NO02G05870.1, NO02G05870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05870.1
Unique NameNO02G05870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1419
Alignment locationchr2:1565999..1567972 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1565999..1567972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05870.1 vs.
Match: XP_005853688.1 (di-n-acetylchitobiase [Nannochloropsis gaditana CCMP526]; EKU22669.1 di-n-acetylchitobiase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 543.9 bits (1400), Expect = 5.000e-151
Identity = 270/432 (62.50%), Postives = 322/432 (74.54%), Query Frame = 0 
Query:   41 CPCENTTLCQPIQGQRAKEVYGFRDGDPNNTKYETYDWDVVSTVAWTPVPQLVCHAHARGARVIMAPPNPLPISASDDATARAIWITNTVNQIQSQFLDGMVFDFEGPLLPSDPMNVNYVLLVNETRAALHAAVPGSQVGVCLAWNPHGVDGRYYDNLNLMKAADLAYIMSYDTRSQILGQCIASANAALPATRWGLEEYLTLGADPQKMILGVPWYGYDYTCVGGGKGRRGGNGTTRHFGERGDETGSPALAMMLEMKREEEEEEEWEEEKQEEEEEEGNEEINPLDVNCPIAMVPFRGVGCSDAAGVQVPYSIIQERLVAGKTATGRMWDAYMQTPFYNYIDEGDGSLHQVHYDDAESLRLKYGVARELGLRGVGPYTFDDLPGVGEGGKEGEEAARGMWEALRAFTDEEEEQGKERKGER-KRGLRKGG 472
            CPC N TLCQPIQGQRAKEV+GFR+   N++++E YDW+VV+TVAW P PQL+C AHA GARV+MA P PLPI A DDATARA+WI  TV +IQ+QFLDG+VFDFE PLLP+DP N  YV LV ETRAALHA +PGSQV VCLAW+PHGVDGRYYDN+ L++AADL YIM YDTRSQ++ QC+ASANAALPA  WGL EY+TLGADPQK++LGVPWYGYDY C+  GK    G+G     GERG E G+                    E   + E E+G   ++P  V C I +VPFRGVGCSDAAG QVPYS IQ RL AG+T+TGR WD YMQTPFYNY+D GDGS+HQVHYDD+ESLR+KY +AR+LGLRGVGPYTFDD+   GEGG+EG +A   MW  LR + + +   G+   G + K G+ + G
Sbjct:   37 CPCSNITLCQPIQGQRAKEVFGFRNRGSNDSRFEGYDWNVVTTVAWNPSPQLMCVAHAHGARVVMAAPEPLPILAGDDATARAVWIATTVTEIQTQFLDGIVFDFEAPLLPTDPANSKYVSLVAETRAALHARIPGSQVSVCLAWSPHGVDGRYYDNIGLIEAADLGYIMGYDTRSQVMAQCVASANAALPALAWGLREYMTLGADPQKLVLGVPWYGYDYRCIPQGKQGEDGSGR----GERGREGGA--------------------EGGGQGEGEDG--RVDPTTVTCAIELVPFRGVGCSDAAGKQVPYSTIQARLTAGETSTGRRWDGYMQTPFYNYVDLGDGSVHQVHYDDSESLRVKYDLARQLGLRGVGPYTFDDVWEEGEGGREGADA---MWAVLRMYVEGDTATGEAEIGRKWKEGVDEVG 439
The following BLAST results are available for this feature:
