NO02G05670.1, NO02G05670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05670.1
Unique NameNO02G05670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2261
Alignment locationchr2:1502814..1505822 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1502814..1505822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05670.1 vs.
Match: XP_004336447.1 (NADH dehydrogenase, putative [Acanthamoeba castellanii str. Neff]; ELR14434.1 NADH dehydrogenase, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 398.7 bits (1023), Expect = 3.000e-107
Identity = 223/487 (45.79%), Postives = 310/487 (63.66%), Query Frame = 0 
Query:   86 SSFSSSSTSCNAAASASEATTATASMIEA-LVMKKKAYTATVRRDA-RPPVVILGSGWAGFQLARDLDKEKYDVTLISDRNHFLFTPLLPSTTVGTLEFRTIQEPVRTI-PGITFYQAHATRLNLEDKVVACQEVFIDERFE----------INYEYLILAVGSTTNTFGIPGVCVENHVYFLKQLSDARAIRSRIIECFERASYPDLPSATQARLLSFVVVGGGPTSVEFASELYDFLRKDVHKWYPDLEEKVSVTLVEASEHILGTFDRRLVDYVGQVFQQRKVKVLVDTSVVKVDPCVVWLKDGTPLHFGLCVWSTGVKAVPLIESLPLTIPKGMGGRILVDDRLRLMGQEDKGIFAMGDCAVSASEPLPCLAQSAQQQARYLGGVLN---RYQDPHCSPDVPPFKYKHMGSMAQLGMWNGVVDSAKLDEEGKAGGRKGVLKGLTAFLLWRAAYWTKSVSWANKMLIPMFWLKSWIFGRDISRF 557
            S+  +S+++  A A    A TATA  +     ++  A T TV     R  +V+LG+GWAG++L  D+D  KY++++IS RN+FLFTPLL STTVGTLEFR + EPVRT  PG+ + QA AT ++  +KVV  + V+ +   +          I Y+ L++AVG+  NTFG+PGV  E + YFLK ++DAR IR RIIECFERAS P    A ++RLL FV+VGGGPTSVEF++EL+DFLRKDVHK YPDLE++V +TL+EA + +L TFD+RL DY  + F++R + V    SV +V    + L DG  + FGL VWSTG+  +P I+ LP   PK   GR+LVD+ L +     +G++A+GDCA   + PLP  AQ A+Q+ +YL   LN   R ++P        F+Y H G +A +G +  ++DS  +              G   +++W AAY TK VS  NKM+IPM+W KS++FGRDISRF
Sbjct:    8 STARTSTSTLLAVAYRPAAHTATALPLSGPRFVRALATTTTVDGGKQRKKLVVLGNGWAGYRLILDVDISKYELSVISPRNYFLFTPLLTSTTVGTLEFRGVIEPVRTARPGLNYIQAGATSVDTTNKVVTFESVYEERETDEEVPVHPAASIKYDELVIAVGAAPNTFGVPGV--EKYCYFLKSVADARNIRQRIIECFERASSPTTTEAERSRLLHFVIVGGGPTSVEFSAELHDFLRKDVHKIYPDLEKQVQITLIEAGKTLLSTFDQRLSDYTMRTFRKRNIDVRTSVSVKQVKRHEMVLSDGAVIPFGLGVWSTGLSPIPFIKGLP--FPKDRSGRLLVDEYLHVKAPGVEGVYAVGDCAAFETNPLPATAQGAEQEGKYLAQALNAKARGEEP------KKFQYHHKGMLAYVGGYRALIDSPLIKR-----------SGFLTWIMWNAAYITKLVSIKNKMMIPMYWFKSFVFGRDISRF 473
The following BLAST results are available for this feature:
