|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:1554898..1558228 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G05820.1 vs.
Match: EWM30106.1 (erythromycin esterase [Nannochloropsis gaditana]) HSP 1 Score: 785.8 bits (2028), Expect = 7.100e-224 Identity = 360/449 (80.18%), Postives = 415/449 (92.43%), Query Frame = 0
Query: 1 MDYARAMTDTLEHSKLPLRNERDLDPLLQSIGDKRFVFLGEASHGTHEFYTWRAHITKRLIEEKGFNFVAVEGDWPDCYELNRYIKGFEKEAKHPSDIMKTYFKRWPVWMWGNWEVAALAGWMRQHNLKKAGNMKERVGFYGLDVYSLLESLESIVSYMRDVDGEESIKTAERALACFERVAVMGKEDVGQAYGMAATLTPYSCRDEVVELLVRVRKEAAKLAETKPQDDEMAENSLSAEINTKVVLDAEKYYRIMVDGSDDSWNARDSHMHDTLQRLANYYSPNSKAIIWAHNTHNGDARATDMGRAGMHNIGQLARETWGKDQVHLVGFGTYQGSVMAGERWGAEMKVMPLPSGRPGTWEDVCHRAGKGQNMILLPNVLQQPLFEKRIGHRAVGVVYNPQRDSVQYVPSVLRNRYDAFVFVDTTQAVHALKIKANPTEMPETYPWGV 450
M+YA+AMT+TLE KLPLRN+RDLDPLL+SIGDKRFVFLGE+SHGTHEFYTWRAHITKRLIEEKGFNFV VEGDWPDCYELNRYIKGF+ AKHPSD+MK YFKRWPVWMWGNWEVAAL GWMR+ N+K+ +ERVGFYGLDVYSL+ESLE+IV +MR VDG+ESIK+AERALACFERVA MGKEDVGQAYGMAA LTPYSCR+EVV+LLV+VR+EAAKL+E+ P D+E EN+LSAE+NTKVVLDAEKYYRIMVDGSDDSWNARD+HMH+TL+RL+++Y P SKAIIWAHNTHNGDARATDM GMHNIGQLARETWGK+QVHLVG GTYQGSVMAG+RWGA+M+VMPLP G PG+WE +CH AGKGQ+M+++P VL+QPLFEKR+GHRAVGVVYNP RD +QYVPSV++ RYDAFVF+DTT+A+H+LK++A+PTE+PETYPWGV
Sbjct: 85 MEYAKAMTETLEQHKLPLRNDRDLDPLLESIGDKRFVFLGESSHGTHEFYTWRAHITKRLIEEKGFNFVGVEGDWPDCYELNRYIKGFKDSAKHPSDVMKAYFKRWPVWMWGNWEVAALTGWMREFNMKRPA--QERVGFYGLDVYSLMESLEAIVKFMRSVDGDESIKSAERALACFERVATMGKEDVGQAYGMAAALTPYSCRNEVVKLLVKVREEAAKLSES-PHDEEANENALSAELNTKVVLDAEKYYRIMVDGSDDSWNARDTHMHETLRRLSHFYGPKSKAIIWAHNTHNGDARATDMAMGGMHNIGQLARETWGKEQVHLVGLGTYQGSVMAGKRWGADMEVMPLPRGVPGSWEHICHTAGKGQDMLVVPEVLRQPLFEKRVGHRAVGVVYNPSRDRMQYVPSVMKARYDAFVFLDTTRALHSLKLQADPTEVPETYPWGV 530
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G05820.1 ID=NO02G05820.1|Name=NO02G05820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2976bp ACATTCAGCTTCGACAATTGTTGTACCTCCCCACATGTTGGCGGTTATTC TGAGGAACGTTCTTTCCTTCGTTTCTTCGCGAGCAATGGCAATTACACAA ACATGCCCCCTGTGGCTCTTTTGTTATGCTTTATACTCATAGATTATGCG CTCCACAGTGTTTTTATGCACTGTGTTGATCCAGACAGAGGCACACAAGT GAAGTCACCGCTTTCCGTGTGTGTGCCCCTGGCAAACAACAACATATGTT CCTGTCGACTTCCGCCTCCGCCATTAGAAAGTAGCCAGTCATTCTTTTTT