BLAST of NO02G05870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853688.15.000e-15162.50di-n-acetylchitobiase [Nannochloropsis gaditana CC... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05870NO02G05870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05870.1NO02G05870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05870.1.cds1NO02G05870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05870.1.cds2NO02G05870.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05870.1 ID=NO02G05870.1|Name=NO02G05870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1419bp
ATGGCTACAAACCATCCGCGGCGGCACTACCGTCGCCCGCTGCTTTTCCA
CCTGTCTCTTCAATTCGCCCTTGCCTTTGTTACTGCCGCGGCCGCAGCCT
CCCCTGGTAGCCCTTCCCCCTGTCCGTGCGAGAACACCACGCTTTGCCAG
CCTATCCAAGGCCAGCGGGCCAAGGAAGTCTACGGCTTTCGGGACGGAGA
CCCCAACAACACCAAGTACGAGACTTACGACTGGGACGTAGTCAGTACCG
TGGCCTGGACACCGGTGCCTCAATTGGTCTGCCATGCCCACGCTCGGGGT
GCGCGCGTGATCATGGCCCCCCCAAACCCCCTTCCCATCTCCGCCTCCGA
TGACGCCACCGCCCGGGCCATCTGGATCACCAACACCGTCAATCAAATCC
AATCCCAGTTTCTCGACGGCATGGTTTTTGATTTTGAGGGACCCCTGCTG
CCTAGTGACCCGATGAATGTTAATTACGTCTTGCTGGTGAATGAGACAAG
AGCGGCGTTACACGCGGCCGTGCCAGGCTCTCAGGTGGGCGTGTGTTTGG
CTTGGAACCCCCACGGCGTCGATGGACGGTACTACGACAATCTAAACCTG
ATGAAGGCGGCCGACTTGGCCTACATCATGAGCTATGACACACGGTCACA
AATTCTCGGTCAGTGCATCGCAAGTGCCAACGCCGCCTTGCCGGCAACGA
GGTGGGGACTTGAAGAGTACCTTACCCTTGGGGCAGATCCGCAAAAAATG
ATTCTGGGCGTTCCGTGGTACGGATATGATTATACGTGTGTGGGAGGAGG
GAAAGGAAGAAGGGGGGGGAATGGAACGACGCGTCATTTTGGCGAGCGTG
GGGATGAAACTGGGTCCCCGGCTCTGGCCATGATGTTGGAAATGAAGAGG
GAGGAGGAGGAGGAGGAGGAGTGGGAGGAGGAGAAGCAGGAGGAGGAGGA
GGAGGAGGGGAATGAAGAGATTAATCCTCTGGATGTAAACTGCCCGATAG
CCATGGTGCCCTTCCGAGGTGTGGGCTGCTCTGATGCCGCCGGTGTCCAA
GTACCCTATTCCATCATACAGGAGCGGTTGGTCGCGGGTAAGACGGCCAC
GGGTCGGATGTGGGACGCATACATGCAAACGCCTTTCTACAACTATATAG
ACGAAGGGGATGGGAGCCTGCACCAGGTGCATTACGATGACGCGGAATCC
CTGCGGTTGAAGTATGGCGTGGCGCGAGAGCTGGGATTGCGGGGAGTGGG
ACCCTATACGTTTGATGACTTACCCGGGGTTGGAGAGGGAGGGAAGGAGG
GGGAGGAGGCGGCAAGGGGAATGTGGGAGGCATTGAGGGCTTTCACAGAC
GAGGAAGAAGAGCAGGGGAAGGAGCGGAAGGGGGAGAGGAAGAGGGGGTT
GAGGAAGGGAGGAGGGTGA
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protein sequence of NO02G05870.1

>NO02G05870.1-protein ID=NO02G05870.1-protein|Name=NO02G05870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MATNHPRRHYRRPLLFHLSLQFALAFVTAAAAASPGSPSPCPCENTTLCQ
PIQGQRAKEVYGFRDGDPNNTKYETYDWDVVSTVAWTPVPQLVCHAHARG
ARVIMAPPNPLPISASDDATARAIWITNTVNQIQSQFLDGMVFDFEGPLL
PSDPMNVNYVLLVNETRAALHAAVPGSQVGVCLAWNPHGVDGRYYDNLNL