BLAST of NO02G05670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_004336447.13.000e-10745.79NADH dehydrogenase, putative [Acanthamoeba castell... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05670NO02G05670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05670.1NO02G05670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05670.1.cds1NO02G05670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05670.1.cds2NO02G05670.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05670.1.cds3NO02G05670.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05670.1.cds4NO02G05670.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05670.1.cds5NO02G05670.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05670.1 ID=NO02G05670.1|Name=NO02G05670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2261bp
CAAACGTGCAAAATTGTGCCGCCGTGTCACCTGCCCTTTGTCTGTGAGGA
TGTTTCTATTTGTGTTTGTTGGGTTGGTAAATGGCATACAATCAGTGTCC
CTTTCTGAGATCGACCCTCTTCAACTGCTCGCTTTACACCTGTTCACTTT
ACGACCCTTCCACGCCAACCCACTTACTCACACTCAAACCCACAGACGCA
CACGACCTACGCGCGAATAGGGAGAAATACAAAGATAGGACGATGGTGGC
TTACCTGGTCCGGATACGACCTGTTTTTCGGGGCAGAAGCTGTAGCAGCC
GCAGTAGCAGCCTTCGCCTCGCAGCCGCCCCGGCCTCTTCCTTTTCCTCG
TCCTCCACCTCTTGCAATGCCGCTGCTAGCGCTTCCGAAGCTACCACAGC
AACCGCTAGTATGATCGAAGCCTTGGTCATGAAGAAGAAAGCTTACACGG
CCACCGTCAGGCGCGACGCCCGACCCCCGGTGGTTATTCTGGGAAGCGGT
TGGGCGGGCTTTCAATTGGCTCGAGACCTGGACAAGGAGAAGTATGACGT
GACCTTGATAAGCGACCGAAACCACTTCTTGTTTACACCATTACTACCAT
CGACAACTGTTGGTACATTGGAATTTAGGACGATTCAAGAGCCGGTTCGT
ACTATTCCAGGGATCACGTTTTACCAAGCACATGCGACCAGACTAAACTT
GGAAGATAAAGTGGTGGCATGCCAAGAAGTCTTTATCGACGAGCGTTTTG
AGATCAACTACGAATATCTGATTTTGGCGGTGGGCAGCACCACCAACACG
TTCGGCATTCCTGGGGTCTGTGTCGAGAACCATGTGTATTTCCTCAAGCA
ACTCAGTGACGCCCGCGCCATTCGCTCCCGGATTATCGAGTGCTTCGAAC
GCGCCTCCTACCCGGATTTACCCTCTGCCACCCAAGCAAGGCTTCTCTCC
TTTGTGGTGGTGGGGGGAGGGCCCACCTCGGTGGAGTTTGCGAGCGAGCT
GTACGACTTTTTGAGGAAGGACGTCCACAAGTGGTATCCTGACCTGGAAG
AGAAGGTCTCGGTGACACTGGTGGAGGCCTCCGAGCACATCCTCGGCACC
TTCGACCGCCGACTCGTTGACTACGTAGGGCAAGTTTTCCAACAGCGGAA
AGTAAAGGTTCTTGTGGACACCAGTGTTGTCAAGGTGGATCCCTGCGTCG
TTTGGCTGAAGGACGGCACACCCCTCCACTTTGGGCTCTGTGTCTGGAGC
ACTGGTGTCAAGGCCGTCCCTTTGATTGAATCCCTCCCTCTCACCATTCC
CAAGGGGATGGGGGGACGGATCCTGGTCGACGATCGCCTGCGTCTGATGG
GACAGGAGGATAAGGGCATCTTTGCCATGGGCGACTGTGCAGTCTCTGCA
TCGGAGCCTCTCCCTTGCCTGGCCCAATCGGCGCAGCAGCAAGCGCGATA
TTTGGGCGGTGTTTTGAATCGCTACCAGGACCCACACTGTAGCCCGGATG
TTCCTCCCTTCAAATATAAGCATATGGGAAGCATGGCACAGCTTGGGATG
TGGAATGGCGTGGTGGACTCGGCCAAGTTGGACGAGGAGGGGAAGGCGGG
