NO02G05630.2, NO02G05630.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05630.2
Unique NameNO02G05630.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2956
Alignment locationchr2:1494615..1497779 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1494615..1497779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO02G05630.2 vs.
Match: EWM30163.1 (zinc finger matrin-type protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 354.8 bits (909), Expect = 2.100e-94
Identity = 185/233 (79.40%), Postives = 209/233 (89.70%), Query Frame = 0 
Query:    1 MADEEHSKKSKKPSGALNVERRTWDIEHFQEVAKERLEKEASGESEKKKPGFVRKREEFQSAEQGAAGPEGSKRAYLKHREADLGLEDKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGFSMRVERVGVDRVKERLGALKRREEERRNAGPRESAIKIYERKLEEEGAVKEQWKEARKEARRKITQRAAEDDGEGGQEE---DDEMAAMMGFGGF 231
            MAD+E  KK K P+GALNVERRTWD+EHF+++AKERLEKEASG+ EKKKPGFVRKREEFQ+AE GAAGPEGSKRAYLKHREADLGLE+KVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALG+SMRVERVGVDRVKERL ALKRRE+E++ AGPRESAI  Y++KLE++ A+K QWKEARKEAR  + QRA +++    +EE   D EMAA+MGFGGF
Sbjct:    1 MADDEQKKK-KIPTGALNVERRTWDLEHFEKIAKERLEKEASGDVEKKKPGFVRKREEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRREDEKKKAGPRESAIDAYQKKLEKDEAIKAQWKEARKEARINVIQRATKEEESTVEEEGGVDPEMAALMGFGGF 232
The following BLAST results are available for this feature:
BLAST of NO02G05630.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30163.12.100e-9479.40zinc finger matrin-type protein 2 [Nannochloropsis... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05630NO02G05630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05630.2NO02G05630.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05630.2.cds1NO02G05630.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05630.2.cds2NO02G05630.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05630.2 ID=NO02G05630.2|Name=NO02G05630.2|organism=Nannochloropsis oceanica|type=mRNA|length=2956bp
GAAAAAGGGAGGGTTGACGCCGCTCGGAACATTTGTTTGGGAGCGGAGCG
AACGAGGAGGCCTGTCCCTCGTGCCTTCGACAGGCGGTCATATCAACCAC
ATTACGCCCGCATGATGCCTCGTATTTCGAGCACTTACTCATATAAGCAG
CTCCTTGCCAATCCCTTCTTCGTACACAGACAGCTACGCTTCGTGGTTCT
CGTATTTTGCTCGCGGCTGTTTCATATAGTCATCATCGACGCAAGCCAGC
CCGCCAGCCCTCGCTCCAAAACTTCCCACCACAACTCAAGGAACCCATGG
CTGACGAAGAGCATAGCAAGAAGTCCAAGAAGCCCTCGGGTGCATTAAAT
GTGGAGCGTCGGACGTGGGACATTGAGCACTTTCAGGAAGTGGCCAAGGA
ACGCCTGGAGAAGGAGGCTTCTGGGGAAAGCGAGAAGAAAAAGCCAGGTT
TCGTACGGAAACGCGAAGAATTTCAATCGGCAGAGCAGGGGGCGGCGGGA
CCCGAAGGCTCTAAGCGTGCTTACCTCAAGCATCGTGAAGCGGACTTGGG
