NO02G05690.1, NO02G05690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05690.1
Unique NameNO02G05690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2152
Alignment locationchr2:1512048..1514344 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1512048..1514344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05690.1 vs.
Match: EWM30101.1 (NAD(P)-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 719.2 bits (1855), Expect = 8.000e-204
Identity = 357/437 (81.69%), Postives = 390/437 (89.24%), Query Frame = 0 
Query:    1 MAPLTTYVKPLLVLGAATATLTNAFVLPSARPLPSSAMATAAAKTSPLFTRTTSSIPTTTRPAQDTAVFATNFFDSFFAPKN-KGAGKAGNKKTVVLTGTSSGLGKGTLKALCARGDYFVICGVRDVAKMQRVAEELNLDPSLFTIRSLDLSSFDSVRKFAKDVKAVKGGKPLDALVCNAAVYLPALPTPTFTPDGIEESLQINHLSHFLLVSLLIEDLKKAKDPRCIIVGSITGNDNTIAGAFVWPRASLGDLKGMEEGAKMPVSMIDGKAFNGAKAYKDSKMCNMMTVNELHRRYHDSTGITFNTMYPGCIAETALFREKRQWFRTIFPLFMKYVTGGYVSEDEAGERLAQTVWDPELKKSGQYWCWNGQAQQFGYYDPATKQVRGAGGSGGTVFEGKLAGQVMDGVKAEKMWELSSAITGAAWPKVGERELANV 437
            MAPL  Y++P +VL AATA +T+AF+LP+ RP+P+    T AA+TSPLF+R+++   T  RP + T + ATNFF+SFFAPK+  GAG  G KKT+VLTGTSSGLGK TLKALCARGD FVICGVRD+ KMQ VAEEL LDPS +TIR LDLSSF SVR+FAK+VKAVKGGKPLDALVCNAAVYLPA   PTFTPDGIEESLQINHLSHFLLVSLL++DLKKAKDPRC+IVGSITGNDNTIAGAFVWPRASLGDLKGM+EGAK PVSMIDGK FNGAKAYKDSKMCNMMTVNELH+RYHD+TGITF++MYPGCIAETALFREKRQWFRT+FPLFMKYVTGGYVSE+EAGERLAQTVWDP LK SGQYWCWNGQAQQFGYYDPATKQVRGAGGSGGTVF GKLAGQVMD  KAEKMWELSS ITGA WP VG RELANV
Sbjct:    1 MAPLKKYMQPAVVLAAATAGMTSAFLLPAMRPVPAPTTVTCAARTSPLFSRSSTPSVTPARPTKGTILSATNFFESFFAPKSASGAGARGGKKTIVLTGTSSGLGKATLKALCARGDNFVICGVRDMEKMQAVAEELGLDPSSYTIRPLDLSSFASVRRFAKEVKAVKGGKPLDALVCNAAVYLPARDYPTFTPDGIEESLQINHLSHFLLVSLLLDDLKKAKDPRCVIVGSITGNDNTIAGAFVWPRASLGDLKGMQEGAKEPVSMIDGKNFNGAKAYKDSKMCNMMTVNELHKRYHDATGITFSSMYPGCIAETALFREKRQWFRTLFPLFMKYVTGGYVSENEAGERLAQTVWDPALKTSGQYWCWNGQAQQFGYYDPATKQVRGAGGSGGTVFPGKLAGQVMDQAKAEKMWELSSEITGATWPSVGVRELANV 437
The following BLAST results are available for this feature:
BLAST of NO02G05690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30101.18.000e-20481.69NAD(P)-binding domain protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05690NO02G05690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05690.1NO02G05690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05690.1.cds1NO02G05690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05690.1.cds2NO02G05690.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05690.1 ID=NO02G05690.1|Name=NO02G05690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2152bp
