NO02G05720.1, NO02G05720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05720.1
Unique NameNO02G05720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length771
Alignment locationchr2:1522471..1524641 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1522471..1524641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05720.1 vs.
Match: EWM30104.1 (dihydrolipoamide s-acetyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 155.2 bits (391), Expect = 2.700e-34
Identity = 84/123 (68.29%), Postives = 94/123 (76.42%), Query Frame = 0 
Query:    1 MLALASRRTAALAAST-TGIRASLVRPTKATSTLSGSRGIGFATLPEHTVVGLPALSPTMTHGNLALWHKKEGDDIGPGDVLCDIETDKATMAFEAQDDAVLAKILVTEGASDIAVGSPIMVI 123
            MLA ASRR     A T  G R +L R ++     S      FA+LPEHTVVG+PALSPTMTHGN+A+WHKKEGD+IGPGD LCDIETDKATMAFEAQD+  +AKILV EG SDIAVGSPIMVI
Sbjct:    1 MLAFASRRLVVAGAVTRAGTRGALPRASRPKYLASTMERATFASLPEHTVVGMPALSPTMTHGNVAVWHKKEGDEIGPGDALCDIETDKATMAFEAQDEGAVAKILVEEGTSDIAVGSPIMVI 123
The following BLAST results are available for this feature:
BLAST of NO02G05720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30104.12.700e-3468.29dihydrolipoamide s-acetyltransferase [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05720NO02G05720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05720.1NO02G05720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05720.1.cds1NO02G05720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05720.1.cds2NO02G05720.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05720.1.cds3NO02G05720.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05720.1.cds4NO02G05720.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05720.1.cds5NO02G05720.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05720.1.cds6NO02G05720.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05720.1.cds7NO02G05720.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05720.1 ID=NO02G05720.1|Name=NO02G05720.1|organism=Nannochloropsis oceanica|type=mRNA|length=771bp
ATGCTAGCTTTAGCATCCCGCAGGACTGCCGCCCTTGCTGCTTCTACCAC
AGGCATCCGTGCGTCGCTCGTTCGACCCACAAAGGCCACAAGCACCCTTT
CTGGAAGCAGAGGGATCGGTTTCGCCACCCTCCCCGAGCATACGGTGGTT
GGTCTACCCGCCCTTTCGCCGACCATGACCCATGGCAACCTGGCACTGTG
GCACAAAAAGGAGGGCGATGATATTGGCCCAGGGGACGTGCTTTGCGACA
TCGAGACGGACAAGGCCACCATGGCGTTCGAAGCTCAGGACGATGCTGTG
CTGGCCAAGATCCTGGTCACAGAAGGGGCAAGTGACATCGCCGTCGGCTC
