NO02G05620.1, NO02G05620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05620.1
Unique NameNO02G05620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1266
Alignment locationchr2:1493157..1494422 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1493157..1494422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05620.1 vs.
Match: EWM30173.1 (isobutyryl- mitochondrial [Nannochloropsis gaditana])

HSP 1 Score: 654.1 bits (1686), Expect = 3.000e-184
Identity = 326/432 (75.46%), Postives = 373/432 (86.34%), Query Frame = 0 
Query:    1 MSSLLRLSRRCLLSTCSTN---APRRLLLP----------SSSTFSTLPEIATPTCGLDATQLEYFSLAHSFAKNELTPALASEWDSKEIFPVETMQKAAELGFGAVFVREDVGGSGMSRLEGSIVFEALAAGCTSTAAYLTIHSMCGWMLDTFGTEEQRLKWLPKMATMEFFSSYCLTEPNSGSDAGSLSTKAVRDGDSYIINGSKAFISGAGVSDLYLVMCRTGGKGPGGISCVVVEKGTPGLSFGVPEKKMGWKSQPTATVSFEDVRVPIGNLVGKEGEGFKYAMRGLDGGRINIATCSVGAAQACLERTRAYITERKQFGRAVGDNQYVQFKFADMATALVGARLMVREAARMLDRKDPDASAMCAMAKRVATDVAFNVCNDAVQLHGGYGYLKDYHVERYLRDVRVHQILEGTNEIMRVIVARKLLQ 420
            M++ LR  RR + S   T      +R  +P           SS  +TLP+IA PT GLD TQ EYF+LAHSFAKNELTP  A++WDSKEIFPVETM+KAA+LGFGAVFVREDVGGSGMSRLEGS++FEALAAGCTSTAAY+TIHSMCGWMLD+FGTE QR +WLP+MATM+  SSYCLTEPNSGSDA SLSTKAVR+GDSY++NGSKAFISGAGVSD+YLVMCRTG KGP GISC++VEKGT GLSFG PEKK+GWKSQPTATV+F D RVP  NL+G EGEGFKYAM+GLDGGRINIATCSVGAAQAC+E+TRAYI ER+QFG+A+G+NQYVQFKFA+M T++VGARLMVR+AAR+LD KD  A+  CAMAK+VATD AF V NDA+Q+HGGYGYLKDYHVERYLRDVRVHQILEGTNEIM++I+ARKLLQ
Sbjct:    1 MATFLRFPRRFITSPSITKFIAGTKRNRVPYVCIPTLSSIQSSHLATLPDIAAPTLGLDETQCEYFNLAHSFAKNELTPDNAAKWDSKEIFPVETMRKAAQLGFGAVFVREDVGGSGMSRLEGSVIFEALAAGCTSTAAYMTIHSMCGWMLDSFGTEAQRQRWLPRMATMDLLSSYCLTEPNSGSDAVSLSTKAVREGDSYVLNGSKAFISGAGVSDVYLVMCRTGEKGPRGISCILVEKGTEGLSFGAPEKKLGWKSQPTATVTFTDCRVPASNLIGVEGEGFKYAMKGLDGGRINIATCSVGAAQACVEKTRAYIMERRQFGKAIGENQYVQFKFAEMVTSVVGARLMVRQAARLLDAKDSQATVACAMAKKVATDSAFTVINDALQMHGGYGYLKDYHVERYLRDVRVHQILEGTNEIMQIIIARKLLQ 432
The following BLAST results are available for this feature:
BLAST of NO02G05620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30173.13.000e-18475.46isobutyryl- mitochondrial [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05620NO02G05620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05620.1NO02G05620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05620.1.cds1NO02G05620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05620.1 ID=NO02G05620.1|Name=NO02G05620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1266bp
ATGTCTTCCTTACTCCGACTTTCCAGGCGCTGTCTCCTCTCCACCTGCAG
CACCAACGCTCCTCGTCGCCTCTTGCTTCCGTCTTCTTCCACCTTCTCAA
CCTTGCCTGAAATTGCCACACCCACCTGTGGCCTGGACGCGACGCAACTC