TGTGCGACGTGAACTTACATTCTCCATTTTGGGACCACCACAATTTAGAA AAGAGTCTAAGCAAAATTACTTTCTCCTTTACGGCGTCCACCTTGCTTTG TCGGCGCCGCCGCTTCGGCACCAGCAACATCATTCTGTCGTTGGTTTATC TGGCCTCTTCCGCCACTCGCATCACCGCCGCTGCCACCGTCCCGGTCTTC CTGCCCACCACTTACAACCACGCTCTCCAACCTTTTGCCACTAAAGCTGC CTCCCGCCTGGTCTCACAAGAAACTTTTGCCACCATCCCTGAGACCTTGC CAGACTTCGACAAAACAATGGATTATGCCCGTGCTATGACCGACACGCTG GAGCATTCCAAGCTGCCCCTCCGCAATGAACGTGACTTAGATCCTCTGCT TCAATCGATTGGTGACAAGCGCTTCGTTTTCTTGGGCGAGGCTTCTCATG GTACGCACGAATTCTACACCTGGCGAGCGCACATCACCAAGCGTCTCATC GAGGAGAAAGGCTTCAACTTTGTCGCTGTCGAAGGGGACTGGCCCGATTG CTACGAACTTAATCGTTATATTAAGGGCTTTGAGAAAGAAGCTAAACACC CTTCCGACATCATGAAGACTTATTTCAAGCGGTGGCCTGTATGGATGTGG GGCAATTGGGAAGTCGCTGCGCTGGCTGGGTGGATGCGGCAGCATAACTT GAAAAAGGCGGGAAATATGAAAGAACGCGTGGGATTTTATGGGTTGGATG TGTACTCGTTGCTGGAAAGTTTGGAGTCGATTGTGAGCTACATGCGTGAT GTGGACGGAGAAGAGTCGATTAAGACTGCGGAGCGGGCCTTGGCGTGTTT CGAGCGGGTGGCGGTAATGGGAAAGGAAGATGTGGGGCAGGCCTATGGAA TGGCCGCGACTCTCACTCCGTACTCATGCCGCGACGAGGTCGTCGAATTG CTTGTGAGGGTGAGAAAGGAAGCCGCCAAGCTTGCCGAGACTAAGCCCCA GGACGACGAGATGGCGGAGAATTCGTTGAGTGCAGAAATCAATACGAAGG TGGTGCTTGATGCTGAAAAATATTACCGAATCATGGTAGATGGGTCAGAC GATTCGTGGAATGCCCGCGACAGTCACATGCACGACACTCTTCAACGCCT CGCAAATTATTACTCGCCCAACAGCAAGGCTATCATTTGGGCACATAATA CTCATAATGGAGATGCCCGCGCCACGGATATGGGAAGGGCTGGAATGCAT AACATTGGGCAACTTGCCCGAGAGACGTGGGGAAAGGATCAGGTGCATTT GGTAGGATTTGGGACGTACCAGGGCTCGGTCATGGCCGGGGAGCGTTGGG GTGCAGAGATGAAAGTCATGCCTTTGCCGTCTGGTCGCCCTGGAACGTGG GAGGACGTGTGCCATCGGGCGGGGAAAGGTCAGAACATGATTTTGTTGCC CAACGTCCTGCAGCAGCCCTTGTTTGAGAAGCGTATTGGGCATCGGGCTG TAGGGGTGGTGTATAACCCTCAGCGTGACTCCGTCCAATACGTGCCGTCC GTACTTAGGAATCGCTATGACGCCTTTGTGTTTGTCGATACCACTCAGGC TGTTCACGCTCTCAAGATCAAAGCCAACCCCACTGAAATGCCCGAGACGT ACCCCTGGGGAGTGTAAGAGCAAGGGAAATGGGTCATTTAAGGGAGAGGT GGCCGGGGTCAGTAGCCGACATACATGTGGATGGGTAAATGGTGGAAAGC ATTGCTAATTTCATCTTTGAGACTAGCGCTTTGGATTACCAAAAAGGAGG AACAAAGAGAAGTGGTAGCGAAAGACACGGTGGGTGGATGAGACAGAAGC GCACCGAAAAATTGCATCATGGCTGAAGAAGGCACATTGTCAGCAACTAA ATGTGTAAAAAAGGAGAAAGCGTCCGATAGCGAGCAGGGCCATAGATGTC CAGAGATAATCAATACGCGTGCACGATGAGCAAGACATTTGAAAAGCAGT ATTTATCCAAGAAGACGTTCTCAAACGAGAAAGTCAATCTAAACCCAACT TGAGGTGGGGCTGTCCCGGTGAACTATTCCTTTCTCATAAAAGGATCAAC CTTCCTTAATGGGGGTTAGGATGTCCCCGTGAGGCAAGGGTTTATGGTAG