NO02G05950.1, NO02G05950.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G05950.1
Unique Name	NO02G05950.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2328
Alignment location	chr2:1586092..1588419 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:1586092..1588419 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO02G05950.1 vs.

BLAST of NO02G05950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G05950	NO02G05950	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G05950.1	NO02G05950.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G05950.1.cds1	NO02G05950.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:1586092..1588419+
coding sequence from alignment at chr2:1586092..1588419+

mRNA sequence

>NO02G05950.1 ID=NO02G05950.1|Name=NO02G05950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2328bp
ACAGAGAGAAAAGCACAAAGATACCACGCTAGGTCAGCAATCGCAGCTAC
GACTATCACCCTGTCAACCAGCAGCCACACCACACCGATCACCTCTGCAC
GCACACAAACAGGAGGGTCTCACGCCATGCCGGTGCTGGACCACTCCTAT
TGGCAATGGCTGAAGCATGCGTTGCCAGTTGCGTGGACTCTTGGGCTCAG
TGCCATTCTTCTTGCAATGTGCCTTCCGGACACCGGTCCCGAGGGCTCGC
CTTTGCTCGTCCTTATGGTGTTGGGCATGGGTCTCGCTCTGTATAGCGCG
GCGGCCTTAGGCTGGCTAATCATCTCTGCAGAAAGCAAGGCGCAAGAGTG
GGGACATGGCTTGACGGAACCGGAACTCGACCTGTTGTACGAGGCGCCTT
CTTTACCTCTAAGGGAAGTGGTGGACATTCTCGGAACAGACTCGACCACT
GGCCTCAGCCACCGTCACGCCCAAGCCCGAGAAACGGAGTCGTCGCAAGA
GGCACGTCGCAAGTCTTCCCCATCACATTGGGCCGTCCATACCCTCTTTC
AGGCATTGCATGAAGAAGTCTGGGGTTCTTCCTCCTGGCCCATCGCCGCC
CTCCTCTCCCTGGCCCTTGTGCAAGCTGCGGTCTTGTCACCTTCTTCGCC
TATCCTCCCCTTGGGACTCACCCTCGTGCTCGTCGTCCTCTCGCTCTCCA
TCCTCCGGCGCTGGCGGGCAGCATGGTGTTTGCGCATGTGCACCCGGGGC
GACACAGGGGCCTTGCCTGCGTTGGGACCGGTGACGGTGGTGCGGCAAGG
GGAAGTGATGCAACTGCCGGTGGAGAGGGTAGTGGTGGGTGACTTATTGC
TTCTCTCCCCGGGCCAGGAATTGTGCGCGGATGTGCGGCTGGTGGAGGTG
GAGGCAGGACCGACGAGGAGGATCAACCTAGAGATGGACGAAAGCGTGTT
GGATGAGCTGAGGCTGAGGCTTTTGGCGTTGGGGATGACGGTGGAGGGAG
GGCCGGTGGCGGGAGGGAGGACCGGGCTGCTGTCCCCTGGCAGGGGCATG
GGAGAAGAGGCGCAACAGCAGGAGCAGGAGCAGCAAGAGCAGCAGGAGCA
GTGGAAGCCGCAGCGACAGGGAATGTTTTCCTTTACTGACGAAGAGGTGC
GTATGCACGGATTGCCTGGTGGCAAACCAACGGCGCCGCGGCCGCAAGGC
TCTCCTCCACCTCATACGGGCCTGCACCATCATGTCTCCTTCTCCCATGG
TACCTTTTCCATGGAGGATAAGGCCGTCACTGCTGCCGCTGCTGCCAACA
CCATCAGCGCCACTGCTCCTGGTGGTCCAAAAGCAGGAGGAGGGGGAGGG
AGCGGGGGATACGATACAAACTCCTTGCTCCCTCTCAACCACCGCCGCCG
CACGTTCATGGGCTTGGCGGGCTCGGTCGTAACGAGGGGCAGAGGGAGGG
GGCTGGTCGTGTCCCTGCCCCCGCATACAGAGAAGGGCCGCCTCACCCGC
CTGCTCAAGCGGGCTGAGTGGGCACGGACGGTGGTGATGGAGCAATTGCA
GGAGGTGGGGGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCCGGGGGGTGCCGTGTCTCCTTTGTCTGCGTCGTCGACC
TTTTTCTTTTCCTTTACTCCCTCCACCCTTTCTCCCACTGCTGCACGCAA
CGGTTGCGAAATAAATAAAGGTCGCGGAATAAATAACGCTTCCGGAATAA
ATAACGGCTCCGCAGCCATAGTCACCAGCAGCAGCAACAGCAGCACCCTC
CCCCTCCCCCCTCCTCTCACCCTCCCCCTCCGCCCCCTTCGCACCCGCCG
ACGTTCACGCCCGAGCGACAGTATCCTCCTGCCCTCCACCATCTCCACCC
TTCGGAGAAGCAGCAGCATCGGCGATGGAGCTCCCAACGACAGCGACTCC
ATGTTTTCTCCCATCTCCCTCCCTACAGATGCTCTCACCGTACCCATCGC
ATCCGTTTCCTCCATCTGCTCCTCCCTCGTGTCCTCCTCCCCTCCGGCCG
CATACCATCACTACCCACCCTCTTCTTCACTTCCCTCCCACCACTTGCCC
CCTCCCCTCCACGACTCATCTTTCGTCTCCGCCGCCGTCAAGCTCCCCCC
CTCCCTTCCCCCCTCCCTTCCCCCCTCCCTCCCCTCTCCCTCCCCCCTTC
CTCCTCCCTCCTCCTCCTCGATCCCTCTCTCACCAGCCTGGAAGACGCTC
TTTTGTGGACCGGCGTGGTCGTATCCTTCCTTTCCCTCTTCCTGTTCCGT
GGTGCAAGCGACCCTCTGGTGTGCATGA

