NO02G05750.1, NO02G05750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05750.1
Unique NameNO02G05750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2034
Alignment locationchr2:1532921..1535208 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1532921..1535208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05750.1 vs.
Match: EWM30093.1 (spindle assembly abnormal protein 6 [Nannochloropsis gaditana])

HSP 1 Score: 610.5 bits (1573), Expect = 6.200e-171
Identity = 390/690 (56.52%), Postives = 473/690 (68.55%), Query Frame = 0 
Query:    1 MAPPSAAFTSFSSSMQGNRGDSCIRGSSGINAAFDRANPLFEATLRVEVCRADSDAGQSH-QEGSSEVLPLTLRVLTGTALPFDAPSQRY--CGRTERVLRIEITQKDDDDKNDEGAGGRGDNNASAYFLYSLDVSETDYPALKRDQSLLVDFTTFPNHFIDLVEGCRVMPSSSSPSSLPPSST-----AELRPKYLARLTIPSSSSSSSSTTTTSPSSGTFAIVEATRFKELTHLSLSFCPPTDHALKVYLATRLRHLTLLHADSTHAHLSISSLLSHEQARAHSLSLQLSQLQHQKDEEISSLRSSHTHARETALAAHSHEKQSLLHKHEQQMASLKKRLEETERRRAVLAEARHGQEASFREMARQVEDLTSRLTRKEEEVVLRLGEKEAMDGTLKRVERERDGALLKVEGLLQQLNGQGEVLGKTKALQAAAEGGRKRMEEALELYKNNALTLQEKLEMSVGEIQKGNAIIHKLQGDVQALRGKLKTKNEVLRKQEALLVEGQRGQDAGQHRLSMSVQENGRLTQELREMKVALEEAKRENESNQQVITWLNKEINDLQLGRGSSGLMYAMTGG--GGTGGKGRQGLNRPSTSSSTAASVATFIPSYQHTTPTKGKGGQSVHVTPSSVAVPVSMVKKQQHQQQEEQYKEPMQHEK----VNMSASSLESASSTHYLDALGLSDPYQ 677
            MAP S      S  +  +RG    R S   N  F+RANPLFE TL +EVCR      Q+  QE S E++PLTLRVLTGTA      S +     R+E VLRIEITQ   D+  +E AG   ++ A++YFLY+LDVSE++YP LKRDQSLLVDF  FP+ FI LV  CRV  SS++ S    +++     AE+ P Y ARLT+ +SS+ S+S +    SS  FAIVEAT FKEL+HLSL+FCPPTDH LK +LATRL+HLT LHA +   H S+S +LS EQAR  SL+  LS L+ +K+EE  +L+ +H  A  TALA HS EK  L+ +HE QM +L+KR EETERRR  L+EARH  EA  RE+ R+VE LT RL   ++     + EK+ ++ TL+  E+  D A L+ EGLLQ+L GQ +VL +TKALQ  AEG R+RMEEALELYKNNAL LQEKLE+SVGEIQKGN II KLQ + Q LRGK+KTKNEVL+KQEALLVEG+RGQDAG HRLS  VQENGRLTQEL  +K ALEE++RENESNQQVITWLNKEINDLQLGRGS GLM+A  GG  G   G+ +Q       +SSTAASVATFIPSY   TP K +G      TP S  V  + V K  HQ      K P+        VN+SASS+ +A+STHYLD LGLSDPYQ