MKAADLAYIMSYDTRSQILGQCIASANAALPATRWGLEEYLTLGADPQKM
ILGVPWYGYDYTCVGGGKGRRGGNGTTRHFGERGDETGSPALAMMLEMKR
EEEEEEEWEEEKQEEEEEEGNEEINPLDVNCPIAMVPFRGVGCSDAAGVQ
VPYSIIQERLVAGKTATGRMWDAYMQTPFYNYIDEGDGSLHQVHYDDAES
LRLKYGVARELGLRGVGPYTFDDLPGVGEGGKEGEEAARGMWEALRAFTD
EEEEQGKERKGERKRGLRKGGG*
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mRNA from alignment at chr2:1565999..1567972+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05870.1 ID=NO02G05870.1|Name=NO02G05870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1974bp|location=Sequence derived from alignment at chr2:1565999..1567972+ (Nannochloropsis oceanica)
ATGGCTACAAACCATCCGCGGCGGCACTACCGTCGCCCGCTGCTTTTCCA
CCTGTCTCTTCAATTCGCCCTTGCCTTTGTTACTGCCGCGGCCGCAGCCT
CCCCTGGTAGCCCTTCCCCCTGTCCGTGCGAGAACACCACGCTTTGCCAG
CCTATCCAAGGCCAGCGGGCCAAGGAAGTCTACGGCTTTCGGGACGGAGA
CCCCAACAACACCAAGTACGAGACTTACGACTGGGACGTAGTCAGTACCG
TGGCCTGGACACCGGTGCCTCAATTGGTCTGCCATGCCCACGCTCGGGGT
GCGCGCGTGGTAAGTCAGGGTGTTGACGTGCCGTCTTGTTATAATTCAAA
AATCTCACGGGGGGACTTTGTGTGGTTTTGGGGGACGGGGAGACAGGGGT
TTCTGCTTGTAATTGAGATGCCCACCCTTATTCTCGGCGACTGGTACAAG
GGGCCCCTGGTAGGCTGTGGTATTGCGTCGAGTTTGTGGACGAGACGGAA
AGAAGAGTGCTGCGAGGGGTTGCTTGGTTGTCGTCCGCACCCCGAGGAAA
ACGTGACCGGTATATGTAGCCCTTTTTCTGTGTAACCTGAATACCACACG
AGCCTTGGTACAAAATGGTCAATGAGCTTAGTGTTACGATTGCGAGTACT
TTCGTGGTTTTGATTGTTTGTTGCCCTCATTGTCAAACATCACGGAGCCC
TTGGATTGGTGCGGACAGAGAAGCGAGTGCATGATGAATCAGAATCAATA
GGGTGCAACCCTCACCGCTCATCACCGCAGAAGAGCGTGTCACCACCTCG
TTCTTTCTTCCACCTCACCCTCTGTCTCCCTCCTTCCCTCCTTACCCGCT
ATACCCCCATATAGATCATGGCCCCCCCAAACCCCCTTCCCATCTCCGCC
TCCGATGACGCCACCGCCCGGGCCATCTGGATCACCAACACCGTCAATCA
AATCCAATCCCAGTTTCTCGACGGCATGGTTTTTGATTTTGAGGGACCCC
TGCTGCCTAGTGACCCGATGAATGTTAATTACGTCTTGCTGGTGAATGAG
ACAAGAGCGGCGTTACACGCGGCCGTGCCAGGCTCTCAGGTGGGCGTGTG
TTTGGCTTGGAACCCCCACGGCGTCGATGGACGGTACTACGACAATCTAA
ACCTGATGAAGGCGGCCGACTTGGCCTACATCATGAGCTATGACACACGG
TCACAAATTCTCGGTCAGTGCATCGCAAGTGCCAACGCCGCCTTGCCGGC
AACGAGGTGGGGACTTGAAGAGTACCTTACCCTTGGGGCAGATCCGCAAA
AAATGATTCTGGGCGTTCCGTGGTACGGATATGATTATACGTGTGTGGGA
GGAGGGAAAGGAAGAAGGGGGGGGAATGGAACGACGCGTCATTTTGGCGA
GCGTGGGGATGAAACTGGGTCCCCGGCTCTGGCCATGATGTTGGAAATGA
AGAGGGAGGAGGAGGAGGAGGAGGAGTGGGAGGAGGAGAAGCAGGAGGAG
GAGGAGGAGGAGGGGAATGAAGAGATTAATCCTCTGGATGTAAACTGCCC
GATAGCCATGGTGCCCTTCCGAGGTGTGGGCTGCTCTGATGCCGCCGGTG