TGTGTCTTGATTTCGGTACACTTGCTTTTCTTGGTGTGCGATCATTTTCA
CTTCAATCCCTTCTTCCATTCCATTTGAGTATGGTACAATACACTTACTC
CTAGCTTTGCTAGACGGACCACGAAGACCTCTGCTGATCTCTTCACAGCG
TGTCGGTTGGCAATCTCAACCTTCAGTCATAAGAAGACTGTTTGTTGCAC
TTCGAGCTTCGAGGTATCCTTGCTTTATATTTTCCCTGCTGCTACTACTG
CTGCTGCTGCAGCGGCACTGCAAGCAGGAAGGGACAAAAGATCTAATGGC
TGCCCCACCGCGTCCACGCGCTCACAGACATTTGCACTTCCATCTCTGCC
GTCAAAACGAGCATGCTATAGTCGTCGTGCAGGGTGTCGTGAGGGTGTCC
GCAGCATGCATGTCCTTTTGGGCCTCACTATCTTGCTTTGATATTGATCC
AACTCACCGAACCCCCCCCCTTCCACTTTCCAACCAGAACACGGGCAAAT
GGCTCCGTTAACGACTTATGTCAAGCCCTTGCTGGTACTCGGCGCGGCCA
CCGCCACCCTGACCAATGCCTTCGTGCTTCCCTCAGCCCGCCCCCTGCCC
AGCTCCGCCATGGCCACCGCCGCAGCCAAGACCTCCCCCCTTTTCACGCG
CACCACCTCTTCTATCCCTACCACGACCCGGCCTGCTCAGGACACAGCTG
TATTTGCCACCAACTTTTTTGACTCGTTCTTTGCGCCCAAGAACAAGGGA
GCAGGCAAAGCCGGCAACAAAAAGACCGTCGTGCTCACCGGCACCTCCTC
CGGCCTCGGGAAGGGCACTCTCAAGGCCCTGTGCGCCCGTGGCGACTATT
TTGTTATCTGTGGCGTGCGAGACGTGGCCAAGATGCAGCGTGTGGCGGAA
GAATTGAACCTGGACCCCTCCTTGTTCACCATCCGCTCCCTCGACTTGTC
CTCCTTCGATTCCGTCCGCAAGTTCGCCAAGGACGTGAAAGCCGTTAAGG
GTGGCAAGCCCCTGGACGCCTTGGTCTGCAATGCTGCTGTGTACCTCCCT
GCTCTTCCCACCCCTACCTTCACTCCCGACGGAATTGAGGAGTCGTTGCA
AATTAACCACCTGTCGCATTTCTTGTTGGTTTCTCTCCTGATCGAGGACT
TGAAGAAGGCCAAGGACCCCCGGTGCATCATCGTCGGCTCCATCACCGGT
AATGACAATACCATCGCGGGTGCATTTGTCTGGCCTCGGGCGTCCCTGGG
TGACTTGAAGGGCATGGAGGAGGGGGCCAAGATGCCCGTGTCGATGATCG
ATGGCAAGGCTTTCAATGGTGCCAAGGCATATAAGGACAGCAAGATGTGC
AACATGATGACGGTCAACGAGCTCCATCGCCGCTACCACGACTCGACGGG
AATCACCTTCAATACCATGTACCCAGGCTGCATCGCCGAGACGGCTCTCT
TCCGGGAGAAACGACAATGGTTCCGGACGATTTTCCCCCTCTTCATGAAG
TACGTCACGGGGGGCTATGTCTCTGAGGACGAGGCGGGAGAGAGGCTGGC
TCAGACGGTGTGGGACCCCGAGCTGAAGAAGAGCGGGCAGTACTGGTGCT
GGAACGGCCAGGCTCAGCAGTTCGGGTACTACGATCCGGCCACGAAGCAG
GTGCGAGGCGCGGGGGGCAGTGGAGGGACGGTTTTTGAGGGGAAGCTGGC
GGGGCAGGTGATGGATGGTGTGAAGGCGGAGAAGATGTGGGAGTTGAGCA
GTGCAATTACAGGCGCGGCCTGGCCCAAGGTGGGAGAGAGGGAGCTAGCG
AATGTGTAGAGGGTAGGGAAGGGGAGATGACCGTTTTTGAGAAGAGAAAG
TGTGTGAGTATAGAGGGGGTCGGGGGAGGATGGGAGAGAAGGAGATTGGA
GGTGGATATAGAGGCTGCATGATTTGTGTCCGTGCTATGTGTGCGTATGG
TGCATTGGATTCAATGGTTCTGAAAGGACACGGTGAATACATAAACAACC
ACGCTTTTTGGTGGGATGTGAAGGGGAAGGGAGGAGAGGCAAATGAGAAA
TGGGATATCGAAGCCCCCACAACAATTGAACGCAGGTTTATTTATTGTCA
TGCCATATGCTCGATGCAGGCATTTTTGGTTTAGAGTAAGAGGCAAAGTT
GA
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protein sequence of NO02G05690.1

>NO02G05690.1-protein ID=NO02G05690.1-protein|Name=NO02G05690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=437bp
