NO02G06030.1, NO02G06030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G06030.1
Unique NameNO02G06030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1694
Alignment locationchr2:1614730..1616809 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1614730..1616809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G06030.1 vs.
Match: EWM30075.1 (major facilitator superfamily domain-containing protein [Nannochloropsis gaditana]; EWM30076.1 major facilitator superfamily domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 357.8 bits (917), Expect = 4.700e-95
Identity = 202/348 (58.05%), Postives = 262/348 (75.29%), Query Frame = 0 
Query:   90 SCIIPSVPPLLYARTSGGGRASNPSIPGNRLRSSFLAEIEGLKKPTLGRFAVSWSHNHSSYHDPPGLVRLPTTRELYPEGVKASKEARALCVPGTPGHMFVLSCACFVVVGSVAAKVVLMAVSVELMADMGMSLQMYGVVGGLPSLTSIFACPLGGGVVDAIGSDRGCLLFAAVVLLGSACGAVGVSIRSLPLLMAGQLVLGLGEKPLGSGQLVFIRLAADPANLAFYFSVASSVYRTASFGSFVLAPLVAAASPIGYRASVYMATGLCFLSLLSSLPMLGKLRHLDAYLRPA-AVVGEELGEEMYLMERGKEGGKEMRRKRKDKAEEEEEEGGSEGGERTRWWKRGW 437
            S I+P  PP L    S     ++ S  G++LRSSF+ EI  L KPTL R AVS+  + + + DPPGL R+PTT EL+PEGVK +KEA+ALCVPGT G++F+L CACF++VGSVAAK VLMAVSV+LMA M MS++ YGVV GLPSL+SIFAC +GG V+DAIG+D+ C+LF  +VLLG+A   V VS+RSL LL+ GQ+VLG+GEKPLGSGQLVFIRLA DPA + FYF+VAS+ YR ASFG+F+L+PLVA +S  G++AS++M T LCFLS LS+ PMLGKL+HL+ +L+ A  VVGEE GEE+ LM    +   EM +  +++  + E++G S  GE +  W RGW
Sbjct:   34 SYIMPKAPPSLSGPNSAAEGGTSASRIGSQLRSSFINEINTLTKPTLSRLAVSYVGS-APFSDPPGLARIPTTTELFPEGVKGNKEAQALCVPGTAGNVFILGCACFIMVGSVAAKEVLMAVSVQLMAHMPMSIKTYGVVSGLPSLSSIFACLVGGPVIDAIGADKACVLFTFIVLLGNAMATVSVSLRSLSLLLVGQVVLGVGEKPLGSGQLVFIRLACDPAKVGFYFAVASAAYRAASFGTFILSPLVAESSTYGFQASMWMGTILCFLSFLSAFPMLGKLKHLEPFLKAAPVVVGEEEGEEVILM----KSNLEMEQVEEEEDGQSEDKGKSASGEGS--W-RGW 373
The following BLAST results are available for this feature:
BLAST of NO02G06030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30075.14.700e-9558.05major facilitator superfamily domain-containing pr... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G06030NO02G06030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G06030.1NO02G06030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G06030.1.cds1NO02G06030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G06030.1.cds2NO02G06030.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G06030.1.cds3NO02G06030.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G06030.1 ID=NO02G06030.1|Name=NO02G06030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1694bp