AGGTAGAAAAGGGGTGTTGAAGGGTTTGACGGCCTTTTTGCTGTGGCGTG
CAGCATACTGGACGAAGAGTGTCTCATGGGCCAATAAAATGTTAATTCCC
ATGTTTTGGCTGAAAAGTTGGATCTTTGGGAGAGACATCTCTCGGTTTTG
AGGAGTGTCCGAGCACTGGTGATGGCGGTGGTAGTGTCGAAACGCGGCAG
CGGGGAGAATGGTAAGGATCAAATGGGAACAAGAATGAGTAGAGAAAGGA
TAAAGAGCCGATGTGACAGAGTCGTGTGGGGGCTAGTAAAAATTGTGTGG
CCTCGTTGGATGCGGGTAGGCGGAAAGGGATTGGACGATGTCGAAGGGCC
TAGTTGCCTTTCGCCGAAGGGATACGATGTCCCCGCTCACAGCCCTCTCT
CCTCGTTTCATGCTCGTCACATTGAGATAGAGTTAGCCTCTTGGAAGGTA
GAACGAAGTAAACAAGCCCGCCCTTAGTCGTGGCTGTGAGGGATGTGAGA
GGCGGAGGAGAAGCGGCGTGATGGTCTCTTTGAGACAAGAAATGGGACGT
CGCCGTGTGCATTTAGAGGATGAGGTGGAGACGTGTAAGCCGGCATGATT
ATTGCAGGGAGACATCTTGTACACAAATTATAAAATAACGTGAAAATGGT
GCAAGCCGGGT
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protein sequence of NO02G05670.1

>NO02G05670.1-protein ID=NO02G05670.1-protein|Name=NO02G05670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=557bp
MAYNQCPFLRSTLFNCSLYTCSLYDPSTPTHLLTLKPTDAHDLRANREKY
KDRTMVAYLVRIRPVFRGRSCSSRSSSLRLAAAPASSFSSSSTSCNAAAS
ASEATTATASMIEALVMKKKAYTATVRRDARPPVVILGSGWAGFQLARDL
DKEKYDVTLISDRNHFLFTPLLPSTTVGTLEFRTIQEPVRTIPGITFYQA
HATRLNLEDKVVACQEVFIDERFEINYEYLILAVGSTTNTFGIPGVCVEN
HVYFLKQLSDARAIRSRIIECFERASYPDLPSATQARLLSFVVVGGGPTS
VEFASELYDFLRKDVHKWYPDLEEKVSVTLVEASEHILGTFDRRLVDYVG
QVFQQRKVKVLVDTSVVKVDPCVVWLKDGTPLHFGLCVWSTGVKAVPLIE
SLPLTIPKGMGGRILVDDRLRLMGQEDKGIFAMGDCAVSASEPLPCLAQS
AQQQARYLGGVLNRYQDPHCSPDVPPFKYKHMGSMAQLGMWNGVVDSAKL
DEEGKAGGRKGVLKGLTAFLLWRAAYWTKSVSWANKMLIPMFWLKSWIFG
RDISRF*
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mRNA from alignment at chr2:1502814..1505822-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05670.1 ID=NO02G05670.1|Name=NO02G05670.1|organism=Nannochloropsis oceanica|type=mRNA|length=3009bp|location=Sequence derived from alignment at chr2:1502814..1505822- (Nannochloropsis oceanica)
CAAACGTGCAAAATTGTGCCGCCGTGTCACCTGCCCTTTGTCTGTGAGGA
TGTTTCTATTTGTGTTTGTTGGGTTGGTAAATGGCATACAATCAGTGTCC
CTTTCTGAGATCGACCCTCTTCAACTGCTCGCTTTACACCTGTTCACTTT
ACGACCCTTCCACGCCAACCCACTTACTCACACTCAAACCCACAGACGCA
CACGACCTACGCGCGAATAGGGAGAAATACAAAGATAGGACGATGGTGGC
TTACCTGGTCCGGATACGACCTGTTTTTCGGGGCAGAAGCTGTAGCAGCC
GCAGTAGCAGCCTTCGCCTCGCAGCCGCCCCGGCCTCTTCCTTTTCCTCG
TCCTCCACCTCTTGCAATGCCGCTGCTAGCGCTTCCGAAGCTACCACAGC
AACCGCTAGTATGATCGAAGCCTTGGTCATGAAGAAGAAAGCTTACACGG
CCACCGTCAGGCGCGACGCCCGACCCCCGGTGGTTATTCTGGGAAGCGGT