GCCCATCATGGTCATCGTTGAATCCAAAGATGACGTCGCCGCCTTCGCGG
ACTTTTCTCTCTCGAATATCACCCCTGCCCCTGCTGCCCCCGCCGCAGCG
AAGGAAGAGGAAGCGTCTGCCCCTCCCCCTCCTCCCCCGACAACAGCCTC
TCCTCCCCCTCCCCCTCCTCCTCCCAAGCCAGCCGCCGCACCCGCGGCAG
CAGCGCCTGTCGCTCCTCCTCCTGCGAGTGCTACTGCTACTACTACTGCC
ACTGCACCTCCTCCTTCACCTTCCCCTTCCTCGTCTTCAATACCAGCAGA
TGCGTATGCGTTCAAGCGATGGGGCACTTTCTCGAGGGGAGGGGCCTTGG
CCAAGAGCCTAAGCAAGGCTCAAAAGGCGTATGTTGAAGCCTACGGATCG
ACAGGACAGACACCATTATAA
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protein sequence of NO02G05720.1

>NO02G05720.1-protein ID=NO02G05720.1-protein|Name=NO02G05720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MLALASRRTAALAASTTGIRASLVRPTKATSTLSGSRGIGFATLPEHTVV
GLPALSPTMTHGNLALWHKKEGDDIGPGDVLCDIETDKATMAFEAQDDAV
LAKILVTEGASDIAVGSPIMVIVESKDDVAAFADFSLSNITPAPAAPAAA
KEEEASAPPPPPPTTASPPPPPPPPKPAAAPAAAAPVAPPPASATATTTA
TAPPPSPSPSSSSIPADAYAFKRWGTFSRGGALAKSLSKAQKAYVEAYGS
TGQTPL*
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mRNA from alignment at chr2:1522471..1524641+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05720.1 ID=NO02G05720.1|Name=NO02G05720.1|organism=Nannochloropsis oceanica|type=mRNA|length=2171bp|location=Sequence derived from alignment at chr2:1522471..1524641+ (Nannochloropsis oceanica)
ATGCTAGCTTTAGCATCCCGCAGGACTGCCGCCCTTGCTGCTTCTACCAC
AGGTACGCTTGTTTATTGCTCCTTATCTCGTCGGCGAATGAAAGGGATCG
CGAGCTGTTGTTCGTGTGCTCTCTATTTCGGGGGTAGGGGGAAAGGGGGG
GTGGGGTTGGGGGGGGGATGCGTGATGTGTATTAGTTGAAATCATGGCCT
CTGTGCCTGTCCATGCTCTGTCTCGACCGCTTGCGGCACATACTATAGAT
TTTTGCCCGTGTCGTTTGATTATGTCGAAGCGCTCTGTGCCTCCATCCCC
ACGAGTACTCACCTCCCAATCTCAACGCATCCATAGGCATCCGTGCGTCG
CTCGTTCGACCCACAAAGGCCACAAGCACCCTTTCTGGAAGCAGAGGGAT
CGGTTTCGCCACCCTCCCCGAGCATACGGTGGTTGGTCTACCCGGTACGT
GTGGCGTGACCAGAGGGTGGGAATGAAGGCGAATCGATGATACTCCTCCC
GGCGGAAGTGCCGATGATTGGTTGGTTGGATACTTTTTACAGAGACATCG
ATACCACAGTCTTTTTTGTGGCTAAATGATGGTGAAAAAGCCAGGTTGAT
GACTCACATGCTTTTCTTCAGCTAACCATTACCATCCCTCTACACTGTAT
AGCCCTTTCGCCGACCATGACCCATGGCAACCTGGCACTGTGGCACAAAA
AGGTACGCGAGGGGTCGATAAATAATATTGTGCCCTCAGCCCAATTCTTC
CCGCGTTTCCGTCGCATTCGTCGCCATTCCACCCCACTGATCACTCCCTC
CCTCCCTCCCTCCCTCCCTCCGCCCCACGTAGGAGGGCGATGATATTGGC
CCAGGGGACGTGCTTTGCGACATCGAGACGGACAAGGCCACCATGGCGTT
CGAAGCTCAGGTATGGACACAACACGGGAAAAAAAAGGGAAGGATGGAGG
GAGGAAGGGGGGTGGGACGGGGGTCACCGGGAGGCTCCGGTGTGGACAGG
GGGGAAGAGTAAAGGGAAGGACGGAGGAAAGAAGGTATGGAATGCAGGGG