protein sequence of NO02G05950.1

>NO02G05950.1-protein ID=NO02G05950.1-protein|Name=NO02G05950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=734bp
MPVLDHSYWQWLKHALPVAWTLGLSAILLAMCLPDTGPEGSPLLVLMVLG
MGLALYSAAALGWLIISAESKAQEWGHGLTEPELDLLYEAPSLPLREVVD
ILGTDSTTGLSHRHAQARETESSQEARRKSSPSHWAVHTLFQALHEEVWG
SSSWPIAALLSLALVQAAVLSPSSPILPLGLTLVLVVLSLSILRRWRAAW
CLRMCTRGDTGALPALGPVTVVRQGEVMQLPVERVVVGDLLLLSPGQELC
ADVRLVEVEAGPTRRINLEMDESVLDELRLRLLALGMTVEGGPVAGGRTG
LLSPGRGMGEEAQQQEQEQQEQQEQWKPQRQGMFSFTDEEVRMHGLPGGK
PTAPRPQGSPPPHTGLHHHVSFSHGTFSMEDKAVTAAAAANTISATAPGG
PKAGGGGGSGGYDTNSLLPLNHRRRTFMGLAGSVVTRGRGRGLVVSLPPH
TEKGRLTRLLKRAEWARTVVMEQLQEVGVQQQQQQQQQQQQQQQQPGGAV
SPLSASSTFFFSFTPSTLSPTAARNGCEINKGRGINNASGINNGSAAIVT
SSSNSSTLPLPPPLTLPLRPLRTRRRSRPSDSILLPSTISTLRRSSSIGD
GAPNDSDSMFSPISLPTDALTVPIASVSSICSSLVSSSPPAAYHHYPPSS
SLPSHHLPPPLHDSSFVSAAVKLPPSLPPSLPPSLPSPSPLPPPSSSSIP
LSPAWKTLFCGPAWSYPSFPSSCSVVQATLWCA*