MAPLTTYVKPLLVLGAATATLTNAFVLPSARPLPSSAMATAAAKTSPLFT
RTTSSIPTTTRPAQDTAVFATNFFDSFFAPKNKGAGKAGNKKTVVLTGTS
SGLGKGTLKALCARGDYFVICGVRDVAKMQRVAEELNLDPSLFTIRSLDL
SSFDSVRKFAKDVKAVKGGKPLDALVCNAAVYLPALPTPTFTPDGIEESL
QINHLSHFLLVSLLIEDLKKAKDPRCIIVGSITGNDNTIAGAFVWPRASL
GDLKGMEEGAKMPVSMIDGKAFNGAKAYKDSKMCNMMTVNELHRRYHDST
GITFNTMYPGCIAETALFREKRQWFRTIFPLFMKYVTGGYVSEDEAGERL
AQTVWDPELKKSGQYWCWNGQAQQFGYYDPATKQVRGAGGSGGTVFEGKL
AGQVMDGVKAEKMWELSSAITGAAWPKVGERELANV*
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mRNA from alignment at chr2:1512048..1514344+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05690.1 ID=NO02G05690.1|Name=NO02G05690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2297bp|location=Sequence derived from alignment at chr2:1512048..1514344+ (Nannochloropsis oceanica)
TGTGTCTTGATTTCGGTACACTTGCTTTTCTTGGTGTGCGATCATTTTCA
CTTCAATCCCTTCTTCCATTCCATTTGAGTATGGTACAATACACTTACTC
CTAGCTTTGCTAGACGGACCACGAAGACCTCTGCTGATCTCTTCACAGCG
TGTCGGTTGGCAATCTCAACCTTCAGTCATAAGAAGACTGTTTGTTGCAC
TTCGAGCTTCGAGGTATCCTTGCTTTATATTTTCCCTGCTGCTACTACTG
CTGCTGCTGCAGCGGCACTGCAAGCAGGAAGGGACAAAAGATCTAATGGC
TGCCCCACCGCGTCCACGCGCTCACAGACATTTGCACTTCCATCTCTGCC
GTCAAAACGAGCATGCTATAGTCGTCGTGCAGGGTGTCGTGAGGGTGTCC
GCAGCATGCATGTCCTTTTGGGCCTCACTATCTTGCTTTGATATTGATCC
AACTCACCGAACCCCCCCCCTTCCACTTTCCAACCAGAACACGGGCAAAT
GGCTCCGTTAACGACTTATGTCAAGCCCTTGCTGGTACTCGGCGCGGCCA
CCGCCACCCTGACCAATGCCTTCGTGCTTCCCTCAGCCCGCCCCCTGCCC
AGCTCCGCCATGGCCACCGCCGCAGCCAAGACCTCCCCCCTTTTCACGCG
CACCACCTCTTCTATCCCTACCACGACCCGGCCTGCTCAGGACACAGCTG
TATTTGCCACCAACTTTTTTGACTCGTTCTTTGCGCCCAAGAACAAGGGA
GCAGGCAAAGCCGGCAACAAAAAGACCGTCGTGCTCACCGGCACCTCCTC
CGGCCTCGGGAAGGGCACTCTCAAGGCCCTGTGCGCCCGTGGCGACTATT
TTGTTATCTGTGGCGTGCGAGACGTGGCCAAGATGCAGCGTGTGGCGGAA
GAATTGAACCTGGACCCCTCCTTGTTCACCATCCGCTCCCTCGACTTGTC
CTCCTTCGATTCCGTCCGCAAGTTCGCCAAGGACGTGAAAGCCGTTAAGG
GTGGCAAGCCCCTGGACGCCTTGGTCTGCAATGCTGCTGTGTACCTCCCT
GCTCTTCCCACCCCTACCTTCACTCCCGACGGAATTGAGGAGTCGTTGCA
AATTAACCACCTGTCGCATTTCTTGTTGGTTTCTCTCCTGATCGAGGACT
TGAAGAAGGCCAAGGACCCCCGGTGCATCATCGTCGGCTCCATCACCGGT
AATGACAATACCATCGCGGGTGCATTTGTCTGGCCTCGGGCGTCCCTGGG
TGACTTGAAGGGCATGGAGGAGGGGGCCAAGATGCCCGTGTCGATGATCG
ATGGCAAGGCTTTCAATGGTGCCAAGGCATATAAGGACAGCAAGGTAGGG
AATGGAGGGAGCGAGGGAGGGAGAGAAAGAGTGCATCGGAGTGTTTGTTG
CTCGTCTTTTTCATTCGACATAGCAAACGCATCTTCATCTCATGTAAACC
CTCCCTCGCTCCTCTCAACCCGTCCGTCCTTCCCCACAGATGTGCAACAT
GATGACGGTCAACGAGCTCCATCGCCGCTACCACGACTCGACGGGAATCA
CCTTCAATACCATGTACCCAGGCTGCATCGCCGAGACGGCTCTCTTCCGG
