NO02G05640.1, NO02G05640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05640.1
Unique NameNO02G05640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1281
Alignment locationchr2:1497786..1499066 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1497786..1499066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05640.1 vs.
Match: EWM30065.1 (glucokinase [Nannochloropsis gaditana])

HSP 1 Score: 277.7 bits (709), Expect = 6.000e-71
Identity = 155/282 (54.96%), Postives = 194/282 (68.79%), Query Frame = 0 
Query:  153 IVLINDADAALAAEAWGGAARGHKDVVMLTLGTGIGVAVWLHGQAWSGSRGLVEGGHMVVEKEGRKCGCGQRGCLEMYASATAVVRRAEEVGFQMRRSKVREERGGDKGEAGTAGGEREHEGGTTVSLREEVDGQRE-----QAKKDGDQNGVLNA-------KRVFDAAFA-----SPSDPLAMQVVEEAADYLGLGCLNLCRVLDPSLVLFAGGMSGAGPRLVAMVKEKFVAHGWSILPHDVDMEIAALGGEQAGIWGSARAAVMRRGGRNEKGGREDMK 418
            IVL+NDADAAL+AE W GAARG   VVMLTLGTGIGVA+ L+GQ WSGSRGLVEGGHMVVEK GR CGCGQ GCLEMY SA+AV RRAEE+GF+ +R K  +   G  G    +G ++  E     S + +++ Q +       ++DGD      A       K VF+AA +      P D LA+QVVEE ADYLGLGCLNLCRV+DP L+LFAGGMSGAGP  + MVK +F  +GW ILP+DVD ++A LGG+  G+WG+ARAA +R  G+ ++   ++ K
Sbjct:   26 IVLLNDADAALSAEMWAGAARGQLGVVMLTLGTGIGVALALNGQVWSGSRGLVEGGHMVVEKGGRACGCGQLGCLEMYVSASAVKRRAEELGFKKKRVKASDR--GKTGCLRVSGDDKTVENRKERSAKIDIERQAKDDIGSSHRRDGDSEEESEADEVPFTSKDVFEAALSLGRNYPPPDSLALQVVEEVADYLGLGCLNLCRVVDPCLILFAGGMSGAGPLFLDMVKARFNFYGWRILPNDVDFKVATLGGDSVGVWGAARAASLRVRGKEDENISKEKK 305
The following BLAST results are available for this feature:
BLAST of NO02G05640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30065.16.000e-7154.96glucokinase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05640NO02G05640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05640.1NO02G05640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05640.1.cds1NO02G05640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05640.1 ID=NO02G05640.1|Name=NO02G05640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1281bp
ATGAGCGTGCATTACGTCCTGGGTATTGATATGGGCGGAACCGCGGCCAA
GTTGGGATTAATTCCCCTGGCCACACTCCTCGAGACTCTTCCTTCAGCAG
CCTCCTCCTCCTCATCCTCCTCCTCGTGCCCAACCCCACCCCTTCCACCG
CCGCCATTCCTGCACCGGGTGCCATTGCCCAAGTATCGATCAGAGCGCAC
GCCCACGACTATTGTGACCTTGCTAGTCGATGCATGCAGGGATTTGCTGT
CTCAGGGGGGCGTAAGATGGGAGGAAGTAGCTGCTGTCGGGGTGGGGTTT
CCTGGCCATGTCAACGCAGCCATGGCAGGAGGGGCGGCCAATTTGAGCGA
AGATTGGGAGACAGGCGTGCCGCTCACGGACCTCTTAAAAGAAGGATTCA
GAAGGCATACAGGTGATGGTGGACAAACGACGTTTCTTGAAAACATTCCC