Sbjct:    1 MAPQST-----SPRLHDSRGRGTCRSS---NVVFERANPLFEGTLDIEVCRQGMQGEQNQSQELSREMVPLTLRVLTGTANSTYTTSNQVGNYSRSEHVLRIEITQY--DNPTEEKAG--DEDAAASYFLYTLDVSESEYPILKRDQSLLVDFADFPDQFIGLVAQCRVSHSSTNASQRSSAASCDTIPAEVPPPYRARLTLATSSALSTSPS----SSAVFAIVEATPFKELSHLSLAFCPPTDHHLKAFLATRLQHLTFLHAAAVRTHHSVSHILSEEQARNLSLTTALSSLRREKEEETGTLKRTHMEAMTTALAEHSREKDQLISRHESQMNALRKRCEETERRRMELSEARHANEAKLREVTRRVEQLTDRLAESDKNTRTLVEEKKGLEDTLRNAEKHWDEAKLREEGLLQKLKGQDDVLERTKALQLVAEGARRRMEEALELYKNNALALQEKLEVSVGEIQKGNMIIQKLQTETQTLRGKIKTKNEVLKKQEALLVEGRRGQDAGVHRLSAVVQENGRLTQELGALKTALEESRRENESNQQVITWLNKEINDLQLGRGSHGLMHATVGGMEGPKYGRAKQ------HNSSTAASVATFIPSY--NTPAKYRGDTISQATPKS-PVESNAVDKDPHQS-----KSPLPRHSPSLGVNVSASSMSTAASTHYLDVLGLSDPYQ 660
The following BLAST results are available for this feature:
BLAST of NO02G05750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30093.16.200e-17156.52spindle assembly abnormal protein 6 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05750NO02G05750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05750.1NO02G05750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05750.1.cds1NO02G05750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05750.1.cds2NO02G05750.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05750.1 ID=NO02G05750.1|Name=NO02G05750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2034bp
ATGGCGCCACCTTCCGCTGCCTTTACCTCTTTCTCGTCTTCGATGCAGGG
CAACAGGGGGGATAGCTGCATCAGGGGGAGCAGCGGAATCAATGCTGCCT
TTGACCGTGCCAACCCATTGTTCGAAGCTACCCTACGTGTCGAGGTCTGC
CGTGCAGATAGTGATGCAGGGCAGTCACACCAGGAAGGTAGCAGTGAGGT
CTTGCCCCTTACACTCCGAGTCCTGACCGGCACCGCCCTGCCTTTTGATG
CGCCCTCTCAGCGCTACTGCGGCAGGACCGAAAGGGTGCTACGCATCGAA
ATCACGCAAAAGGATGACGACGACAAGAATGACGAAGGGGCTGGTGGACG
GGGAGATAACAACGCCTCCGCCTACTTCCTCTACTCCCTGGACGTGTCCG
AGACCGACTACCCGGCCTTGAAGCGGGACCAGAGCCTGTTGGTAGACTTC
ACTACCTTTCCCAACCACTTTATTGACCTGGTGGAAGGCTGCAGGGTCAT
GCCCTCCTCCTCTTCCCCTTCCTCCCTCCCTCCCTCCTCCACGGCCGAGC
TACGACCCAAATACCTGGCCCGCCTCACCATCCCCTCCTCCTCCTCCTCC
TCCTCCTCCACTACCACCACCTCACCTTCCTCGGGCACCTTCGCCATCGT
AGAGGCCACCCGATTTAAAGAGCTCACCCACCTCTCCCTTTCCTTCTGCC
CCCCCACGGACCACGCCCTCAAAGTCTACCTCGCCACGCGCCTCCGTCAT
CTTACCCTCCTCCACGCTGACTCCACGCACGCCCACCTCTCCATCTCCTC
TCTCCTCTCCCATGAACAAGCCCGAGCCCACTCCCTTTCCCTGCAGCTCT
CTCAGCTCCAGCACCAAAAAGACGAGGAAATCTCCTCCCTCCGCTCCTCC
CACACCCACGCCAGGGAAACTGCCCTGGCCGCGCACTCGCACGAAAAACA
ATCGCTGCTCCATAAACACGAGCAACAGATGGCAAGCCTAAAAAAGAGAT
TGGAGGAGACGGAGCGACGCAGGGCCGTGTTGGCGGAGGCCCGGCATGGG
CAGGAAGCAAGCTTCCGTGAGATGGCGAGGCAAGTCGAAGATCTGACCAG
TCGCCTGACAAGAAAGGAGGAGGAGGTGGTGCTTCGGCTGGGTGAGAAGG
AGGCGATGGATGGGACTTTGAAAAGAGTGGAGAGGGAGAGGGATGGTGCA
TTGCTGAAGGTGGAGGGGCTTCTGCAGCAGTTAAATGGTCAGGGTGAGGT