GAGAAACGACAATGGTTCCGGACGATTTTCCCCCTCTTCATGAAGTACGT
CACGGGGGGCTATGTCTCTGAGGACGAGGCGGGAGAGAGGCTGGCTCAGA
CGGTGTGGGACCCCGAGCTGAAGAAGAGCGGGCAGTACTGGTGCTGGAAC
GGCCAGGCTCAGCAGTTCGGGTACTACGATCCGGCCACGAAGCAGGTGCG
AGGCGCGGGGGGCAGTGGAGGGACGGTTTTTGAGGGGAAGCTGGCGGGGC
AGGTGATGGATGGTGTGAAGGCGGAGAAGATGTGGGAGTTGAGCAGTGCA
ATTACAGGCGCGGCCTGGCCCAAGGTGGGAGAGAGGGAGCTAGCGAATGT
GTAGAGGGTAGGGAAGGGGAGATGACCGTTTTTGAGAAGAGAAAGTGTGT
GAGTATAGAGGGGGTCGGGGGAGGATGGGAGAGAAGGAGATTGGAGGTGG
ATATAGAGGCTGCATGATTTGTGTCCGTGCTATGTGTGCGTATGGTGCAT
TGGATTCAATGGTTCTGAAAGGACACGGTGAATACATAAACAACCACGCT
TTTTGGTGGGATGTGAAGGGGAAGGGAGGAGAGGCAAATGAGAAATGGGA
TATCGAAGCCCCCACAACAATTGAACGCAGGTTTATTTATTGTCATGCCA
TATGCTCGATGCAGGCATTTTTGGTTTAGAGTAAGAGGCAAAGTTGA
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Coding sequence (CDS) from alignment at chr2:1512048..1514344+

>NO02G05690.1 ID=NO02G05690.1|Name=NO02G05690.1|organism=Nannochloropsis oceanica|type=CDS|length=1311bp|location=Sequence derived from alignment at chr2:1512048..1514344+ (Nannochloropsis oceanica)
ATGGCTCCGTTAACGACTTATGTCAAGCCCTTGCTGGTACTCGGCGCGGC
CACCGCCACCCTGACCAATGCCTTCGTGCTTCCCTCAGCCCGCCCCCTGC
CCAGCTCCGCCATGGCCACCGCCGCAGCCAAGACCTCCCCCCTTTTCACG
CGCACCACCTCTTCTATCCCTACCACGACCCGGCCTGCTCAGGACACAGC
TGTATTTGCCACCAACTTTTTTGACTCGTTCTTTGCGCCCAAGAACAAGG
GAGCAGGCAAAGCCGGCAACAAAAAGACCGTCGTGCTCACCGGCACCTCC
TCCGGCCTCGGGAAGGGCACTCTCAAGGCCCTGTGCGCCCGTGGCGACTA
TTTTGTTATCTGTGGCGTGCGAGACGTGGCCAAGATGCAGCGTGTGGCGG
AAGAATTGAACCTGGACCCCTCCTTGTTCACCATCCGCTCCCTCGACTTG
TCCTCCTTCGATTCCGTCCGCAAGTTCGCCAAGGACGTGAAAGCCGTTAA
GGGTGGCAAGCCCCTGGACGCCTTGGTCTGCAATGCTGCTGTGTACCTCC
CTGCTCTTCCCACCCCTACCTTCACTCCCGACGGAATTGAGGAGTCGTTG
CAAATTAACCACCTGTCGCATTTCTTGTTGGTTTCTCTCCTGATCGAGGA
CTTGAAGAAGGCCAAGGACCCCCGGTGCATCATCGTCGGCTCCATCACCG
GTAATGACAATACCATCGCGGGTGCATTTGTCTGGCCTCGGGCGTCCCTG
GGTGACTTGAAGGGCATGGAGGAGGGGGCCAAGATGCCCGTGTCGATGAT
CGATGGCAAGGCTTTCAATGGTGCCAAGGCATATAAGGACAGCAAGATGT
GCAACATGATGACGGTCAACGAGCTCCATCGCCGCTACCACGACTCGACG
GGAATCACCTTCAATACCATGTACCCAGGCTGCATCGCCGAGACGGCTCT
CTTCCGGGAGAAACGACAATGGTTCCGGACGATTTTCCCCCTCTTCATGA
AGTACGTCACGGGGGGCTATGTCTCTGAGGACGAGGCGGGAGAGAGGCTG
GCTCAGACGGTGTGGGACCCCGAGCTGAAGAAGAGCGGGCAGTACTGGTG
CTGGAACGGCCAGGCTCAGCAGTTCGGGTACTACGATCCGGCCACGAAGC
AGGTGCGAGGCGCGGGGGGCAGTGGAGGGACGGTTTTTGAGGGGAAGCTG
GCGGGGCAGGTGATGGATGGTGTGAAGGCGGAGAAGATGTGGGAGTTGAG
CAGTGCAATTACAGGCGCGGCCTGGCCCAAGGTGGGAGAGAGGGAGCTAG
CGAATGTGTAG
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Synonyms
Publications