TCCACCATTGTCCTTATCAATGACGCGGATGCTGCACTGGCAGCAGAGGC
ATGGGGTGGGGCTGCACGAGGTCACAAAGACGTCGTCATGCTCACATTAG
GAACAGGGATTGGAGTAGCTGTATGGCTGCATGGACAAGCGTGGTCGGGC
TCAAGGGGCTTGGTTGAGGGGGGGCACATGGTGGTGGAGAAGGAGGGGAG
AAAGTGTGGGTGCGGCCAAAGGGGATGCTTGGAGATGTACGCGTCGGCGA
CGGCGGTGGTGCGGCGAGCCGAGGAAGTGGGATTTCAGATGAGAAGATCA
AAAGTAAGGGAAGAGAGGGGCGGCGACAAAGGGGAGGCAGGAACTGCTGG
AGGAGAAAGAGAACACGAAGGAGGGACGACTGTATCACTAAGGGAAGAGG
TAGATGGGCAAAGAGAGCAAGCAAAAAAAGACGGAGACCAAAATGGTGTC
CTGAATGCCAAGCGCGTTTTTGATGCGGCCTTCGCTTCTCCATCTGACCC
TCTGGCTATGCAAGTGGTGGAGGAAGCAGCTGATTACCTGGGCTTGGGGT
GTTTGAATTTATGTAGGGTGCTCGACCCCTCGCTTGTTTTGTTTGCGGGC
GGGATGAGTGGGGCAGGGCCTCGGCTGGTGGCTATGGTGAAGGAAAAGTT
TGTGGCCCATGGGTGGAGCATTCTTCCTCATGACGTTGATATGGAAATAG
CGGCCTTGGGTGGGGAGCAGGCGGGAATCTGGGGGTCGGCGCGGGCGGCG
GTTATGAGGAGGGGAGGGAGAAATGAGAAAGGAGGACGAGAGGACATGAA
ATGGAATGGGCCATTTTCAAAATCAAAATGA
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protein sequence of NO02G05640.1

>NO02G05640.1-protein ID=NO02G05640.1-protein|Name=NO02G05640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=427bp
MSVHYVLGIDMGGTAAKLGLIPLATLLETLPSAASSSSSSSSCPTPPLPP
PPFLHRVPLPKYRSERTPTTIVTLLVDACRDLLSQGGVRWEEVAAVGVGF
PGHVNAAMAGGAANLSEDWETGVPLTDLLKEGFRRHTGDGGQTTFLENIP
STIVLINDADAALAAEAWGGAARGHKDVVMLTLGTGIGVAVWLHGQAWSG
SRGLVEGGHMVVEKEGRKCGCGQRGCLEMYASATAVVRRAEEVGFQMRRS
KVREERGGDKGEAGTAGGEREHEGGTTVSLREEVDGQREQAKKDGDQNGV
LNAKRVFDAAFASPSDPLAMQVVEEAADYLGLGCLNLCRVLDPSLVLFAG
GMSGAGPRLVAMVKEKFVAHGWSILPHDVDMEIAALGGEQAGIWGSARAA
VMRRGGRNEKGGREDMKWNGPFSKSK*
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mRNA from alignment at chr2:1497786..1499066+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05640.1 ID=NO02G05640.1|Name=NO02G05640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1281bp|location=Sequence derived from alignment at chr2:1497786..1499066+ (Nannochloropsis oceanica)
ATGAGCGTGCATTACGTCCTGGGTATTGATATGGGCGGAACCGCGGCCAA
GTTGGGATTAATTCCCCTGGCCACACTCCTCGAGACTCTTCCTTCAGCAG
CCTCCTCCTCCTCATCCTCCTCCTCGTGCCCAACCCCACCCCTTCCACCG
CCGCCATTCCTGCACCGGGTGCCATTGCCCAAGTATCGATCAGAGCGCAC
GCCCACGACTATTGTGACCTTGCTAGTCGATGCATGCAGGGATTTGCTGT
CTCAGGGGGGCGTAAGATGGGAGGAAGTAGCTGCTGTCGGGGTGGGGTTT
CCTGGCCATGTCAACGCAGCCATGGCAGGAGGGGCGGCCAATTTGAGCGA
AGATTGGGAGACAGGCGTGCCGCTCACGGACCTCTTAAAAGAAGGATTCA
GAAGGCATACAGGTGATGGTGGACAAACGACGTTTCTTGAAAACATTCCC
TCCACCATTGTCCTTATCAATGACGCGGATGCTGCACTGGCAGCAGAGGC
ATGGGGTGGGGCTGCACGAGGTCACAAAGACGTCGTCATGCTCACATTAG
GAACAGGGATTGGAGTAGCTGTATGGCTGCATGGACAAGCGTGGTCGGGC