ACTGGGGAAGACAAAGGCCCTCCAGGCAGCCGCTGAGGGAGGCAGGAAGA
GGATGGAGGAGGCCTTGGAGCTGTACAAGAACAACGCGTTGACCCTGCAG
GAAAAGCTGGAGATGTCGGTGGGGGAGATCCAGAAGGGAAATGCCATCAT
TCATAAGCTGCAGGGAGACGTCCAGGCACTGCGAGGGAAACTTAAGACTA
AAAATGAAGTGCTCAGGAAGCAGGAGGCACTGCTGGTGGAGGGCCAGAGG
GGGCAGGACGCGGGCCAGCATCGATTGAGCATGTCGGTGCAGGAGAATGG
AAGGTTGACGCAGGAGTTGAGAGAGATGAAGGTAGCTTTGGAAGAGGCGA
AGAGGGAGAACGAATCGAACCAGCAGGTTATCACGTGGTTGAACAAGGAG
ATCAATGACTTGCAATTGGGAAGGGGGAGTAGTGGGCTGATGTACGCCAT
GACAGGGGGAGGAGGGACTGGAGGGAAAGGGCGGCAAGGCCTCAACCGTC
CCAGCACATCTTCCTCCACAGCTGCCTCCGTCGCGACCTTCATACCGTCC
TACCAGCATACCACGCCAACGAAGGGCAAAGGCGGACAGTCGGTCCACGT
TACCCCCTCGTCAGTGGCGGTACCCGTAAGTATGGTCAAGAAGCAGCAGC
ATCAACAACAAGAAGAGCAATACAAGGAGCCGATGCAGCATGAGAAAGTG
AATATGTCAGCTTCGTCTTTAGAGTCAGCCTCTTCAACACACTACCTGGA
CGCGCTGGGTTTGTCGGATCCCTACCAACAGTAA
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protein sequence of NO02G05750.1

>NO02G05750.1-protein ID=NO02G05750.1-protein|Name=NO02G05750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=678bp
MAPPSAAFTSFSSSMQGNRGDSCIRGSSGINAAFDRANPLFEATLRVEVC
RADSDAGQSHQEGSSEVLPLTLRVLTGTALPFDAPSQRYCGRTERVLRIE
ITQKDDDDKNDEGAGGRGDNNASAYFLYSLDVSETDYPALKRDQSLLVDF
TTFPNHFIDLVEGCRVMPSSSSPSSLPPSSTAELRPKYLARLTIPSSSSS
SSSTTTTSPSSGTFAIVEATRFKELTHLSLSFCPPTDHALKVYLATRLRH
LTLLHADSTHAHLSISSLLSHEQARAHSLSLQLSQLQHQKDEEISSLRSS
HTHARETALAAHSHEKQSLLHKHEQQMASLKKRLEETERRRAVLAEARHG
QEASFREMARQVEDLTSRLTRKEEEVVLRLGEKEAMDGTLKRVERERDGA
LLKVEGLLQQLNGQGEVLGKTKALQAAAEGGRKRMEEALELYKNNALTLQ
EKLEMSVGEIQKGNAIIHKLQGDVQALRGKLKTKNEVLRKQEALLVEGQR
GQDAGQHRLSMSVQENGRLTQELREMKVALEEAKRENESNQQVITWLNKE
INDLQLGRGSSGLMYAMTGGGGTGGKGRQGLNRPSTSSSTAASVATFIPS
YQHTTPTKGKGGQSVHVTPSSVAVPVSMVKKQQHQQQEEQYKEPMQHEKV
NMSASSLESASSTHYLDALGLSDPYQQ*
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mRNA from alignment at chr2:1532921..1535208+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05750.1 ID=NO02G05750.1|Name=NO02G05750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2288bp|location=Sequence derived from alignment at chr2:1532921..1535208+ (Nannochloropsis oceanica)
ATGGCGCCACCTTCCGCTGCCTTTACCTCTTTCTCGTCTTCGATGCAGGG
CAACAGGGGGGATAGCTGCATCAGGGGGAGCAGCGGAATCAATGCTGCCT
TTGACCGTGCCAACCCATTGTTCGAAGCTACCCTACGTGTCGAGGTCTGC
CGTGCAGATAGTGATGCAGGGCAGTCACACCAGGAAGGTAGCAGTGAGGT
GAGTGTGCGTGTGTGTTTGTGCCTGTTGAGTAGTGAAGCTCCATCCCGTA