CCTGGAGCAAGATACCATATAACCACTTCACGGTCCAAGCGGCTGCACAA
GCTCATTTTTTTTTTCCCTCTGGGAAACTATCCACTCAAGGTTGTCCAAA
TTTAGCCGGGTAACTCATCATAACTCAACCCCACTCAGGTAATGAAGCTT
CGGAGTACAGGAGCCATCCACTCTCTATGTCTCCGATTTCTGACCTGCGC
CCCTCAATCCTGCTTGCACAGACGCGTTAAATAGGGAGCCTGACCAATCG
GACAGAAATAATGGATGAGAAGGCATCTGTACATGGTGACATCGGCAAAG
GCAATCGAATGTTGCCACTTGTTTGAGTGCAATGGACTGTTCATGTCCCA
AATCTCATCCTTGTTACTGCACCTGACATGCGTCTTGATGGGATAGTTAA
TCTCTCTTTACCTTCCTTCCTTTTTTCGTTGTCCTGCCCTACATGCATCA
GACAACAATCTTCCATAGCTGGACACCCTTCCAACTCCATAACCTTGGCG
TCGCCCTCAAGATTCACCAACCAACAGTTGTCCACCAATATGGCCGAGCT
TTTGTCAGTTTCTCCTCTCGATGCGGCAGATAACGAAGGCCCTCTTGGCC
CCGAAACTATCCGACCTCCCCTCATACAATCGGCGCGGGCTGAATCCTGT
ATCATACCCTCCGTCCCTCCCCTCCTATATGCCCGTACATCAGGTGGGGG
AAGAGCAAGCAATCCCTCCATCCCAGGCAACCGTCTTCGCTCCTCCTTTC
TCGCCGAGATAGAGGGTCTGAAAAAGCCTACACTTGGCCGGTTTGCCGTT
TCCTGGAGCCATAACCACTCCTCATACCATGACCCCCCGGGTCTCGTGCG
GCTGCCCACGACTCGGGAATTGTACCCTGAGGGCGTCAAGGCAAGCAAAG
AGGCCCGCGCCCTTTGCGTGCCGGGAACGCCTGGGCACATGTTTGTCCTT
AGTTGTGCGTGCTTTGTGGTGGTGGGGAGCGTCGCAGCGAAGGTGGTGCT
GATGGCGGTTTCTGTTGAACTCATGGCCGACATGGGCATGTCCCTCCAGA
TGTACGGTGTTGTAGGAGGTCTGCCATCGCTCACCTCCATCTTTGCCTGT
CCTCTCGGAGGAGGCGTAGTGGATGCTATTGGGTCCGACAGGGGCTGCCT
CCTCTTTGCCGCCGTGGTGTTGTTAGGGAGCGCGTGTGGGGCAGTTGGAG
TCTCCATTCGCTCTCTCCCCCTCCTCATGGCAGGTCAACTTGTGCTCGGA
CTGGGCGAAAAACCTCTTGGCTCCGGCCAGCTCGTCTTTATCCGCCTTGC
GGCCGACCCCGCCAACCTGGCATTTTATTTTTCAGTCGCCTCGTCCGTCT
ACCGCACCGCGTCGTTTGGCAGTTTTGTGCTTGCTCCCCTTGTGGCTGCG
GCGTCTCCGATCGGGTACCGTGCGAGCGTTTACATGGCCACCGGTCTGTG
CTTCCTCTCTTTGTTGTCTTCACTGCCAATGCTGGGGAAACTGCGACATT
TGGACGCGTATTTGAGGCCGGCGGCGGTGGTGGGGGAGGAACTGGGAGAG
GAAATGTATTTGATGGAGAGGGGGAAAGAGGGGGGGAAAGAGATGAGGAG
GAAGAGGAAGGACAAGGCAGAGGAGGAGGAGGAGGAGGGGGGGAGTGAGG
GGGGGGAAAGGACGAGGTGGTGGAAAAGAGGGTGGACGAAGTAG
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protein sequence of NO02G06030.1

>NO02G06030.1-protein ID=NO02G06030.1-protein|Name=NO02G06030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=439bp
MRLDGIVNLSLPSFLFSLSCPTCIRQQSSIAGHPSNSITLASPSRFTNQQ
LSTNMAELLSVSPLDAADNEGPLGPETIRPPLIQSARAESCIIPSVPPLL
