCGTGTATGCCCTTGACTTCTCCCCCCGTGCCA
TCGCCCTTGTCAAGGCCCACCCGCTCTACAAGCAGACCAAACGCTGCCAA
GCTATCGTCCACGATGCTGTCCTCGACCCCTCCCTCCCACCCGCCCTCAC
CCTGAATGGAGGGCAGGCTGACCTGTGTCTGTGCATGTACGCCCTCTCGG
CTATGGCCCCCGGGAAAATAAAGAGTGTCGCGGTGAAAATAAGAGCCGCA
CTCAAGCCAGGGGGAAGGGTGCTCATTCGCGATTACGGGAGGTGGGATGA
AGCGCAGCTGAGGTTCAAGAGGGGGCATCGGCTAGCGGAGAATTTTTATT
TGCGCTCGGATGGAACGAGGGCGTACTATTTCAGCGTGGAGGACTTAAGG
GAAATGTTTGGAGTAGGGGAGGGAGGGGAAGAGGGAGAGGAGGAAGGAGG
GGGCTTTAAAGAAGTAGAAGTGGGATATGTGAGGAGGCAGTATATCAACC
GGGGGGATGCGGTGACGAGGAGGAGGGTGTGGGTGCATGCACGGTTTGAG
AAACCAGTAGAAAAGGGTAAGGGTAAGGGAGAGGGAGCAGATGTGATTGA
AATGAACGTATAG
back to top

protein sequence of NO02G06070.1

>NO02G06070.1-protein ID=NO02G06070.1-protein|Name=NO02G06070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MPLPDGYDEITTAAGCWLSLALFASSFPSPSPRQCVDEGISVILQPPPNP
PPALPSVTFSQPYLDIQAAPVLPPGASLLDHPELVWAEDTSTERDEAAAA
LLCATQQGAILAPHRVRRFEVLASKNWDMFYKHNRDKFFKDRHYLWKDFP
DLVPQGMKEGRGGRGGGRATDEEYEEEKLEDGEREDEGALQSRPSPSEHP
SSSSSSSSLLSSSLSFPPPHNPALQEQDVNQSKGNDSESQINTPAPHHRI
LIELGCGVGNAVFPLLERDPDLFVYALDFSPRAIALVKAHPLYKQTKRCQ
AIVHDAVLDPSLPPALTLNGGQADLCLCMYALSAMAPGKIKSVAVKIRAA
LKPGGRVLIRDYGRWDEAQLRFKRGHRLAENFYLRSDGTRAYYFSVEDLR
EMFGVGEGGEEGEEEGGGFKEVEVGYVRRQYINRGDAVTRRRVWVHARFE
KPVEKGKGKGEGADVIEMNV*
back to top

mRNA from alignment at chr2:1624150..1625562-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G06070.1 ID=NO02G06070.1|Name=NO02G06070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp|location=Sequence derived from alignment at chr2:1624150..1625562- (Nannochloropsis oceanica)
ATGCCCCTTCCCGACGGCTACGACGAAATCACGACGGCGGCCGGTTGCTG GCTTTCCCTGGCCCTCTTCGCCTCCTCTTTCCCCTCGCCATCCCCACGAC AGTGCGTAGATGAGGGGATCTCCGTCATACTCCAACCTCCTCCTAACCCA CCACCAGCCCTACCCTCAGTCACGTTCTCGCAACCCTACCTCGACATCCA AGCCGCGCCGGTTCTCCCTCCCGGTGCGTCTCTCCTCGACCATCCCGAAT TGGTCTGGGCCGAGGACACGAGTACTGAGAGGGATGAAGCAGCTGCGGCC TTGCTTTGTGCTACGCAGCAAGGGGCTATCTTAGCCCCACACCGCGTCAG AAGATTCGAGGTGCTAGCGAGTAAGAATTGGGATATGTTCTATAAGCACA ATAGAGACAAGTTCTTCAAGGACCGGCATTACTTGTGGAAGGACTTCCCG GATTTGGTCCCGCAGGGAATGAAGGAGGGAAGGGGAGGGAGAGGGGGAGG AAGGGCAACCGATGAGGAATATGAGGAAGAGAAGTTGGAGGATGGAGAAA GAGAAGATGAAGGGGCTTTGCAGTCAAGACCATCACCATCGGAGCATCCA TCCTCTTCTTCTTCGTCTTCCAGCCTCCTCTCCTCCTCCCTTTCTTTCCC CCCTCCCCACAACCCCGCATTGCAAGAGCAAGACGTAAATCAAAGCAAAG GCAACGACTCTGAAAGTCAAATAAATACACCCGCCCCCCACCACCGCATC CTCATCGAGCTCGGCTGCGGGGTGGGAAACGCCGTCTTCCCTCTCCTCGA GAGAGACCCTGATCTCTTCGTGTATGCCCTTGACTTCTCCCCCCGTGCCA TCGCCCTTGTCAAGGCCCACCCGCTCTACAAGCAGACCAAACGCTGCCAA GCTATCGTCCACGATGCTGTCCTCGACCCCTCCCTCCCACCCGCCCTCAC CCTGAATGGAGGGCAGGCTGACCTGTGTCTGTGCATGTACGCCCTCTCGG CTATGGCCCCCGGGAAAATAAAGAGTGTCGCGGTGAAAATAAGAGCCGCA CTCAAGCCAGGGGGAAGGGTGCTCATTCGCGATTACGGGAGGTGGGATGA AGCGCAGCTGAGGTTCAAGAGGGGGCATCGGCTAGCGGAGAATTTTTATT TGCGCTCGGATGGAACGAGGGCGTACTATTTCAGCGTGGAGGACTTAAGG GAAATGTTTGGAGTAGGGGAGGGAGGGGAAGAGGGAGAGGAGGAAGGAGG GGGCTTTAAAGAAGTAGAAGTGGGATATGTGAGGAGGCAGTATATCAACC GGGGGGATGCGGTGACGAGGAGGAGGGTGTGGGTGCATGCACGGTTTGAG AAACCAGTAGAAAAGGGTAAGGGTAAGGGAGAGGGAGCAGATGTGATTGA AATGAACGTATAG
back to top