TGGGCGGGCTTTCAATTGGCTCGAGACCTGGACAAGGAGAAGTATGACGT
GACCTTGATAAGCGACCGAAACCACTTCTTGTTTACACCATTACTACCAT
CGACAACTGTTGGTACATTGGAATTTAGGACGATTCAAGAGCCGGTTCGT
ACTATTCCAGGGATCACGTTTTACCAAGGTGAAGCGGGGGGGGAAAAGCG
GAGGGGACAAAGGGACGGAGCGAGGAGAAAGTGCTAGCGACGAAGTCCCA
TTCCTAAGTATCGCATTGCCACCCCATGGATGGCTCTCCATACAAATATT
TAGACAACCTTAGATAAAAAAATGCAATGAAGTATATATTTATAACGACC
CTTCTCACACACTCTTCCTCGCCCGCTCCCCATCCCAACTAAGCACATGC
GACCAGACTAAACTTGGAAGATAAAGTGGTGGCATGCCAAGAAGTCTTTA
TCGACGAGCGTTTTGAGATCAACTACGAATATCTGATTTTGGCGGTGGGC
AGCACCACCAACACGTTCGGCATTCCTGGGGTCTGTGTCGAGAACCATGT
GTATTTCCTCAAGCAACTCAGGTAGGGCAGGAAGGAGGGAAGGGCCCCCA
AACTGATCGACATACGAATGCAAATTTTAATGCAATAGTGCATGCTGAAC
AGACAGCTCATCATTGTTTCCTCCTTCCCCGGTCGTTCCTTCCTTACGCC
CCTACAAGTGACGCCCGCGCCATTCGCTCCCGGATTATCGAGTGCTTCGA
ACGCGCCTCCTACCCGGATTTACCCTCTGCCACCCAAGCAAGGCTTCTCT
CCTTTGTGGTGGTGGGGGGAGGGCCCACCTCGGTGGAGTTTGCGAGCGAG
CTGTACGACTTTTTGAGGAAGGACGTCCACAAGTGGTATCCTGACCTGGA
AGAGAAGGTTAGAGAGAGAGGAGTGAGGGAGAGAGGGGGAGAGAGAGGGA
TCGAGGGAAGGCGGGAAGAAGACTTCGTGTCTTGGAGCTAAAAAATGAGT
TTCAAAAGTTCCTCTCTATGATTCTTTCCAAGACGGCCTTCGGCTTAACT
GACCTCATATCCGCTCGGCTTGCTCTCTTTCTCTCCACACCCTCTTTTCA
GGTCTCGGTGACACTGGTGGAGGCCTCCGAGCACATCCTCGGCACCTTCG
ACCGCCGACTCGTTGACTACGTAGGGCAAGTTTTCCAACAGCGGAAAGTA
AAGGTTCTTGTGGACACCAGTGTTGTCAAGGTAGGCACGGAAAACAGGAG
GGAGGGAGGGAGGTAGGTAGACGAGGGATGGATGCATATACGCATCTACA
CAGGCATCGCGCGCCTATCTGAAATGACATGTCTTTCTTCTTTTTGAATA
TGTAGAAAAATACCAAGAATGCCCTGTAGTCACGTGACCGTACACACATT
CTCTCGCTTGTTCCCTCCCTTCCTCCCGTTAGGTGGATCCCTGCGTCGTT
TGGCTGAAGGACGGCACACCCCTCCACTTTGGGCTCTGTGTCTGGAGCAC
TGGTGTCAAGGCCGTCCCTTTGATTGAATCCCTCCCTCTCACCATTCCCA
AGGGGATGGGGGGACGGATCCTGGTCGACGATCGCCTGCGTCTGATGGGA
CAGGAGGATAAGGGCATCTTTGCCATGGGCGACTGTGCAGTCTCTGCATC
GGAGCCTCTCCCTTGCCTGGCCCAATCGGCGCAGCAGCAAGCGCGATATT
TGGGCGGTGTTTTGAATCGCTACCAGGACCCACACTGTAGCCCGGATGTT
CCTCCCTTCAAATATAAGCATATGGGAAGCATGGCACAGCTTGGGATGTG
GAATGGCGTGGTGGACTCGGCCAAGTTGGACGAGGAGGGGAAGGCGGGAG
GTAGAAAAGGGGTGTTGAAGGGTTTGACGGCCTTTTTGCTGTGGCGTGCA
GCATACTGGACGAAGAGTGTCTCATGGGCCAATAAAATGTTAATTCCCAT
GTTTTGGCTGAAAAGTTGGATCTTTGGGAGAGACATCTCTCGGTTTTGAG
GAGTGTCCGAGCACTGGTGATGGCGGTGGTAGTGTCGAAACGCGGCAGCG
GGGAGAATGGTAAGGATCAAATGGGAACAAGAATGAGTAGAGAAAGGATA
AAGAGCCGATGTGACAGAGTCGTGTGGGGGCTAGTAAAAATTGTGTGGCC
TCGTTGGATGCGGGTAGGCGGAAAGGGATTGGACGATGTCGAAGGGCCTA
GTTGCCTTTCGCCGAAGGGATACGATGTCCCCGCTCACAGCCCTCTCTCC
TCGTTTCATGCTCGTCACATTGAGATAGAGTTAGCCTCTTGGAAGGTAGA