YARTSGGGRASNPSIPGNRLRSSFLAEIEGLKKPTLGRFAVSWSHNHSSY
HDPPGLVRLPTTRELYPEGVKASKEARALCVPGTPGHMFVLSCACFVVVG
SVAAKVVLMAVSVELMADMGMSLQMYGVVGGLPSLTSIFACPLGGGVVDA
IGSDRGCLLFAAVVLLGSACGAVGVSIRSLPLLMAGQLVLGLGEKPLGSG
QLVFIRLAADPANLAFYFSVASSVYRTASFGSFVLAPLVAAASPIGYRAS
VYMATGLCFLSLLSSLPMLGKLRHLDAYLRPAAVVGEELGEEMYLMERGK
EGGKEMRRKRKDKAEEEEEEGGSEGGERTRWWKRGWTK*
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mRNA from alignment at chr2:1614730..1616809+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G06030.1 ID=NO02G06030.1|Name=NO02G06030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2080bp|location=Sequence derived from alignment at chr2:1614730..1616809+ (Nannochloropsis oceanica)
CCTGGAGCAAGATACCATATAACCACTTCACGGTCCAAGCGGCTGCACAA
GCTCATTTTTTTTTTCCCTCTGGGAAACTATCCACTCAAGGTTGTCCAAA
TTTAGCCGGGTAACTCATCATAACTCAACCCCACTCAGGTAATGAAGCTT
CGGAGTACAGGAGCCATCCACTCTCTATGTCTCCGATTTCTGACCTGCGC
CCCTCAATCCTGCTTGCACAGACGCGTTAAATAGGGAGCCTGACCAATCG
GACAGAAATAATGGATGAGAAGGCATCTGTACATGGTGACATCGGCAAAG
GCAATCGAATGTTGCCACTTGTTTGAGTGCAATGGACTGTTCATGTCCCA
AATCTCATCCTTGTTACTGCACCTGACATGCGTCTTGATGGGATAGTTAA
TCTCTCTTTACCTTCCTTCCTTTTTTCGTTGTCCTGCCCTACATGCATCA
GACAACAATCTTCCATAGCTGGACACCCTTCCAACTCCATAACCTTGGCG
TCGCCCTCAAGATTCACCAACCAACAGTTGTCCACCAATATGGCCGAGCT
TTTGTCAGTTTCTCCTCTCGATGCGGCAGATAACGAAGGCCCTCTTGGCC
CCGAAACTATCCGACCTCCCCTCATACAATCGGCGCGGGCTGAATCCTGT
ATCATACCCTCCGTCCCTCCCCTCCTATATGCCCGTACATCAGGTGGGGG
AAGAGCAAGCAATCCCTCCATCCCAGGCAACCGTCTTCGCTCCTCCTTTC
TCGCCGAGATAGAGGGTCTGAAAAAGCCTACACTTGGCCGGTTTGCCGTT
TCCTGGAGCCATAACCACTCCTCATACCATGACCCCCCGGGTCTCGTGCG
GCTGCCCACGACTCGGGAATTGTACCCTGAGGGCGTCAAGGCAAGCAAAG
AGGCCCGCGCCCTTTGCGTGCCGGGAACGCCTGGGCACATGTTTGTCCTT
AGTTGTGCGTGCTTTGTGGTGGTGGGGAGCGTCGCAGCGAAGGTGGTGCT
GATGGCGGTTTCTGTTGAAGTAAGTCTTGGTCGGGAGGGTGTCAGGAAGG
AGAGAGGAAGCTCTGAGGAATGTGGGAGGGAAGATATACAGGGGGCTTAA
AGGAGGGTGCATGGCTTCACGTACTGGGGGATTAAATGGAAGCATACCGC
TGCCATAGAGAAGGCAGTGGTAAAAGCAAATGATTTGGCATAAAGAACGC
GAGACGGGAGTCACAAAACTCTCACACCCTACCTCCCTCCATTCTTTTCA
CCATCTCTTCCTTCCTCTCTTCCTTCTTCCCACCACCGGAAGCTCATGGC
CGACATGGGCATGTCCCTCCAGATGTACGGTGTTGTAGGAGGTCTGCCAT
CGCTCACCTCCATCTTTGCCTGTCCTCTCGGAGGAGGCGTAGTGGATGCT
ATTGGGTCCGACAGGGGCTGCCTCCTCTTTGCCGCCGTGGTGTTGTTAGG
GAGCGCGTGTGGGGCAGTTGGAGTCTCCATTCGGTACGGTTCCATCTTTC
CCCACAATTCACGCGTCGATGGGTAAACATCAGAAGAAAGCGAAAGGTCA