GTTGGAAGATAAGGTCGGCAAAATCCAAGTTGTCACGGGTAGCTCCGCCC
CACATCAACAGGGGGGATATTGGTGTGATATTTGTCAGTGTTTGTTGAAG
GATTCAATGGCATATTTGGATCATATTAATGGAAAGAAGCATCAAAAGGC
ATTAGGGTTTAGTATGCGGGTTGAGAGAGTGGGGGTGGATCGTGTGAAGG
AAAGGCTTGGGGCCTTGAAACGACGGGAAGAAGAGAGGAGGAATGCTGGG
CCGAGAGAGAGTGCGATTAAGATTTACGAGCGGAAGTTGGAGGAGGAAGG
GGCGGTGAAGGAGCAATGGAAGGAGGCCAGAAAGGAGGCGCGAAGGAAGA
TTACCCAGCGGGCGGCGGAGGACGACGGGGAGGGAGGACAAGAAGAGGAT
GACGAGATGGCGGCTATGATGGGCTTTGGTGGGTTTGGAGGAAAATAGGT
AGGAACATGGGGTGGGTGAGAGGGTTTTTGATGTGTACATATGTTTGATT
GGTGGGAAGGGCTGCCAGAGAGGCAGGAAATCGCAAGTATCAAAAAAAAA
AAGCACACACAACGTAGACAGGCAGCAATGGCATAAAGGGGGAAAACACG
ATGGCACAGAGTACTATATTCTTTTTTTTTCGAAGAACTTTTATCAATGT
GTCGGCATTCGTTGGACACGAAGTAACTCCTAAGAAACTTTCTAGTGCAA
AGTCTAACAAGCGACTGCTCTTAGCGGAGTATGCGTGTAGTCAAGAACAT
GGTATGTGATCTTGAAAATTGACAGTGCTCTTCCTCTTTTCCACCCAAGA
CCTATTGAAGATGAACGGAAGGTATTAAGATGTGCAAGAGCCCAAGCACA
AAGTTGACGCAGACTGTCCTGTAATGTTTTTGGGATAGGGTACTTTTTGA
TGCCTTACAAGGTGGAGGAAGAAGAGCAGGAAGAAAACAAAAGGTGAGGG
AGGGACCAGGTGGGGCGCTCGATCCCGAAGTGCACACTTTTCCGACATTA
TTCGGAGAAGAGGAGAAATCGCTCCTGGTATAATGGAAGAGATGGGAGGG
CGCGTGTGCCATGAAGGAGAAGATCGACGGCATCCGGGGAAGTATTGCAG
CGTTAGAGAAATGGGCGTTGCGGATCGGGGAAAGAGTTGGAGCCTGCAAC
GGGACATTAAGAGAGTAACCAAGGCTCGGTATCGCGCAAATGCAAAAGGC
AGCATGATGGTAAGTGATATCCATTTCGAGACGATCGCCTTTCTCTTTCG
ACGCTTACGTTGTCATAGCTCCGAAATAGGGTGTTGGGAGGAAGTTGGAG
GGGAGAAGTGCTCTGACAGCAGGGGCCAAGGAGACGATGCGTTTCCAACG
ACACACTCTCTTCAACCAGCGTATTGTTTGACAAGTATGAATCTTTTCTG
ATCGCATGAGGCTTTTATCACGCCCGGTGTGCGTGAGGGGTGTAGGTGGA
TGAAGGAAAAGGACTGGTTGGATGGATAGGGGGAGGGGCTGGTGGGTGAG
AGGCTGGAGAGTATCAGTGGGAAAGGCGATTGCAAATGCCACGCAAGCAG
GCGGCACATACGCTTTTTCCAGGCTCCTTTTTCACTTCTCTGTCCCCGCG
GTACTGCCTCCAACGTAGTGTGACGTGACGGCTTCCTGCATATCTTTATT
AGCGTAATTGTGGGTGTGGTTGGGAGTGGGTGAGTGTGGAGTATAAGTGA
TAGATGCAATGAGCAATTGTAACTGCCACGCGAGGGGGGCGGCACATATG
CTTTTCCCCGCCTCCTTTTTCACTCCTCTATCCTCGCGGTACGGTTCCCA
TTGTAAGATGGCCTGTGCTCTTGTAGATGTGGGTGTGGGTGTGGGGGGAT
GGGGAGTATCAGTGTGTGAGCGAATGCAAATGCTACGCAAGTCGGCGGCA
CGTACGCTTGGTGCTGTCGCCGAGAGGCTGGCGCAACCTGTGTGAGACTC
TAAGCTGAAGAGGAAAGAAGTACTGCCTAGTCACACACAATTTTAACAGA
GCAACAAGTAATTGACATATTTAAGTATGGAACCCAGGCCGGGGGATGCA
TGCAGCCCGAATGCAGCGGCTCAACGAAGGCGAGCACACAACGCATGTCG
CTGTAAGTACGGCTGCTCCTGGGGGAAATTTTCGCCTGCGGGAGTCTGAC
ATTATTTTCTTTGCGCTGTGCGGTATGACATCTGCGAATGTTTGCGGTGC
CATGATGCATTTCTTATAGGGCAACATGGTTGTCAAGAAGTGAGTGCAAT
TTTGATCGCGCCTTGGGTCTTTCTCAAGTGATGAACAGTCCCAAGATCGC
CTTTTCGGGTTGTGGGCGACGGTCAGGGTGGATGGGATGGACCACCACGG
GAGGTCGAGGCCATGTTCTTCTCCTCTCATTTTCCGAACCAATACACCAA
TCGAGA