ACCATGGGGGGCTGCAAGAACAATCGCACACACAAATGCACAAATTGTAA TGCGAAGACAACTTAAAAACACATATTATTCATTTATGAGCCGATAGAAC TTCAGGGGCCCACTTAGTTGCTCCATTGCACAAGTGCAAGTGTAAAAATG TGTCATCCATTCTGCTTGATTATTAGAAAGATGAATATTTTCGAAAGAAT GCTGCTAGCAAGTAAAGGAGCAATATCGGTAAGGGCTATGATGGGTCGAA AGAAAAGGAGAATAACTTTGTAGGGGAATGAGGAGTTTAAGTAAAACGAG GCATTCTCGGTAATGGAATTAATGGCAGTGCCAGGTGCGACCAAGTCAGG CCACGGCCATGGATGGTAGGTCCGACAGAAGAGAAATAGGCAACAGACGT CCCTTGGTTGATCTGCCCCTCTATTTTGCCTTGTATCAAGTAAGAGAAAT CATAGCGATAACGAAAAAAACAATCGGAACACGAAAAGAGGCTTAACTAC TATCCTTAGATTCCTACGTCAACTTT back to topprotein sequence of NO02G05820.1 >NO02G05820.1-protein ID=NO02G05820.1-protein|Name=NO02G05820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp MDYARAMTDTLEHSKLPLRNERDLDPLLQSIGDKRFVFLGEASHGTHEFY TWRAHITKRLIEEKGFNFVAVEGDWPDCYELNRYIKGFEKEAKHPSDIMK TYFKRWPVWMWGNWEVAALAGWMRQHNLKKAGNMKERVGFYGLDVYSLLE SLESIVSYMRDVDGEESIKTAERALACFERVAVMGKEDVGQAYGMAATLT PYSCRDEVVELLVRVRKEAAKLAETKPQDDEMAENSLSAEINTKVVLDAE KYYRIMVDGSDDSWNARDSHMHDTLQRLANYYSPNSKAIIWAHNTHNGDA RATDMGRAGMHNIGQLARETWGKDQVHLVGFGTYQGSVMAGERWGAEMKV MPLPSGRPGTWEDVCHRAGKGQNMILLPNVLQQPLFEKRIGHRAVGVVYN PQRDSVQYVPSVLRNRYDAFVFVDTTQAVHALKIKANPTEMPETYPWGV* back to topmRNA from alignment at chr2:1554898..1558228- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G05820.1 ID=NO02G05820.1|Name=NO02G05820.1|organism=Nannochloropsis oceanica|type=mRNA|length=3331bp|location=Sequence derived from alignment at chr2:1554898..1558228- (Nannochloropsis oceanica) ACATTCAGCTTCGACAATTGTTGTACCTCCCCACATGTTGGCGGTTATTC
TGAGGAACGTTCTTTCCTTCGTTTCTTCGCGAGCAATGGCAATTACACAA
ACATGCCCCCTGTGGCTCTTTTGTTATGCTTTATACTCATAGATTATGCG
CTCCACAGTGTTTTTATGCACTGTGTTGATCCAGACAGAGGCACACAAGT
GAAGTCACCGCTTTCCGTGTGTGTGCCCCTGGCAAACAACAACATATGTT
CCTGTCGACTTCCGCCTCCGCCATTAGAAAGTAGCCAGTCATTCTTTTTT
TGTGCGACGTGAACTTACATTCTCCATTTTGGGACCACCACAATTTAGAA
AAGAGTCTAAGCAAAATTACTTTCTCCTTTACGGCGTCCACCTTGCTTTG
TCGGCGCCGCCGCTTCGGCACCAGCAACATCATTCTGTCGTTGGTTTATC
TGGCCTCTTCCGCCACTCGCATCACCGCCGCTGCCACCGTCCCGGTCTTC
CTGCCCACCACTTACAACCACGCTCTCCAACCTTTTGCCACTAAAGCTGC
CTCCCGCCTGGTCTCACAAGAAACTTTTGCCACCATCCCTGAGACCTTGC
CAGACTTCGACAAAACAATGGATTATGCCCGTGCTATGACCGACACGCTG
GAGCATTCCAAGCTGCCCCTCCGCAATGAACGTGACTTAGATCCTCTGCT