mRNA from alignment at chr2:1586092..1588419+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G05950.1 ID=NO02G05950.1|Name=NO02G05950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2328bp|location=Sequence derived from alignment at chr2:1586092..1588419+ (Nannochloropsis oceanica)
ACAGAGAGAAAAGCACAAAGATACCACGCTAGGTCAGCAATCGCAGCTAC
GACTATCACCCTGTCAACCAGCAGCCACACCACACCGATCACCTCTGCAC
GCACACAAACAGGAGGGTCTCACGCCATGCCGGTGCTGGACCACTCCTAT
TGGCAATGGCTGAAGCATGCGTTGCCAGTTGCGTGGACTCTTGGGCTCAG
TGCCATTCTTCTTGCAATGTGCCTTCCGGACACCGGTCCCGAGGGCTCGC
CTTTGCTCGTCCTTATGGTGTTGGGCATGGGTCTCGCTCTGTATAGCGCG
GCGGCCTTAGGCTGGCTAATCATCTCTGCAGAAAGCAAGGCGCAAGAGTG
GGGACATGGCTTGACGGAACCGGAACTCGACCTGTTGTACGAGGCGCCTT
CTTTACCTCTAAGGGAAGTGGTGGACATTCTCGGAACAGACTCGACCACT
GGCCTCAGCCACCGTCACGCCCAAGCCCGAGAAACGGAGTCGTCGCAAGA
GGCACGTCGCAAGTCTTCCCCATCACATTGGGCCGTCCATACCCTCTTTC
AGGCATTGCATGAAGAAGTCTGGGGTTCTTCCTCCTGGCCCATCGCCGCC
CTCCTCTCCCTGGCCCTTGTGCAAGCTGCGGTCTTGTCACCTTCTTCGCC
TATCCTCCCCTTGGGACTCACCCTCGTGCTCGTCGTCCTCTCGCTCTCCA
TCCTCCGGCGCTGGCGGGCAGCATGGTGTTTGCGCATGTGCACCCGGGGC
GACACAGGGGCCTTGCCTGCGTTGGGACCGGTGACGGTGGTGCGGCAAGG
GGAAGTGATGCAACTGCCGGTGGAGAGGGTAGTGGTGGGTGACTTATTGC
TTCTCTCCCCGGGCCAGGAATTGTGCGCGGATGTGCGGCTGGTGGAGGTG
GAGGCAGGACCGACGAGGAGGATCAACCTAGAGATGGACGAAAGCGTGTT
GGATGAGCTGAGGCTGAGGCTTTTGGCGTTGGGGATGACGGTGGAGGGAG
GGCCGGTGGCGGGAGGGAGGACCGGGCTGCTGTCCCCTGGCAGGGGCATG
GGAGAAGAGGCGCAACAGCAGGAGCAGGAGCAGCAAGAGCAGCAGGAGCA
GTGGAAGCCGCAGCGACAGGGAATGTTTTCCTTTACTGACGAAGAGGTGC
GTATGCACGGATTGCCTGGTGGCAAACCAACGGCGCCGCGGCCGCAAGGC
TCTCCTCCACCTCATACGGGCCTGCACCATCATGTCTCCTTCTCCCATGG
TACCTTTTCCATGGAGGATAAGGCCGTCACTGCTGCCGCTGCTGCCAACA
CCATCAGCGCCACTGCTCCTGGTGGTCCAAAAGCAGGAGGAGGGGGAGGG
AGCGGGGGATACGATACAAACTCCTTGCTCCCTCTCAACCACCGCCGCCG
CACGTTCATGGGCTTGGCGGGCTCGGTCGTAACGAGGGGCAGAGGGAGGG
GGCTGGTCGTGTCCCTGCCCCCGCATACAGAGAAGGGCCGCCTCACCCGC
CTGCTCAAGCGGGCTGAGTGGGCACGGACGGTGGTGATGGAGCAATTGCA
GGAGGTGGGGGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCCGGGGGGTGCCGTGTCTCCTTTGTCTGCGTCGTCGACC
TTTTTCTTTTCCTTTACTCCCTCCACCCTTTCTCCCACTGCTGCACGCAA
CGGTTGCGAAATAAATAAAGGTCGCGGAATAAATAACGCTTCCGGAATAA
ATAACGGCTCCGCAGCCATAGTCACCAGCAGCAGCAACAGCAGCACCCTC
CCCCTCCCCCCTCCTCTCACCCTCCCCCTCCGCCCCCTTCGCACCCGCCG
ACGTTCACGCCCGAGCGACAGTATCCTCCTGCCCTCCACCATCTCCACCC
TTCGGAGAAGCAGCAGCATCGGCGATGGAGCTCCCAACGACAGCGACTCC
ATGTTTTCTCCCATCTCCCTCCCTACAGATGCTCTCACCGTACCCATCGC
ATCCGTTTCCTCCATCTGCTCCTCCCTCGTGTCCTCCTCCCCTCCGGCCG
CATACCATCACTACCCACCCTCTTCTTCACTTCCCTCCCACCACTTGCCC
CCTCCCCTCCACGACTCATCTTTCGTCTCCGCCGCCGTCAAGCTCCCCCC
CTCCCTTCCCCCCTCCCTTCCCCCCTCCCTCCCCTCTCCCTCCCCCCTTC
CTCCTCCCTCCTCCTCCTCGATCCCTCTCTCACCAGCCTGGAAGACGCTC
TTTTGTGGACCGGCGTGGTCGTATCCTTCCTTTCCCTCTTCCTGTTCCGT
GGTGCAAGCGACCCTCTGGTGTGCATGA