GCCGGCCCTCTAAACTCCCCTCCTTCCTCCCTCACATGTGTGCATCTCCT
AAGGCTGCCAGCAGAATTTCTCCCAATCTATACCGTACATCAGCGCCTCA
GTGCACCTCCCTCACATTCCCTCTGGTCGCTCTTCCTCCTCCTCATCGAG
CTCTCATCCTCCTTCCTCCACCCTACCCATATCCCCAAACCGACCGACAC
AGGTCTTGCCCCTTACACTCCGAGTCCTGACCGGCACCGCCCTGCCTTTT
GATGCGCCCTCTCAGCGCTACTGCGGCAGGACCGAAAGGGTGCTACGCAT
CGAAATCACGCAAAAGGATGACGACGACAAGAATGACGAAGGGGCTGGTG
GACGGGGAGATAACAACGCCTCCGCCTACTTCCTCTACTCCCTGGACGTG
TCCGAGACCGACTACCCGGCCTTGAAGCGGGACCAGAGCCTGTTGGTAGA
CTTCACTACCTTTCCCAACCACTTTATTGACCTGGTGGAAGGCTGCAGGG
TCATGCCCTCCTCCTCTTCCCCTTCCTCCCTCCCTCCCTCCTCCACGGCC
GAGCTACGACCCAAATACCTGGCCCGCCTCACCATCCCCTCCTCCTCCTC
CTCCTCCTCCTCCACTACCACCACCTCACCTTCCTCGGGCACCTTCGCCA
TCGTAGAGGCCACCCGATTTAAAGAGCTCACCCACCTCTCCCTTTCCTTC
TGCCCCCCCACGGACCACGCCCTCAAAGTCTACCTCGCCACGCGCCTCCG
TCATCTTACCCTCCTCCACGCTGACTCCACGCACGCCCACCTCTCCATCT
CCTCTCTCCTCTCCCATGAACAAGCCCGAGCCCACTCCCTTTCCCTGCAG
CTCTCTCAGCTCCAGCACCAAAAAGACGAGGAAATCTCCTCCCTCCGCTC
CTCCCACACCCACGCCAGGGAAACTGCCCTGGCCGCGCACTCGCACGAAA
AACAATCGCTGCTCCATAAACACGAGCAACAGATGGCAAGCCTAAAAAAG
AGATTGGAGGAGACGGAGCGACGCAGGGCCGTGTTGGCGGAGGCCCGGCA
TGGGCAGGAAGCAAGCTTCCGTGAGATGGCGAGGCAAGTCGAAGATCTGA
CCAGTCGCCTGACAAGAAAGGAGGAGGAGGTGGTGCTTCGGCTGGGTGAG
AAGGAGGCGATGGATGGGACTTTGAAAAGAGTGGAGAGGGAGAGGGATGG
TGCATTGCTGAAGGTGGAGGGGCTTCTGCAGCAGTTAAATGGTCAGGGTG
AGGTACTGGGGAAGACAAAGGCCCTCCAGGCAGCCGCTGAGGGAGGCAGG
AAGAGGATGGAGGAGGCCTTGGAGCTGTACAAGAACAACGCGTTGACCCT
GCAGGAAAAGCTGGAGATGTCGGTGGGGGAGATCCAGAAGGGAAATGCCA
TCATTCATAAGCTGCAGGGAGACGTCCAGGCACTGCGAGGGAAACTTAAG
ACTAAAAATGAAGTGCTCAGGAAGCAGGAGGCACTGCTGGTGGAGGGCCA
GAGGGGGCAGGACGCGGGCCAGCATCGATTGAGCATGTCGGTGCAGGAGA
ATGGAAGGTTGACGCAGGAGTTGAGAGAGATGAAGGTAGCTTTGGAAGAG
GCGAAGAGGGAGAACGAATCGAACCAGCAGGTTATCACGTGGTTGAACAA
GGAGATCAATGACTTGCAATTGGGAAGGGGGAGTAGTGGGCTGATGTACG
CCATGACAGGGGGAGGAGGGACTGGAGGGAAAGGGCGGCAAGGCCTCAAC
CGTCCCAGCACATCTTCCTCCACAGCTGCCTCCGTCGCGACCTTCATACC
GTCCTACCAGCATACCACGCCAACGAAGGGCAAAGGCGGACAGTCGGTCC
ACGTTACCCCCTCGTCAGTGGCGGTACCCGTAAGTATGGTCAAGAAGCAG
CAGCATCAACAACAAGAAGAGCAATACAAGGAGCCGATGCAGCATGAGAA
AGTGAATATGTCAGCTTCGTCTTTAGAGTCAGCCTCTTCAACACACTACC
TGGACGCGCTGGGTTTGTCGGATCCCTACCAACAGTAA
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Coding sequence (CDS) from alignment at chr2:1532921..1535208+