TCAATCGATTGGTGACAAGCGCTTCGTTTTCTTGGGCGAGGCTTCTCATG
GTACGCACGAATTCTACACCTGGCGAGCGCACATCACCAAGCGTCTCATC
GAGGAGAAAGGCTTCAACTTTGTCGCTGTCGAAGGGGACTGGCCCGATTG
CTACGAACTTAATCGTTATATTAAGGGCTTTGAGAAAGAAGCTAAACACC
CTTCCGACATCATGAAGACTTATTTCAAGCGGTGGCCTGTATGGATGTGG
GGCAATTGGGAAGTCGCTGCGCTGGCTGGGTGGATGCGGCAGCATAACTT
GAAAAAGGCGGGAAATATGAAAGAACGCGTGGGATTTTATGGGTTGGATG
TGTACTCGTTGCTGGAAAGTTTGGAGTCGATTGTGAGCTACATGCGTGAT
GTGGACGGAGAAGAGTCGATTAAGACTGCGGAGCGGGCCTTGGCGTGTTT
CGAGCGGGTGGCGGTAATGGGAAAGGAAGATGTGGGGCAGGCCTATGGAA
TGGCCGCGACTCTCACTCCGTACTCATGCCGCGACGAGGTCGTCGAATTG
CTTGTGAGGGTGAGAAAGGAAGCCGCCAAGCTTGCCGAGACTAAGCCCCA
GGACGACGAGATGGCGGAGAATTCGTTGAGTGCAGAAATCAATACGAAGG
TACGTTGTCTTCGGAGGGTCGGACATCTGAGGTGTTAAGGGTTGTGTATG
ATGAGAATGATTGACAGGTGTTTGTTAAAAAGCTTTGATATCATCAATCA
AGAGCCTGAGCTAAGTGATGGCGGCATGTTCCAACCATTCATGCTTTCTC
ATGCCCGCTGTTCCTGAGCTTTTCTGAGTCCACATCGTCTGGATTTACAT
AAACATATCTATGTGACTTTCCTGTCCGAACCGTTTGATTATGGAAATTG
GCCTGTATTTCATTCCCAGTCAAACCTGTTCGTATCTTTCCTACCTTCCA
AAACCACAATTTCTCATACTCTCTTCTCCTCGCCGAAATACTTTTGTCCT
CTAGGTGGTGCTTGATGCTGAAAAATATTACCGAATCATGGTAGATGGGT
CAGACGATTCGTGGAATGCCCGCGACAGTCACATGCACGACACTCTTCAA
CGCCTCGCAAATTATTACTCGCCCAACAGCAAGGCTATCATTTGGGCACA
TAATACTCATAATGGAGATGCCCGCGCCACGGATATGGGAAGGGCTGGAA
TGCATAACATTGGGCAACTTGCCCGAGAGACGTGGGGAAAGGATCAGGTG
CATTTGGTAGGATTTGGGACGTACCAGGGCTCGGTCATGGCCGGGGAGCG
TTGGGGTGCAGAGATGAAAGTCATGCCTTTGCCGTCTGGTCGCCCTGGAA
CGTGGGAGGACGTGTGCCATCGGGCGGGGAAAGGTCAGAACATGATTTTG
TTGCCCAACGTCCTGCAGCAGCCCTTGTTTGAGAAGCGTATTGGGCATCG
GGCTGTAGGGGTGGTGTATAACCCTCAGCGTGACTCCGTCCAATACGTGC
CGTCCGTACTTAGGAATCGCTATGACGCCTTTGTGTTTGTCGATACCACT
CAGGCTGTTCACGCTCTCAAGATCAAAGCCAACCCCACTGAAATGCCCGA
GACGTACCCCTGGGGAGTGTAAGAGCAAGGGAAATGGGTCATTTAAGGGA
GAGGTGGCCGGGGTCAGTAGCCGACATACATGTGGATGGGTAAATGGTGG
AAAGCATTGCTAATTTCATCTTTGAGACTAGCGCTTTGGATTACCAAAAA
GGAGGAACAAAGAGAAGTGGTAGCGAAAGACACGGTGGGTGGATGAGACA
GAAGCGCACCGAAAAATTGCATCATGGCTGAAGAAGGCACATTGTCAGCA
ACTAAATGTGTAAAAAAGGAGAAAGCGTCCGATAGCGAGCAGGGCCATAG
ATGTCCAGAGATAATCAATACGCGTGCACGATGAGCAAGACATTTGAAAA
GCAGTATTTATCCAAGAAGACGTTCTCAAACGAGAAAGTCAATCTAAACC
CAACTTGAGGTGGGGCTGTCCCGGTGAACTATTCCTTTCTCATAAAAGGA
TCAACCTTCCTTAATGGGGGTTAGGATGTCCCCGTGAGGCAAGGGTTTAT
GGTAGACCATGGGGGGCTGCAAGAACAATCGCACACACAAATGCACAAAT