ACCGCTCTCCTTTCCTCCCTTCCTCCCTCCCTCCCGCCCTTGCCAGCTCT
CTCCCCCTCCTCATGGCAGGTCAACTTGTGCTCGGACTGGGCGAAAAACC
TCTTGGCTCCGGCCAGCTCGTCTTTATCCGCCTTGCGGCCGACCCCGCCA
ACCTGGCATTTTATTTTTCAGTCGCCTCGTCCGTCTACCGCACCGCGTCG
TTTGGCAGTTTTGTGCTTGCTCCCCTTGTGGCTGCGGCGTCTCCGATCGG
GTACCGTGCGAGCGTTTACATGGCCACCGGTCTGTGCTTCCTCTCTTTGT
TGTCTTCACTGCCAATGCTGGGGAAACTGCGACATTTGGACGCGTATTTG
AGGCCGGCGGCGGTGGTGGGGGAGGAACTGGGAGAGGAAATGTATTTGAT
GGAGAGGGGGAAAGAGGGGGGGAAAGAGATGAGGAGGAAGAGGAAGGACA
AGGCAGAGGAGGAGGAGGAGGAGGGGGGGAGTGAGGGGGGGGAAAGGACG
AGGTGGTGGAAAAGAGGGTGGACGAAGTAG
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Coding sequence (CDS) from alignment at chr2:1614730..1616809+

>NO02G06030.1 ID=NO02G06030.1|Name=NO02G06030.1|organism=Nannochloropsis oceanica|type=CDS|length=1317bp|location=Sequence derived from alignment at chr2:1614730..1616809+ (Nannochloropsis oceanica)
ATGCGTCTTGATGGGATAGTTAATCTCTCTTTACCTTCCTTCCTTTTTTC
GTTGTCCTGCCCTACATGCATCAGACAACAATCTTCCATAGCTGGACACC
CTTCCAACTCCATAACCTTGGCGTCGCCCTCAAGATTCACCAACCAACAG
TTGTCCACCAATATGGCCGAGCTTTTGTCAGTTTCTCCTCTCGATGCGGC
AGATAACGAAGGCCCTCTTGGCCCCGAAACTATCCGACCTCCCCTCATAC
AATCGGCGCGGGCTGAATCCTGTATCATACCCTCCGTCCCTCCCCTCCTA
TATGCCCGTACATCAGGTGGGGGAAGAGCAAGCAATCCCTCCATCCCAGG
CAACCGTCTTCGCTCCTCCTTTCTCGCCGAGATAGAGGGTCTGAAAAAGC
CTACACTTGGCCGGTTTGCCGTTTCCTGGAGCCATAACCACTCCTCATAC
CATGACCCCCCGGGTCTCGTGCGGCTGCCCACGACTCGGGAATTGTACCC
TGAGGGCGTCAAGGCAAGCAAAGAGGCCCGCGCCCTTTGCGTGCCGGGAA
CGCCTGGGCACATGTTTGTCCTTAGTTGTGCGTGCTTTGTGGTGGTGGGG
AGCGTCGCAGCGAAGGTGGTGCTGATGGCGGTTTCTGTTGAACTCATGGC
CGACATGGGCATGTCCCTCCAGATGTACGGTGTTGTAGGAGGTCTGCCAT
CGCTCACCTCCATCTTTGCCTGTCCTCTCGGAGGAGGCGTAGTGGATGCT
ATTGGGTCCGACAGGGGCTGCCTCCTCTTTGCCGCCGTGGTGTTGTTAGG
GAGCGCGTGTGGGGCAGTTGGAGTCTCCATTCGCTCTCTCCCCCTCCTCA
TGGCAGGTCAACTTGTGCTCGGACTGGGCGAAAAACCTCTTGGCTCCGGC
CAGCTCGTCTTTATCCGCCTTGCGGCCGACCCCGCCAACCTGGCATTTTA
TTTTTCAGTCGCCTCGTCCGTCTACCGCACCGCGTCGTTTGGCAGTTTTG
TGCTTGCTCCCCTTGTGGCTGCGGCGTCTCCGATCGGGTACCGTGCGAGC
GTTTACATGGCCACCGGTCTGTGCTTCCTCTCTTTGTTGTCTTCACTGCC
AATGCTGGGGAAACTGCGACATTTGGACGCGTATTTGAGGCCGGCGGCGG
TGGTGGGGGAGGAACTGGGAGAGGAAATGTATTTGATGGAGAGGGGGAAA
GAGGGGGGGAAAGAGATGAGGAGGAAGAGGAAGGACAAGGCAGAGGAGGA
GGAGGAGGAGGGGGGGAGTGAGGGGGGGGAAAGGACGAGGTGGTGGAAAA
GAGGGTGGACGAAGTAG
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Synonyms
Publications