NO02G05650.1, NO02G05650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05650.1
Unique NameNO02G05650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length285
Alignment locationchr2:1500017..1501041 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1500017..1501041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05650.1 vs.
Match: XP_005854855.1 (glucokinase [Nannochloropsis gaditana CCMP526]; EKU21509.1 glucokinase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 95.5 bits (236), Expect = 9.400e-17
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0 
Query:   44 VYDTKAKPTYLKAPSDGVVTALGLGGLTLVFLRTMTGFGDMALGVNKVEVQ 95
            ++DTKAKPTYLKAP DGVVTALGLGGL+LVFLRTMTGFGDMA GVNKVEVQ
Sbjct:  323 MFDTKAKPTYLKAPFDGVVTALGLGGLSLVFLRTMTGFGDMAFGVNKVEVQ 373
The following BLAST results are available for this feature:
BLAST of NO02G05650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854855.19.400e-1790.20glucokinase [Nannochloropsis gaditana CCMP526]; EK... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05650NO02G05650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05650.1NO02G05650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05650.1.cds1NO02G05650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05650.1.cds2NO02G05650.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05650.1.cds3NO02G05650.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05650.1 ID=NO02G05650.1|Name=NO02G05650.1|organism=Nannochloropsis oceanica|type=mRNA|length=285bp
ATGGCTCTGCTCTACAAAGGTGTGACTCGCGTCACCGCTGCCTCTGCCCG
CACGATGGTTCCCCGCCGCTCCATGGGCATATTCCACCCACTGGCCATGA
AACCGTACCAGCTGCCCAAGACGCAGAAGGTCTACGACACTAAGGCCAAG
CCCACTTACCTCAAGGCGCCTTCGGATGGGGTCGTGACCGCTCTTGGTTT
GGGGGGACTCACCCTCGTCTTCCTTCGCACCATGACCGGATTTGGGGACA
TGGCTCTGGGGGTTAATAAAGTGGAAGTTCAGTAA
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protein sequence of NO02G05650.1

>NO02G05650.1-protein ID=NO02G05650.1-protein|Name=NO02G05650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MALLYKGVTRVTAASARTMVPRRSMGIFHPLAMKPYQLPKTQKVYDTKAK
PTYLKAPSDGVVTALGLGGLTLVFLRTMTGFGDMALGVNKVEVQ*
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mRNA from alignment at chr2:1500017..1501041+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05650.1 ID=NO02G05650.1|Name=NO02G05650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1025bp|location=Sequence derived from alignment at chr2:1500017..1501041+ (Nannochloropsis oceanica)
ATGGCTCTGCTCTACAAAGGTACGTTCGTAGCCTAGGGCAGGAAGGGAGG
AGCGAGGGGTGAGAGGGGAGGGAGGAGGAGAGGAACTCTGTTTTTGCGGC
GCCCTCCCGGGATGCTCTTCGAGACTAATTTTACGTCGAGAGCATCTTAC
GCCCTGGTAGTCAGATATGTATAGATAGCAAAGGGGGGTAAACGGTAAGG
GCAGGTGGAAGACTTGTCCGGAAAGCCAAAAGGGAGAGGACATGTGGAGA
AGGCCCGTACGGCGGCCTGGTCGGATCCATGTCCATGAATGTCACTGGGA
TTCAGCAAGGGGATGCCTACCAACGTAGAGTAATAATGAGAGGCGGGGAG
ATCGAGTAATACAGAGAGATAGGGATAGAAAGAGAAAGGGATAGCACGAG
GACGACACAGGAAGGTGTCTATTGGCGCCGTGCAGATTTCCCAGGCATAT
CATCTCTGCTTTGTTGACTCAAACAAACAAATGTCTCCTTCCCTCTATCT
CTGCACTTGTAGGTGTGACTCGCGTCACCGCTGCCTCTGCCCGCACGATG
GTTCCCCGCCGCTCCATGGGCATATTCCACCCACTGGCCATGAAACCGTA
CCAGCTGCCCAAGACGCAGAAGGTGAGGGAAGGGGGAGGGAAGGAGGGAA
AGGAGGGGGAACTAAATAGTCTTTCTGCTAGATGAGCGTGAAGGAAGAGG
AGAGGAGGGAAGGATAAGGTGGCATTTATCAACTTATATGAGTTGTCATT
GAATGGCTTATACCAACATATCCTTCTTTCTTCCTTCCTTCCCTTCCACC
CTCCTTTCCCCCTTCCTCTTCCCCTCGCTCGTCCTTTTCGCTCGTCCTTT
TCCTCTTGTTCTCCTACAGGTCTACGACACTAAGGCCAAGCCCACTTACC
TCAAGGCGCCTTCGGATGGGGTCGTGACCGCTCTTGGTTTGGGGGGACTC
ACCCTCGTCTTCCTTCGCACCATGACCGGATTTGGGGACATGGCTCTGGG
GGTTAATAAAGTGGAAGTTCAGTAA
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Coding sequence (CDS) from alignment at chr2:1500017..1501041+

>NO02G05650.1 ID=NO02G05650.1|Name=NO02G05650.1|organism=Nannochloropsis oceanica|type=CDS|length=285bp|location=Sequence derived from alignment at chr2:1500017..1501041+ (Nannochloropsis oceanica)
ATGGCTCTGCTCTACAAAGGTGTGACTCGCGTCACCGCTGCCTCTGCCCG
CACGATGGTTCCCCGCCGCTCCATGGGCATATTCCACCCACTGGCCATGA
AACCGTACCAGCTGCCCAAGACGCAGAAGGTCTACGACACTAAGGCCAAG
CCCACTTACCTCAAGGCGCCTTCGGATGGGGTCGTGACCGCTCTTGGTTT
GGGGGGACTCACCCTCGTCTTCCTTCGCACCATGACCGGATTTGGGGACA
TGGCTCTGGGGGTTAATAAAGTGGAAGTTCAGTAA
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Synonyms
Publications