back to top

protein sequence of NO02G05630.2

>NO02G05630.2-protein ID=NO02G05630.2-protein|Name=NO02G05630.2|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MADEEHSKKSKKPSGALNVERRTWDIEHFQEVAKERLEKEASGESEKKKP
GFVRKREEFQSAEQGAAGPEGSKRAYLKHREADLGLEDKVGKIQVVTGSS
APHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGFSMRVERVGVDRV
KERLGALKRREEERRNAGPRESAIKIYERKLEEEGAVKEQWKEARKEARR
KITQRAAEDDGEGGQEEDDEMAAMMGFGGFGGK*
back to top

mRNA from alignment at chr2:1494615..1497779+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05630.2 ID=NO02G05630.2|Name=NO02G05630.2|organism=Nannochloropsis oceanica|type=mRNA|length=3165bp|location=Sequence derived from alignment at chr2:1494615..1497779+ (Nannochloropsis oceanica)
GAAAAAGGGAGGGTTGACGCCGCTCGGAACATTTGTTTGGGAGCGGAGCG
AACGAGGAGGCCTGTCCCTCGTGCCTTCGACAGGCGGTCATATCAACCAC
ATTACGCCCGCATGATGCCTCGTATTTCGAGCACTTACTCATATAAGCAG
CTCCTTGCCAATCCCTTCTTCGTACACAGACAGCTACGCTTCGTGGTTCT
CGTATTTTGCTCGCGGCTGTTTCATATAGTCATCATCGACGCAAGCCAGC
CCGCCAGCCCTCGCTCCAAAACTTCCCACCACAACTCAAGGAACCCATGG
CTGACGAAGAGCATAGCAAGAAGTCCAAGAAGCCCTCGGGTGCATTAAAT
GTGGAGCGTCGGACGTGGGACATTGAGCACTTTCAGGAAGTGGCCAAGGA
ACGCCTGGAGAAGGTATGTAGCAGCGCGGGTAGTCCTGCCCACGTTGGCC
TCTTCTTTACCCTTTTTCTCCTCCACCCTACTAACCATCCCATCTCACTT
TGCCACTTCATTATGCTCAACATTAATGCCCTGTCTTGTTATGTGCGCAG
CCTCAGTCCTTTTCCTTCTTCAACCTCCACTCACCCCACCGCACCGCACC
GCACACACCGCGCAAATAACAGGAGGCTTCTGGGGAAAGCGAGAAGAAAA
AGCCAGGTTTCGTACGGAAACGCGAAGAATTTCAATCGGCAGAGCAGGGG
GCGGCGGGACCCGAAGGCTCTAAGCGTGCTTACCTCAAGCATCGTGAAGC
GGACTTGGGGTTGGAAGATAAGGTCGGCAAAATCCAAGTTGTCACGGGTA
GCTCCGCCCCACATCAACAGGGGGGATATTGGTGTGATATTTGTCAGTGT
TTGTTGAAGGATTCAATGGCATATTTGGATCATATTAATGGAAAGAAGCA
TCAAAAGGCATTAGGGTTTAGTATGCGGGTTGAGAGAGTGGGGGTGGATC
GTGTGAAGGAAAGGCTTGGGGCCTTGAAACGACGGGAAGAAGAGAGGAGG
AATGCTGGGCCGAGAGAGAGTGCGATTAAGATTTACGAGCGGAAGTTGGA
GGAGGAAGGGGCGGTGAAGGAGCAATGGAAGGAGGCCAGAAAGGAGGCGC
GAAGGAAGATTACCCAGCGGGCGGCGGAGGACGACGGGGAGGGAGGACAA
GAAGAGGATGACGAGATGGCGGCTATGATGGGCTTTGGTGGGTTTGGAGG
AAAATAGGTAGGAACATGGGGTGGGTGAGAGGGTTTTTGATGTGTACATA
TGTTTGATTGGTGGGAAGGGCTGCCAGAGAGGCAGGAAATCGCAAGTATC
AAAAAAAAAAAGCACACACAACGTAGACAGGCAGCAATGGCATAAAGGGG
GAAAACACGATGGCACAGAGTACTATATTCTTTTTTTTTCGAAGAACTTT
TATCAATGTGTCGGCATTCGTTGGACACGAAGTAACTCCTAAGAAACTTT
CTAGTGCAAAGTCTAACAAGCGACTGCTCTTAGCGGAGTATGCGTGTAGT
CAAGAACATGGTATGTGATCTTGAAAATTGACAGTGCTCTTCCTCTTTTC
CACCCAAGACCTATTGAAGATGAACGGAAGGTATTAAGATGTGCAAGAGC
CCAAGCACAAAGTTGACGCAGACTGTCCTGTAATGTTTTTGGGATAGGGT
ACTTTTTGATGCCTTACAAGGTGGAGGAAGAAGAGCAGGAAGAAAACAAA