Coding sequence (CDS) from alignment at chr2:1624150..1625562-

>NO02G06070.1 ID=NO02G06070.1|Name=NO02G06070.1|organism=Nannochloropsis oceanica|type=CDS|length=1413bp|location=Sequence derived from alignment at chr2:1624150..1625562- (Nannochloropsis oceanica)
ATGCCCCTTCCCGACGGCTACGACGAAATCACGACGGCGGCCGGTTGCTG
GCTTTCCCTGGCCCTCTTCGCCTCCTCTTTCCCCTCGCCATCCCCACGAC
AGTGCGTAGATGAGGGGATCTCCGTCATACTCCAACCTCCTCCTAACCCA
CCACCAGCCCTACCCTCAGTCACGTTCTCGCAACCCTACCTCGACATCCA
AGCCGCGCCGGTTCTCCCTCCCGGTGCGTCTCTCCTCGACCATCCCGAAT
TGGTCTGGGCCGAGGACACGAGTACTGAGAGGGATGAAGCAGCTGCGGCC
TTGCTTTGTGCTACGCAGCAAGGGGCTATCTTAGCCCCACACCGCGTCAG
AAGATTCGAGGTGCTAGCGAGTAAGAATTGGGATATGTTCTATAAGCACA
ATAGAGACAAGTTCTTCAAGGACCGGCATTACTTGTGGAAGGACTTCCCG
GATTTGGTCCCGCAGGGAATGAAGGAGGGAAGGGGAGGGAGAGGGGGAGG
AAGGGCAACCGATGAGGAATATGAGGAAGAGAAGTTGGAGGATGGAGAAA
GAGAAGATGAAGGGGCTTTGCAGTCAAGACCATCACCATCGGAGCATCCA
TCCTCTTCTTCTTCGTCTTCCAGCCTCCTCTCCTCCTCCCTTTCTTTCCC
CCCTCCCCACAACCCCGCATTGCAAGAGCAAGACGTAAATCAAAGCAAAG
GCAACGACTCTGAAAGTCAAATAAATACACCCGCCCCCCACCACCGCATC
CTCATCGAGCTCGGCTGCGGGGTGGGAAACGCCGTCTTCCCTCTCCTCGA
GAGAGACCCTGATCTCTTCGTGTATGCCCTTGACTTCTCCCCCCGTGCCA
TCGCCCTTGTCAAGGCCCACCCGCTCTACAAGCAGACCAAACGCTGCCAA
GCTATCGTCCACGATGCTGTCCTCGACCCCTCCCTCCCACCCGCCCTCAC
CCTGAATGGAGGGCAGGCTGACCTGTGTCTGTGCATGTACGCCCTCTCGG
CTATGGCCCCCGGGAAAATAAAGAGTGTCGCGGTGAAAATAAGAGCCGCA
CTCAAGCCAGGGGGAAGGGTGCTCATTCGCGATTACGGGAGGTGGGATGA
AGCGCAGCTGAGGTTCAAGAGGGGGCATCGGCTAGCGGAGAATTTTTATT
TGCGCTCGGATGGAACGAGGGCGTACTATTTCAGCGTGGAGGACTTAAGG
GAAATGTTTGGAGTAGGGGAGGGAGGGGAAGAGGGAGAGGAGGAAGGAGG
GGGCTTTAAAGAAGTAGAAGTGGGATATGTGAGGAGGCAGTATATCAACC
GGGGGGATGCGGTGACGAGGAGGAGGGTGTGGGTGCATGCACGGTTTGAG
AAACCAGTAGAAAAGGGTAAGGGTAAGGGAGAGGGAGCAGATGTGATTGA
AATGAACGTATAG
back to top
Synonyms
Publications