GAGAGGGCACGGTGGAGGGAGGGGTTGGACAGAAGCTATAGGCCGTGCAC
TGTCACATAGTTCTTTGTTTTGGAAAAATCAACAAACCAAGATGGAATAT
AATTTAATTTCTCATATCTCTTTTCTCCCACCTACTTTGTCGCTCTCTTC
TAACACAGGACGATGCTGTGCTGGCCAAGATCCTGGTCACAGAAGGGGCA
AGTGACATCGCCGTCGGCTCGCCCATCATGGTACCCCCACCTTTCTCTCC
CCTTCTCCCTTCCTCGCTCCCTCTCTCTCTATCCTTCCCTTCATCTGCCT
GCCACTCGTGCCCCCCCCCATCCTTCCTCCTTCTCGCAACCAACATCCGC
TACGCATCCGCTGCCCAACCAACTTTCCTTTTGACCCTCCTTCCCTCCCT
CCCTCCCTCACACTCGCCTCCCCTCCCTCCTTCATTCCCTCCTTCCCCTC
TTCCCCATCATCATCTCTCAGGTCATCGTTGAATCCAAAGATGACGTCGC
CGCCTTCGCGGACTTTTCTCTCTCGAATATCACCCCTGCCCCTGCTGCCC
CCGCCGCAGCGAAGGAAGAGGAAGCGTCTGCCCCTCCCCCTCCTCCCCCG
ACAACAGCCTCTCCTCCCCCTCCCCCTCCTCCTCCCAAGCCAGCCGCCGC
ACCCGCGGCAGCAGCGCCTGTCGCTCCTCCTCCTGCGAGTGCTACTGCTA
CTACTACTGCCACTGCACCTCCTCCTTCACCTTCCCCTTCCTCGTCTTCA
ATACCAGCAGATGCGTATGCGTTCAAGCGATGGGGCACTTTCTCGAGGGG
AGGGGCCTTGGCCAAGAGGTGAGGGTGGGAGGGAGGGAGGGAGGGGGGGT
TGGGTATATCACGGGGAAAATGCGGGCGTGTGCTGAAACATGATGTGCAT
ATTTTGGCTGTGAGTCAGAGTGTTTCACCGTACATACATAGAAAGAGGTA
TGGGTTGGCTTCTCTATATGCTCCGTCATTCCTCCAACTTTGTGCACTCA
TTCTCACTCAATTCATCCCTCCTCCTTGCCCTTCCTCCCTCTTCACCCTC
CCTGCAGCCTAAGCAAGGCTCAAAAGGCGTATGTTGAAGCCTACGGATCG
ACAGGACAGACACCATTATAA
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Coding sequence (CDS) from alignment at chr2:1522471..1524641+

>NO02G05720.1 ID=NO02G05720.1|Name=NO02G05720.1|organism=Nannochloropsis oceanica|type=CDS|length=771bp|location=Sequence derived from alignment at chr2:1522471..1524641+ (Nannochloropsis oceanica)
ATGCTAGCTTTAGCATCCCGCAGGACTGCCGCCCTTGCTGCTTCTACCAC
AGGCATCCGTGCGTCGCTCGTTCGACCCACAAAGGCCACAAGCACCCTTT
CTGGAAGCAGAGGGATCGGTTTCGCCACCCTCCCCGAGCATACGGTGGTT
GGTCTACCCGCCCTTTCGCCGACCATGACCCATGGCAACCTGGCACTGTG
GCACAAAAAGGAGGGCGATGATATTGGCCCAGGGGACGTGCTTTGCGACA
TCGAGACGGACAAGGCCACCATGGCGTTCGAAGCTCAGGACGATGCTGTG
CTGGCCAAGATCCTGGTCACAGAAGGGGCAAGTGACATCGCCGTCGGCTC
GCCCATCATGGTCATCGTTGAATCCAAAGATGACGTCGCCGCCTTCGCGG
ACTTTTCTCTCTCGAATATCACCCCTGCCCCTGCTGCCCCCGCCGCAGCG
AAGGAAGAGGAAGCGTCTGCCCCTCCCCCTCCTCCCCCGACAACAGCCTC
TCCTCCCCCTCCCCCTCCTCCTCCCAAGCCAGCCGCCGCACCCGCGGCAG
CAGCGCCTGTCGCTCCTCCTCCTGCGAGTGCTACTGCTACTACTACTGCC
ACTGCACCTCCTCCTTCACCTTCCCCTTCCTCGTCTTCAATACCAGCAGA
TGCGTATGCGTTCAAGCGATGGGGCACTTTCTCGAGGGGAGGGGCCTTGG
CCAAGAGCCTAAGCAAGGCTCAAAAGGCGTATGTTGAAGCCTACGGATCG
ACAGGACAGACACCATTATAA
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Synonyms
Publications