AGGTGAGGGAGGGACCAGGTGGGGCGCTCGATCCCGAAGTGCACACTTTT
CCGACATTATTCGGAGAAGAGGAGAAATCGCTCCTGGTATAATGGAAGAG
ATGGGAGGGCGCGTGTGCCATGAAGGAGAAGATCGACGGCATCCGGGGAA
GTATTGCAGCGTTAGAGAAATGGGCGTTGCGGATCGGGGAAAGAGTTGGA
GCCTGCAACGGGACATTAAGAGAGTAACCAAGGCTCGGTATCGCGCAAAT
GCAAAAGGCAGCATGATGGTAAGTGATATCCATTTCGAGACGATCGCCTT
TCTCTTTCGACGCTTACGTTGTCATAGCTCCGAAATAGGGTGTTGGGAGG
AAGTTGGAGGGGAGAAGTGCTCTGACAGCAGGGGCCAAGGAGACGATGCG
TTTCCAACGACACACTCTCTTCAACCAGCGTATTGTTTGACAAGTATGAA
TCTTTTCTGATCGCATGAGGCTTTTATCACGCCCGGTGTGCGTGAGGGGT
GTAGGTGGATGAAGGAAAAGGACTGGTTGGATGGATAGGGGGAGGGGCTG
GTGGGTGAGAGGCTGGAGAGTATCAGTGGGAAAGGCGATTGCAAATGCCA
CGCAAGCAGGCGGCACATACGCTTTTTCCAGGCTCCTTTTTCACTTCTCT
GTCCCCGCGGTACTGCCTCCAACGTAGTGTGACGTGACGGCTTCCTGCAT
ATCTTTATTAGCGTAATTGTGGGTGTGGTTGGGAGTGGGTGAGTGTGGAG
TATAAGTGATAGATGCAATGAGCAATTGTAACTGCCACGCGAGGGGGGCG
GCACATATGCTTTTCCCCGCCTCCTTTTTCACTCCTCTATCCTCGCGGTA
CGGTTCCCATTGTAAGATGGCCTGTGCTCTTGTAGATGTGGGTGTGGGTG
TGGGGGGATGGGGAGTATCAGTGTGTGAGCGAATGCAAATGCTACGCAAG
TCGGCGGCACGTACGCTTGGTGCTGTCGCCGAGAGGCTGGCGCAACCTGT
GTGAGACTCTAAGCTGAAGAGGAAAGAAGTACTGCCTAGTCACACACAAT
TTTAACAGAGCAACAAGTAATTGACATATTTAAGTATGGAACCCAGGCCG
GGGGATGCATGCAGCCCGAATGCAGCGGCTCAACGAAGGCGAGCACACAA
CGCATGTCGCTGTAAGTACGGCTGCTCCTGGGGGAAATTTTCGCCTGCGG
GAGTCTGACATTATTTTCTTTGCGCTGTGCGGTATGACATCTGCGAATGT
TTGCGGTGCCATGATGCATTTCTTATAGGGCAACATGGTTGTCAAGAAGT
GAGTGCAATTTTGATCGCGCCTTGGGTCTTTCTCAAGTGATGAACAGTCC
CAAGATCGCCTTTTCGGGTTGTGGGCGACGGTCAGGGTGGATGGGATGGA
CCACCACGGGAGGTCGAGGCCATGTTCTTCTCCTCTCATTTTCCGAACCA
ATACACCAATCGAGA
back to top

Coding sequence (CDS) from alignment at chr2:1494615..1497779+

>NO02G05630.2 ID=NO02G05630.2|Name=NO02G05630.2|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at chr2:1494615..1497779+ (Nannochloropsis oceanica)
ATGGCTGACGAAGAGCATAGCAAGAAGTCCAAGAAGCCCTCGGGTGCATT
AAATGTGGAGCGTCGGACGTGGGACATTGAGCACTTTCAGGAAGTGGCCA
AGGAACGCCTGGAGAAGGAGGCTTCTGGGGAAAGCGAGAAGAAAAAGCCA
GGTTTCGTACGGAAACGCGAAGAATTTCAATCGGCAGAGCAGGGGGCGGC
GGGACCCGAAGGCTCTAAGCGTGCTTACCTCAAGCATCGTGAAGCGGACT
TGGGGTTGGAAGATAAGGTCGGCAAAATCCAAGTTGTCACGGGTAGCTCC
GCCCCACATCAACAGGGGGGATATTGGTGTGATATTTGTCAGTGTTTGTT
GAAGGATTCAATGGCATATTTGGATCATATTAATGGAAAGAAGCATCAAA
AGGCATTAGGGTTTAGTATGCGGGTTGAGAGAGTGGGGGTGGATCGTGTG
AAGGAAAGGCTTGGGGCCTTGAAACGACGGGAAGAAGAGAGGAGGAATGC
TGGGCCGAGAGAGAGTGCGATTAAGATTTACGAGCGGAAGTTGGAGGAGG
AAGGGGCGGTGAAGGAGCAATGGAAGGAGGCCAGAAAGGAGGCGCGAAGG
AAGATTACCCAGCGGGCGGCGGAGGACGACGGGGAGGGAGGACAAGAAGA
GGATGACGAGATGGCGGCTATGATGGGCTTTGGTGGGTTTGGAGGAAAAT
AG
back to top
Synonyms
Publications