Coding sequence (CDS) from alignment at chr2:1586092..1588419+

>NO02G05950.1 ID=NO02G05950.1|Name=NO02G05950.1|organism=Nannochloropsis oceanica|type=CDS|length=2202bp|location=Sequence derived from alignment at chr2:1586092..1588419+ (Nannochloropsis oceanica)
ATGCCGGTGCTGGACCACTCCTATTGGCAATGGCTGAAGCATGCGTTGCC
AGTTGCGTGGACTCTTGGGCTCAGTGCCATTCTTCTTGCAATGTGCCTTC
CGGACACCGGTCCCGAGGGCTCGCCTTTGCTCGTCCTTATGGTGTTGGGC
ATGGGTCTCGCTCTGTATAGCGCGGCGGCCTTAGGCTGGCTAATCATCTC
TGCAGAAAGCAAGGCGCAAGAGTGGGGACATGGCTTGACGGAACCGGAAC
TCGACCTGTTGTACGAGGCGCCTTCTTTACCTCTAAGGGAAGTGGTGGAC
ATTCTCGGAACAGACTCGACCACTGGCCTCAGCCACCGTCACGCCCAAGC
CCGAGAAACGGAGTCGTCGCAAGAGGCACGTCGCAAGTCTTCCCCATCAC
ATTGGGCCGTCCATACCCTCTTTCAGGCATTGCATGAAGAAGTCTGGGGT
TCTTCCTCCTGGCCCATCGCCGCCCTCCTCTCCCTGGCCCTTGTGCAAGC
TGCGGTCTTGTCACCTTCTTCGCCTATCCTCCCCTTGGGACTCACCCTCG
TGCTCGTCGTCCTCTCGCTCTCCATCCTCCGGCGCTGGCGGGCAGCATGG
TGTTTGCGCATGTGCACCCGGGGCGACACAGGGGCCTTGCCTGCGTTGGG
ACCGGTGACGGTGGTGCGGCAAGGGGAAGTGATGCAACTGCCGGTGGAGA
GGGTAGTGGTGGGTGACTTATTGCTTCTCTCCCCGGGCCAGGAATTGTGC
GCGGATGTGCGGCTGGTGGAGGTGGAGGCAGGACCGACGAGGAGGATCAA
CCTAGAGATGGACGAAAGCGTGTTGGATGAGCTGAGGCTGAGGCTTTTGG
CGTTGGGGATGACGGTGGAGGGAGGGCCGGTGGCGGGAGGGAGGACCGGG
CTGCTGTCCCCTGGCAGGGGCATGGGAGAAGAGGCGCAACAGCAGGAGCA
GGAGCAGCAAGAGCAGCAGGAGCAGTGGAAGCCGCAGCGACAGGGAATGT
TTTCCTTTACTGACGAAGAGGTGCGTATGCACGGATTGCCTGGTGGCAAA
CCAACGGCGCCGCGGCCGCAAGGCTCTCCTCCACCTCATACGGGCCTGCA
CCATCATGTCTCCTTCTCCCATGGTACCTTTTCCATGGAGGATAAGGCCG
TCACTGCTGCCGCTGCTGCCAACACCATCAGCGCCACTGCTCCTGGTGGT
CCAAAAGCAGGAGGAGGGGGAGGGAGCGGGGGATACGATACAAACTCCTT
GCTCCCTCTCAACCACCGCCGCCGCACGTTCATGGGCTTGGCGGGCTCGG
TCGTAACGAGGGGCAGAGGGAGGGGGCTGGTCGTGTCCCTGCCCCCGCAT
ACAGAGAAGGGCCGCCTCACCCGCCTGCTCAAGCGGGCTGAGTGGGCACG
GACGGTGGTGATGGAGCAATTGCAGGAGGTGGGGGTGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGGGGGGTGCCGTG
TCTCCTTTGTCTGCGTCGTCGACCTTTTTCTTTTCCTTTACTCCCTCCAC
CCTTTCTCCCACTGCTGCACGCAACGGTTGCGAAATAAATAAAGGTCGCG
GAATAAATAACGCTTCCGGAATAAATAACGGCTCCGCAGCCATAGTCACC
AGCAGCAGCAACAGCAGCACCCTCCCCCTCCCCCCTCCTCTCACCCTCCC
CCTCCGCCCCCTTCGCACCCGCCGACGTTCACGCCCGAGCGACAGTATCC
TCCTGCCCTCCACCATCTCCACCCTTCGGAGAAGCAGCAGCATCGGCGAT
GGAGCTCCCAACGACAGCGACTCCATGTTTTCTCCCATCTCCCTCCCTAC
AGATGCTCTCACCGTACCCATCGCATCCGTTTCCTCCATCTGCTCCTCCC
TCGTGTCCTCCTCCCCTCCGGCCGCATACCATCACTACCCACCCTCTTCT
TCACTTCCCTCCCACCACTTGCCCCCTCCCCTCCACGACTCATCTTTCGT
CTCCGCCGCCGTCAAGCTCCCCCCCTCCCTTCCCCCCTCCCTTCCCCCCT
CCCTCCCCTCTCCCTCCCCCCTTCCTCCTCCCTCCTCCTCCTCGATCCCT
CTCTCACCAGCCTGGAAGACGCTCTTTTGTGGACCGGCGTGGTCGTATCC
TTCCTTTCCCTCTTCCTGTTCCGTGGTGCAAGCGACCCTCTGGTGTGCAT
GA

Synonyms

Publications