ACGAAGTAAACAAGCCCGCCCTTAGTCGTGGCTGTGAGGGATGTGAGAGG
CGGAGGAGAAGCGGCGTGATGGTCTCTTTGAGACAAGAAATGGGACGTCG
CCGTGTGCATTTAGAGGATGAGGTGGAGACGTGTAAGCCGGCATGATTAT
TGCAGGGAGACATCTTGTACACAAATTATAAAATAACGTGAAAATGGTGC
AAGCCGGGT
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Coding sequence (CDS) from alignment at chr2:1502814..1505822-

>NO02G05670.1 ID=NO02G05670.1|Name=NO02G05670.1|organism=Nannochloropsis oceanica|type=CDS|length=1671bp|location=Sequence derived from alignment at chr2:1502814..1505822- (Nannochloropsis oceanica)
ATGGCATACAATCAGTGTCCCTTTCTGAGATCGACCCTCTTCAACTGCTC
GCTTTACACCTGTTCACTTTACGACCCTTCCACGCCAACCCACTTACTCA
CACTCAAACCCACAGACGCACACGACCTACGCGCGAATAGGGAGAAATAC
AAAGATAGGACGATGGTGGCTTACCTGGTCCGGATACGACCTGTTTTTCG
GGGCAGAAGCTGTAGCAGCCGCAGTAGCAGCCTTCGCCTCGCAGCCGCCC
CGGCCTCTTCCTTTTCCTCGTCCTCCACCTCTTGCAATGCCGCTGCTAGC
GCTTCCGAAGCTACCACAGCAACCGCTAGTATGATCGAAGCCTTGGTCAT
GAAGAAGAAAGCTTACACGGCCACCGTCAGGCGCGACGCCCGACCCCCGG
TGGTTATTCTGGGAAGCGGTTGGGCGGGCTTTCAATTGGCTCGAGACCTG
GACAAGGAGAAGTATGACGTGACCTTGATAAGCGACCGAAACCACTTCTT
GTTTACACCATTACTACCATCGACAACTGTTGGTACATTGGAATTTAGGA
CGATTCAAGAGCCGGTTCGTACTATTCCAGGGATCACGTTTTACCAAGCA
CATGCGACCAGACTAAACTTGGAAGATAAAGTGGTGGCATGCCAAGAAGT
CTTTATCGACGAGCGTTTTGAGATCAACTACGAATATCTGATTTTGGCGG
TGGGCAGCACCACCAACACGTTCGGCATTCCTGGGGTCTGTGTCGAGAAC
CATGTGTATTTCCTCAAGCAACTCAGTGACGCCCGCGCCATTCGCTCCCG
GATTATCGAGTGCTTCGAACGCGCCTCCTACCCGGATTTACCCTCTGCCA
CCCAAGCAAGGCTTCTCTCCTTTGTGGTGGTGGGGGGAGGGCCCACCTCG
GTGGAGTTTGCGAGCGAGCTGTACGACTTTTTGAGGAAGGACGTCCACAA
GTGGTATCCTGACCTGGAAGAGAAGGTCTCGGTGACACTGGTGGAGGCCT
CCGAGCACATCCTCGGCACCTTCGACCGCCGACTCGTTGACTACGTAGGG
CAAGTTTTCCAACAGCGGAAAGTAAAGGTTCTTGTGGACACCAGTGTTGT
CAAGGTGGATCCCTGCGTCGTTTGGCTGAAGGACGGCACACCCCTCCACT
TTGGGCTCTGTGTCTGGAGCACTGGTGTCAAGGCCGTCCCTTTGATTGAA
TCCCTCCCTCTCACCATTCCCAAGGGGATGGGGGGACGGATCCTGGTCGA
CGATCGCCTGCGTCTGATGGGACAGGAGGATAAGGGCATCTTTGCCATGG
GCGACTGTGCAGTCTCTGCATCGGAGCCTCTCCCTTGCCTGGCCCAATCG
GCGCAGCAGCAAGCGCGATATTTGGGCGGTGTTTTGAATCGCTACCAGGA
CCCACACTGTAGCCCGGATGTTCCTCCCTTCAAATATAAGCATATGGGAA
GCATGGCACAGCTTGGGATGTGGAATGGCGTGGTGGACTCGGCCAAGTTG
GACGAGGAGGGGAAGGCGGGAGGTAGAAAAGGGGTGTTGAAGGGTTTGAC
GGCCTTTTTGCTGTGGCGTGCAGCATACTGGACGAAGAGTGTCTCATGGG
CCAATAAAATGTTAATTCCCATGTTTTGGCTGAAAAGTTGGATCTTTGGG
AGAGACATCTCTCGGTTTTGA
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Synonyms
Publications