GAGTATTTTTCGCTAGCGCACTCGTTTGCCAAGAACGAGTTGACCCCGGC
CCTGGCCTCGGAATGGGACAGCAAGGAAATTTTTCCTGTGGAAACCATGC
AGAAAGCGGCCGAATTAGGATTTGGGGCGGTGTTTGTGAGGGAGGACGTG
GGGGGGAGTGGCATGTCACGGTTGGAAGGGTCAATCGTGTTTGAGGCCTT
GGCTGCAGGATGCACCAGCACAGCGGCGTATTTGACGATTCACTCTATGT
GTGGGTGGATGCTGGACACGTTCGGTACGGAGGAGCAACGCCTGAAGTGG
TTGCCCAAGATGGCGACGATGGAGTTTTTTTCTTCGTATTGTTTGACGGA
ACCCAATAGTGGCAGTGATGCCGGCTCCCTCTCTACCAAGGCAGTGCGGG
ACGGCGATTCCTACATTATAAACGGCAGCAAGGCCTTTATCAGTGGCGCA
GGGGTAAGTGACCTGTACTTGGTAATGTGTCGAACAGGGGGGAAGGGCCC
TGGTGGTATCTCATGCGTGGTGGTGGAGAAAGGAACGCCGGGTTTGTCTT
TTGGGGTACCAGAAAAAAAGATGGGATGGAAGTCGCAGCCGACAGCGACA
GTGAGTTTTGAGGATGTCCGGGTGCCGATAGGTAATTTGGTGGGGAAGGA
GGGAGAGGGTTTTAAATATGCGATGAGAGGGTTGGATGGGGGGAGAATTA
ACATTGCAACTTGTAGTGTGGGGGCGGCGCAGGCGTGTTTGGAGAGGACG
CGGGCGTACATCACGGAAAGGAAGCAGTTTGGGAGGGCTGTGGGTGATAA
TCAGTATGTGCAGTTTAAGTTTGCAGACATGGCGACTGCATTGGTGGGGG
CGCGCTTGATGGTTAGGGAGGCGGCGAGAATGCTTGATCGAAAGGACCCG
GATGCGAGTGCCATGTGCGCGATGGCAAAGAGGGTGGCGACGGACGTGGC
GTTCAACGTATGTAATGACGCTGTTCAGTTGCATGGGGGCTATGGGTATT
TGAAGGATTATCACGTGGAGAGGTACTTGAGAGACGTGAGGGTGCATCAG
ATCTTGGAGGGGACGAATGAGATAATGAGGGTGATTGTGGCGAGGAAGCT
GTTGCAGGGAGAGTAG
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protein sequence of NO02G05620.1

>NO02G05620.1-protein ID=NO02G05620.1-protein|Name=NO02G05620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MSSLLRLSRRCLLSTCSTNAPRRLLLPSSSTFSTLPEIATPTCGLDATQL
EYFSLAHSFAKNELTPALASEWDSKEIFPVETMQKAAELGFGAVFVREDV
GGSGMSRLEGSIVFEALAAGCTSTAAYLTIHSMCGWMLDTFGTEEQRLKW
LPKMATMEFFSSYCLTEPNSGSDAGSLSTKAVRDGDSYIINGSKAFISGA
GVSDLYLVMCRTGGKGPGGISCVVVEKGTPGLSFGVPEKKMGWKSQPTAT
VSFEDVRVPIGNLVGKEGEGFKYAMRGLDGGRINIATCSVGAAQACLERT
RAYITERKQFGRAVGDNQYVQFKFADMATALVGARLMVREAARMLDRKDP
DASAMCAMAKRVATDVAFNVCNDAVQLHGGYGYLKDYHVERYLRDVRVHQ
ILEGTNEIMRVIVARKLLQGE*
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mRNA from alignment at chr2:1493157..1494422-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05620.1 ID=NO02G05620.1|Name=NO02G05620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1266bp|location=Sequence derived from alignment at chr2:1493157..1494422- (Nannochloropsis oceanica)
ATGTCTTCCTTACTCCGACTTTCCAGGCGCTGTCTCCTCTCCACCTGCAG
CACCAACGCTCCTCGTCGCCTCTTGCTTCCGTCTTCTTCCACCTTCTCAA
CCTTGCCTGAAATTGCCACACCCACCTGTGGCCTGGACGCGACGCAACTC
GAGTATTTTTCGCTAGCGCACTCGTTTGCCAAGAACGAGTTGACCCCGGC
CCTGGCCTCGGAATGGGACAGCAAGGAAATTTTTCCTGTGGAAACCATGC
AGAAAGCGGCCGAATTAGGATTTGGGGCGGTGTTTGTGAGGGAGGACGTG
GGGGGGAGTGGCATGTCACGGTTGGAAGGGTCAATCGTGTTTGAGGCCTT
GGCTGCAGGATGCACCAGCACAGCGGCGTATTTGACGATTCACTCTATGT