>NO02G05750.1 ID=NO02G05750.1|Name=NO02G05750.1|organism=Nannochloropsis oceanica|type=CDS|length=2034bp|location=Sequence derived from alignment at chr2:1532921..1535208+ (Nannochloropsis oceanica)
ATGGCGCCACCTTCCGCTGCCTTTACCTCTTTCTCGTCTTCGATGCAGGG
CAACAGGGGGGATAGCTGCATCAGGGGGAGCAGCGGAATCAATGCTGCCT
TTGACCGTGCCAACCCATTGTTCGAAGCTACCCTACGTGTCGAGGTCTGC
CGTGCAGATAGTGATGCAGGGCAGTCACACCAGGAAGGTAGCAGTGAGGT
CTTGCCCCTTACACTCCGAGTCCTGACCGGCACCGCCCTGCCTTTTGATG
CGCCCTCTCAGCGCTACTGCGGCAGGACCGAAAGGGTGCTACGCATCGAA
ATCACGCAAAAGGATGACGACGACAAGAATGACGAAGGGGCTGGTGGACG
GGGAGATAACAACGCCTCCGCCTACTTCCTCTACTCCCTGGACGTGTCCG
AGACCGACTACCCGGCCTTGAAGCGGGACCAGAGCCTGTTGGTAGACTTC
ACTACCTTTCCCAACCACTTTATTGACCTGGTGGAAGGCTGCAGGGTCAT
GCCCTCCTCCTCTTCCCCTTCCTCCCTCCCTCCCTCCTCCACGGCCGAGC
TACGACCCAAATACCTGGCCCGCCTCACCATCCCCTCCTCCTCCTCCTCC
TCCTCCTCCACTACCACCACCTCACCTTCCTCGGGCACCTTCGCCATCGT
AGAGGCCACCCGATTTAAAGAGCTCACCCACCTCTCCCTTTCCTTCTGCC
CCCCCACGGACCACGCCCTCAAAGTCTACCTCGCCACGCGCCTCCGTCAT
CTTACCCTCCTCCACGCTGACTCCACGCACGCCCACCTCTCCATCTCCTC
TCTCCTCTCCCATGAACAAGCCCGAGCCCACTCCCTTTCCCTGCAGCTCT
CTCAGCTCCAGCACCAAAAAGACGAGGAAATCTCCTCCCTCCGCTCCTCC
CACACCCACGCCAGGGAAACTGCCCTGGCCGCGCACTCGCACGAAAAACA
ATCGCTGCTCCATAAACACGAGCAACAGATGGCAAGCCTAAAAAAGAGAT
TGGAGGAGACGGAGCGACGCAGGGCCGTGTTGGCGGAGGCCCGGCATGGG
CAGGAAGCAAGCTTCCGTGAGATGGCGAGGCAAGTCGAAGATCTGACCAG
TCGCCTGACAAGAAAGGAGGAGGAGGTGGTGCTTCGGCTGGGTGAGAAGG
AGGCGATGGATGGGACTTTGAAAAGAGTGGAGAGGGAGAGGGATGGTGCA
TTGCTGAAGGTGGAGGGGCTTCTGCAGCAGTTAAATGGTCAGGGTGAGGT
ACTGGGGAAGACAAAGGCCCTCCAGGCAGCCGCTGAGGGAGGCAGGAAGA
GGATGGAGGAGGCCTTGGAGCTGTACAAGAACAACGCGTTGACCCTGCAG
GAAAAGCTGGAGATGTCGGTGGGGGAGATCCAGAAGGGAAATGCCATCAT
TCATAAGCTGCAGGGAGACGTCCAGGCACTGCGAGGGAAACTTAAGACTA
AAAATGAAGTGCTCAGGAAGCAGGAGGCACTGCTGGTGGAGGGCCAGAGG
GGGCAGGACGCGGGCCAGCATCGATTGAGCATGTCGGTGCAGGAGAATGG
AAGGTTGACGCAGGAGTTGAGAGAGATGAAGGTAGCTTTGGAAGAGGCGA
AGAGGGAGAACGAATCGAACCAGCAGGTTATCACGTGGTTGAACAAGGAG
ATCAATGACTTGCAATTGGGAAGGGGGAGTAGTGGGCTGATGTACGCCAT
GACAGGGGGAGGAGGGACTGGAGGGAAAGGGCGGCAAGGCCTCAACCGTC
CCAGCACATCTTCCTCCACAGCTGCCTCCGTCGCGACCTTCATACCGTCC
TACCAGCATACCACGCCAACGAAGGGCAAAGGCGGACAGTCGGTCCACGT
TACCCCCTCGTCAGTGGCGGTACCCGTAAGTATGGTCAAGAAGCAGCAGC
ATCAACAACAAGAAGAGCAATACAAGGAGCCGATGCAGCATGAGAAAGTG
AATATGTCAGCTTCGTCTTTAGAGTCAGCCTCTTCAACACACTACCTGGA
CGCGCTGGGTTTGTCGGATCCCTACCAACAGTAA
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Synonyms
Publications