TCAAGGGGCTTGGTTGAGGGGGGGCACATGGTGGTGGAGAAGGAGGGGAG
AAAGTGTGGGTGCGGCCAAAGGGGATGCTTGGAGATGTACGCGTCGGCGA
CGGCGGTGGTGCGGCGAGCCGAGGAAGTGGGATTTCAGATGAGAAGATCA
AAAGTAAGGGAAGAGAGGGGCGGCGACAAAGGGGAGGCAGGAACTGCTGG
AGGAGAAAGAGAACACGAAGGAGGGACGACTGTATCACTAAGGGAAGAGG
TAGATGGGCAAAGAGAGCAAGCAAAAAAAGACGGAGACCAAAATGGTGTC
CTGAATGCCAAGCGCGTTTTTGATGCGGCCTTCGCTTCTCCATCTGACCC
TCTGGCTATGCAAGTGGTGGAGGAAGCAGCTGATTACCTGGGCTTGGGGT
GTTTGAATTTATGTAGGGTGCTCGACCCCTCGCTTGTTTTGTTTGCGGGC
GGGATGAGTGGGGCAGGGCCTCGGCTGGTGGCTATGGTGAAGGAAAAGTT
TGTGGCCCATGGGTGGAGCATTCTTCCTCATGACGTTGATATGGAAATAG
CGGCCTTGGGTGGGGAGCAGGCGGGAATCTGGGGGTCGGCGCGGGCGGCG
GTTATGAGGAGGGGAGGGAGAAATGAGAAAGGAGGACGAGAGGACATGAA
ATGGAATGGGCCATTTTCAAAATCAAAATGA
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Coding sequence (CDS) from alignment at chr2:1497786..1499066+

>NO02G05640.1 ID=NO02G05640.1|Name=NO02G05640.1|organism=Nannochloropsis oceanica|type=CDS|length=1281bp|location=Sequence derived from alignment at chr2:1497786..1499066+ (Nannochloropsis oceanica)
ATGAGCGTGCATTACGTCCTGGGTATTGATATGGGCGGAACCGCGGCCAA
GTTGGGATTAATTCCCCTGGCCACACTCCTCGAGACTCTTCCTTCAGCAG
CCTCCTCCTCCTCATCCTCCTCCTCGTGCCCAACCCCACCCCTTCCACCG
CCGCCATTCCTGCACCGGGTGCCATTGCCCAAGTATCGATCAGAGCGCAC
GCCCACGACTATTGTGACCTTGCTAGTCGATGCATGCAGGGATTTGCTGT
CTCAGGGGGGCGTAAGATGGGAGGAAGTAGCTGCTGTCGGGGTGGGGTTT
CCTGGCCATGTCAACGCAGCCATGGCAGGAGGGGCGGCCAATTTGAGCGA
AGATTGGGAGACAGGCGTGCCGCTCACGGACCTCTTAAAAGAAGGATTCA
GAAGGCATACAGGTGATGGTGGACAAACGACGTTTCTTGAAAACATTCCC
TCCACCATTGTCCTTATCAATGACGCGGATGCTGCACTGGCAGCAGAGGC
ATGGGGTGGGGCTGCACGAGGTCACAAAGACGTCGTCATGCTCACATTAG
GAACAGGGATTGGAGTAGCTGTATGGCTGCATGGACAAGCGTGGTCGGGC
TCAAGGGGCTTGGTTGAGGGGGGGCACATGGTGGTGGAGAAGGAGGGGAG
AAAGTGTGGGTGCGGCCAAAGGGGATGCTTGGAGATGTACGCGTCGGCGA
CGGCGGTGGTGCGGCGAGCCGAGGAAGTGGGATTTCAGATGAGAAGATCA
AAAGTAAGGGAAGAGAGGGGCGGCGACAAAGGGGAGGCAGGAACTGCTGG
AGGAGAAAGAGAACACGAAGGAGGGACGACTGTATCACTAAGGGAAGAGG
TAGATGGGCAAAGAGAGCAAGCAAAAAAAGACGGAGACCAAAATGGTGTC
CTGAATGCCAAGCGCGTTTTTGATGCGGCCTTCGCTTCTCCATCTGACCC
TCTGGCTATGCAAGTGGTGGAGGAAGCAGCTGATTACCTGGGCTTGGGGT
GTTTGAATTTATGTAGGGTGCTCGACCCCTCGCTTGTTTTGTTTGCGGGC
GGGATGAGTGGGGCAGGGCCTCGGCTGGTGGCTATGGTGAAGGAAAAGTT
TGTGGCCCATGGGTGGAGCATTCTTCCTCATGACGTTGATATGGAAATAG
CGGCCTTGGGTGGGGAGCAGGCGGGAATCTGGGGGTCGGCGCGGGCGGCG
GTTATGAGGAGGGGAGGGAGAAATGAGAAAGGAGGACGAGAGGACATGAA
ATGGAATGGGCCATTTTCAAAATCAAAATGA
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Synonyms
Publications