GTGGGTGGATGCTGGACACGTTCGGTACGGAGGAGCAACGCCTGAAGTGG
TTGCCCAAGATGGCGACGATGGAGTTTTTTTCTTCGTATTGTTTGACGGA
ACCCAATAGTGGCAGTGATGCCGGCTCCCTCTCTACCAAGGCAGTGCGGG
ACGGCGATTCCTACATTATAAACGGCAGCAAGGCCTTTATCAGTGGCGCA
GGGGTAAGTGACCTGTACTTGGTAATGTGTCGAACAGGGGGGAAGGGCCC
TGGTGGTATCTCATGCGTGGTGGTGGAGAAAGGAACGCCGGGTTTGTCTT
TTGGGGTACCAGAAAAAAAGATGGGATGGAAGTCGCAGCCGACAGCGACA
GTGAGTTTTGAGGATGTCCGGGTGCCGATAGGTAATTTGGTGGGGAAGGA
GGGAGAGGGTTTTAAATATGCGATGAGAGGGTTGGATGGGGGGAGAATTA
ACATTGCAACTTGTAGTGTGGGGGCGGCGCAGGCGTGTTTGGAGAGGACG
CGGGCGTACATCACGGAAAGGAAGCAGTTTGGGAGGGCTGTGGGTGATAA
TCAGTATGTGCAGTTTAAGTTTGCAGACATGGCGACTGCATTGGTGGGGG
CGCGCTTGATGGTTAGGGAGGCGGCGAGAATGCTTGATCGAAAGGACCCG
GATGCGAGTGCCATGTGCGCGATGGCAAAGAGGGTGGCGACGGACGTGGC
GTTCAACGTATGTAATGACGCTGTTCAGTTGCATGGGGGCTATGGGTATT
TGAAGGATTATCACGTGGAGAGGTACTTGAGAGACGTGAGGGTGCATCAG
ATCTTGGAGGGGACGAATGAGATAATGAGGGTGATTGTGGCGAGGAAGCT
GTTGCAGGGAGAGTAG
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Coding sequence (CDS) from alignment at chr2:1493157..1494422-

>NO02G05620.1 ID=NO02G05620.1|Name=NO02G05620.1|organism=Nannochloropsis oceanica|type=CDS|length=1266bp|location=Sequence derived from alignment at chr2:1493157..1494422- (Nannochloropsis oceanica)
ATGTCTTCCTTACTCCGACTTTCCAGGCGCTGTCTCCTCTCCACCTGCAG
CACCAACGCTCCTCGTCGCCTCTTGCTTCCGTCTTCTTCCACCTTCTCAA
CCTTGCCTGAAATTGCCACACCCACCTGTGGCCTGGACGCGACGCAACTC
GAGTATTTTTCGCTAGCGCACTCGTTTGCCAAGAACGAGTTGACCCCGGC
CCTGGCCTCGGAATGGGACAGCAAGGAAATTTTTCCTGTGGAAACCATGC
AGAAAGCGGCCGAATTAGGATTTGGGGCGGTGTTTGTGAGGGAGGACGTG
GGGGGGAGTGGCATGTCACGGTTGGAAGGGTCAATCGTGTTTGAGGCCTT
GGCTGCAGGATGCACCAGCACAGCGGCGTATTTGACGATTCACTCTATGT
GTGGGTGGATGCTGGACACGTTCGGTACGGAGGAGCAACGCCTGAAGTGG
TTGCCCAAGATGGCGACGATGGAGTTTTTTTCTTCGTATTGTTTGACGGA
ACCCAATAGTGGCAGTGATGCCGGCTCCCTCTCTACCAAGGCAGTGCGGG
ACGGCGATTCCTACATTATAAACGGCAGCAAGGCCTTTATCAGTGGCGCA
GGGGTAAGTGACCTGTACTTGGTAATGTGTCGAACAGGGGGGAAGGGCCC
TGGTGGTATCTCATGCGTGGTGGTGGAGAAAGGAACGCCGGGTTTGTCTT
TTGGGGTACCAGAAAAAAAGATGGGATGGAAGTCGCAGCCGACAGCGACA
GTGAGTTTTGAGGATGTCCGGGTGCCGATAGGTAATTTGGTGGGGAAGGA
GGGAGAGGGTTTTAAATATGCGATGAGAGGGTTGGATGGGGGGAGAATTA
ACATTGCAACTTGTAGTGTGGGGGCGGCGCAGGCGTGTTTGGAGAGGACG
CGGGCGTACATCACGGAAAGGAAGCAGTTTGGGAGGGCTGTGGGTGATAA
TCAGTATGTGCAGTTTAAGTTTGCAGACATGGCGACTGCATTGGTGGGGG
CGCGCTTGATGGTTAGGGAGGCGGCGAGAATGCTTGATCGAAAGGACCCG
GATGCGAGTGCCATGTGCGCGATGGCAAAGAGGGTGGCGACGGACGTGGC
GTTCAACGTATGTAATGACGCTGTTCAGTTGCATGGGGGCTATGGGTATT
TGAAGGATTATCACGTGGAGAGGTACTTGAGAGACGTGAGGGTGCATCAG
ATCTTGGAGGGGACGAATGAGATAATGAGGGTGATTGTGGCGAGGAAGCT
GTTGCAGGGAGAGTAG
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Synonyms
Publications