TCCAAGTACCCTATTCCATCATACAGGAGCGGTTGGTCGCGGGTAAGACG
GCCACGGGTCGGATGTGGGACGCATACATGCAAACGCCTTTCTACAACTA
TATAGACGAAGGGGATGGGAGCCTGCACCAGGTGCATTACGATGACGCGG
AATCCCTGCGGTTGAAGTATGGCGTGGCGCGAGAGCTGGGATTGCGGGGA
GTGGGACCCTATACGTTTGATGACTTACCCGGGGTTGGAGAGGGAGGGAA
GGAGGGGGAGGAGGCGGCAAGGGGAATGTGGGAGGCATTGAGGGCTTTCA
CAGACGAGGAAGAAGAGCAGGGGAAGGAGCGGAAGGGGGAGAGGAAGAGG
GGGTTGAGGAAGGGAGGAGGGTGA
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Coding sequence (CDS) from alignment at chr2:1565999..1567972+

>NO02G05870.1 ID=NO02G05870.1|Name=NO02G05870.1|organism=Nannochloropsis oceanica|type=CDS|length=1419bp|location=Sequence derived from alignment at chr2:1565999..1567972+ (Nannochloropsis oceanica)
ATGGCTACAAACCATCCGCGGCGGCACTACCGTCGCCCGCTGCTTTTCCA
CCTGTCTCTTCAATTCGCCCTTGCCTTTGTTACTGCCGCGGCCGCAGCCT
CCCCTGGTAGCCCTTCCCCCTGTCCGTGCGAGAACACCACGCTTTGCCAG
CCTATCCAAGGCCAGCGGGCCAAGGAAGTCTACGGCTTTCGGGACGGAGA
CCCCAACAACACCAAGTACGAGACTTACGACTGGGACGTAGTCAGTACCG
TGGCCTGGACACCGGTGCCTCAATTGGTCTGCCATGCCCACGCTCGGGGT
GCGCGCGTGATCATGGCCCCCCCAAACCCCCTTCCCATCTCCGCCTCCGA
TGACGCCACCGCCCGGGCCATCTGGATCACCAACACCGTCAATCAAATCC
AATCCCAGTTTCTCGACGGCATGGTTTTTGATTTTGAGGGACCCCTGCTG
CCTAGTGACCCGATGAATGTTAATTACGTCTTGCTGGTGAATGAGACAAG
AGCGGCGTTACACGCGGCCGTGCCAGGCTCTCAGGTGGGCGTGTGTTTGG
CTTGGAACCCCCACGGCGTCGATGGACGGTACTACGACAATCTAAACCTG
ATGAAGGCGGCCGACTTGGCCTACATCATGAGCTATGACACACGGTCACA
AATTCTCGGTCAGTGCATCGCAAGTGCCAACGCCGCCTTGCCGGCAACGA
GGTGGGGACTTGAAGAGTACCTTACCCTTGGGGCAGATCCGCAAAAAATG
ATTCTGGGCGTTCCGTGGTACGGATATGATTATACGTGTGTGGGAGGAGG
GAAAGGAAGAAGGGGGGGGAATGGAACGACGCGTCATTTTGGCGAGCGTG
GGGATGAAACTGGGTCCCCGGCTCTGGCCATGATGTTGGAAATGAAGAGG
GAGGAGGAGGAGGAGGAGGAGTGGGAGGAGGAGAAGCAGGAGGAGGAGGA
GGAGGAGGGGAATGAAGAGATTAATCCTCTGGATGTAAACTGCCCGATAG
CCATGGTGCCCTTCCGAGGTGTGGGCTGCTCTGATGCCGCCGGTGTCCAA
GTACCCTATTCCATCATACAGGAGCGGTTGGTCGCGGGTAAGACGGCCAC
GGGTCGGATGTGGGACGCATACATGCAAACGCCTTTCTACAACTATATAG
ACGAAGGGGATGGGAGCCTGCACCAGGTGCATTACGATGACGCGGAATCC
CTGCGGTTGAAGTATGGCGTGGCGCGAGAGCTGGGATTGCGGGGAGTGGG
ACCCTATACGTTTGATGACTTACCCGGGGTTGGAGAGGGAGGGAAGGAGG
GGGAGGAGGCGGCAAGGGGAATGTGGGAGGCATTGAGGGCTTTCACAGAC
GAGGAAGAAGAGCAGGGGAAGGAGCGGAAGGGGGAGAGGAAGAGGGGGTT
GAGGAAGGGAGGAGGGTGA
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Synonyms
Publications