TGTAATGCGAAGACAACTTAAAAACACATATTATTCATTTATGAGCCGAT
AGAACTTCAGGGGCCCACTTAGTTGCTCCATTGCACAAGTGCAAGTGTAA
AAATGTGTCATCCATTCTGCTTGATTATTAGAAAGATGAATATTTTCGAA
AGAATGCTGCTAGCAAGTAAAGGAGCAATATCGGTAAGGGCTATGATGGG
TCGAAAGAAAAGGAGAATAACTTTGTAGGGGAATGAGGAGTTTAAGTAAA
ACGAGGCATTCTCGGTAATGGAATTAATGGCAGTGCCAGGTGCGACCAAG
TCAGGCCACGGCCATGGATGGTAGGTCCGACAGAAGAGAAATAGGCAACA
GACGTCCCTTGGTTGATCTGCCCCTCTATTTTGCCTTGTATCAAGTAAGA
GAAATCATAGCGATAACGAAAAAAACAATCGGAACACGAAAAGAGGCTTA
ACTACTATCCTTAGATTCCTACGTCAACTTT back to topCoding sequence (CDS) from alignment at chr2:1554898..1558228- >NO02G05820.1 ID=NO02G05820.1|Name=NO02G05820.1|organism=Nannochloropsis oceanica|type=CDS|length=1350bp|location=Sequence derived from alignment at chr2:1554898..1558228- (Nannochloropsis oceanica) ATGGATTATGCCCGTGCTATGACCGACACGCTGGAGCATTCCAAGCTGCC CCTCCGCAATGAACGTGACTTAGATCCTCTGCTTCAATCGATTGGTGACA AGCGCTTCGTTTTCTTGGGCGAGGCTTCTCATGGTACGCACGAATTCTAC ACCTGGCGAGCGCACATCACCAAGCGTCTCATCGAGGAGAAAGGCTTCAA CTTTGTCGCTGTCGAAGGGGACTGGCCCGATTGCTACGAACTTAATCGTT ATATTAAGGGCTTTGAGAAAGAAGCTAAACACCCTTCCGACATCATGAAG ACTTATTTCAAGCGGTGGCCTGTATGGATGTGGGGCAATTGGGAAGTCGC TGCGCTGGCTGGGTGGATGCGGCAGCATAACTTGAAAAAGGCGGGAAATA TGAAAGAACGCGTGGGATTTTATGGGTTGGATGTGTACTCGTTGCTGGAA AGTTTGGAGTCGATTGTGAGCTACATGCGTGATGTGGACGGAGAAGAGTC GATTAAGACTGCGGAGCGGGCCTTGGCGTGTTTCGAGCGGGTGGCGGTAA TGGGAAAGGAAGATGTGGGGCAGGCCTATGGAATGGCCGCGACTCTCACT CCGTACTCATGCCGCGACGAGGTCGTCGAATTGCTTGTGAGGGTGAGAAA GGAAGCCGCCAAGCTTGCCGAGACTAAGCCCCAGGACGACGAGATGGCGG AGAATTCGTTGAGTGCAGAAATCAATACGAAGGTGGTGCTTGATGCTGAA AAATATTACCGAATCATGGTAGATGGGTCAGACGATTCGTGGAATGCCCG CGACAGTCACATGCACGACACTCTTCAACGCCTCGCAAATTATTACTCGC CCAACAGCAAGGCTATCATTTGGGCACATAATACTCATAATGGAGATGCC CGCGCCACGGATATGGGAAGGGCTGGAATGCATAACATTGGGCAACTTGC CCGAGAGACGTGGGGAAAGGATCAGGTGCATTTGGTAGGATTTGGGACGT ACCAGGGCTCGGTCATGGCCGGGGAGCGTTGGGGTGCAGAGATGAAAGTC ATGCCTTTGCCGTCTGGTCGCCCTGGAACGTGGGAGGACGTGTGCCATCG GGCGGGGAAAGGTCAGAACATGATTTTGTTGCCCAACGTCCTGCAGCAGC CCTTGTTTGAGAAGCGTATTGGGCATCGGGCTGTAGGGGTGGTGTATAAC CCTCAGCGTGACTCCGTCCAATACGTGCCGTCCGTACTTAGGAATCGCTA TGACGCCTTTGTGTTTGTCGATACCACTCAGGCTGTTCACGCTCTCAAGA TCAAAGCCAACCCCACTGAAATGCCCGAGACGTACCCCTGGGGAGTGTAA back to top
|