NO02G05610.1, NO02G05610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05610.1
Unique NameNO02G05610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length870
Alignment locationchr2:1490476..1492222 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1490476..1492222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05610.1 vs.
Match: EWM30159.1 (phosphomannomutase [Nannochloropsis gaditana])

HSP 1 Score: 456.4 bits (1173), Expect = 6.400e-125
Identity = 228/294 (77.55%), Postives = 252/294 (85.71%), Query Frame = 0 
Query:    1 MLTRPF-RAAFILPILSSCAPTRSSAITSIRSILTTGTTFK----RMPPANPRIIALFDVDGTLTPARKDITPETAAFIKKLREKITIGVVGGSDFPKQKEQLGETVLEDFDYSFSENGLVAYHKGKQIGHTSINDHLGEENIKAIVNWTLRYLSDLDIPIKRGTFIEYRTGMLNISPIGRNCNREERNAFEVMDLENGVRKTMVEKMRKKFANLDLTFSIGGQISFDLFPKGWDKTYCLRYLAEGDFDEVHFFGDKTFEGGNDHEIFVHPRVIGHTVTCPEDTVKQLRELFFR 290
            ML RPF    F+LPILSSC PT  SAI   RS+ TT +T       M PANPRIIALFDVDGTLTPARK I P T A +KKLREKITIGVVGGSDF KQ EQLG TVL DFDYSFSENGLVAYH+G QIGHTS+N HLGEENIKAIVNWTLRYLSDLDIPIKRGTFIEYRTGMLNISPIGRNC++EER+AFEVMDL+ G+RKT++EKMR+KFA+LDLT+SIGGQISFD+FPKGWDKTYCL+YL E  FDE+HFFGDKTFEGGND EI+ HPRV+GH+V  PE+TVKQL ELF +
Sbjct:   21 MLARPFCTIPFVLPILSSCTPT--SAIVLGRSVATTTSTPSILRDGMAPANPRIIALFDVDGTLTPARKVIEPATIACLKKLREKITIGVVGGSDFRKQMEQLGPTVLTDFDYSFSENGLVAYHEGIQIGHTSMNAHLGEENIKAIVNWTLRYLSDLDIPIKRGTFIEYRTGMLNISPIGRNCSQEERDAFEVMDLQKGIRKTLLEKMREKFAHLDLTYSIGGQISFDVFPKGWDKTYCLKYLPENSFDEIHFFGDKTFEGGNDFEIYTHPRVMGHSVKNPEETVKQLEELFLK 312
The following BLAST results are available for this feature:
BLAST of NO02G05610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30159.16.400e-12577.55phosphomannomutase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05610NO02G05610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05610.1NO02G05610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05610.1.cds1NO02G05610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05610.1.cds2NO02G05610.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05610.1.cds3NO02G05610.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05610.1.cds4NO02G05610.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05610.1.cds5NO02G05610.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05610.1 ID=NO02G05610.1|Name=NO02G05610.1|organism=Nannochloropsis oceanica|type=mRNA|length=870bp
ATGCTCACGCGTCCCTTCCGTGCTGCTTTTATATTGCCCATCTTGTCGTC
GTGCGCGCCTACCCGTAGCTCCGCAATAACCTCCATACGCTCCATCCTCA
CAACCGGCACGACTTTTAAAAGAATGCCTCCCGCCAACCCCAGAATCATC
GCTCTTTTCGACGTGGATGGCACGCTCACCCCCGCCCGCAAAGACATAAC
CCCCGAAACCGCCGCATTCATCAAGAAACTCCGGGAGAAAATCACCATTG
GGGTGGTGGGCGGCTCAGATTTCCCCAAGCAAAAAGAACAACTCGGCGAG
ACCGTCCTTGAAGACTTCGATTACTCCTTCTCCGAGAATGGGTTGGTCGC
CTACCACAAGGGTAAGCAGATCGGCCATACCTCCATCAATGACCACTTGG
GGGAAGAAAACATCAAGGCGATTGTGAACTGGACGCTGCGATACCTCTCG
GATCTGGACATTCCCATCAAGCGCGGAACATTCATTGAGTACCGGACAGG
GATGCTCAATATCTCCCCCATTGGCCGTAACTGCAACAGAGAGGAGCGCA
ATGCCTTCGAGGTGATGGACCTAGAGAATGGTGTCCGCAAGACAATGGTG
GAGAAGATGCGCAAGAAGTTTGCTAATTTAGACCTGACCTTTTCGATCGG
GGGCCAGATCTCTTTTGATTTGTTTCCCAAGGGCTGGGATAAAACGTATT
GCCTCAGGTATCTCGCGGAAGGCGATTTTGACGAGGTACATTTCTTTGGG
GACAAGACGTTCGAGGGCGGGAACGACCACGAGATTTTTGTGCACCCGCG
CGTGATTGGCCACACGGTGACATGCCCGGAGGACACGGTGAAGCAATTGA
GGGAGTTGTTTTTTAGGTAA
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protein sequence of NO02G05610.1

>NO02G05610.1-protein ID=NO02G05610.1-protein|Name=NO02G05610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MLTRPFRAAFILPILSSCAPTRSSAITSIRSILTTGTTFKRMPPANPRII
ALFDVDGTLTPARKDITPETAAFIKKLREKITIGVVGGSDFPKQKEQLGE
TVLEDFDYSFSENGLVAYHKGKQIGHTSINDHLGEENIKAIVNWTLRYLS
DLDIPIKRGTFIEYRTGMLNISPIGRNCNREERNAFEVMDLENGVRKTMV
EKMRKKFANLDLTFSIGGQISFDLFPKGWDKTYCLRYLAEGDFDEVHFFG
DKTFEGGNDHEIFVHPRVIGHTVTCPEDTVKQLRELFFR*
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mRNA from alignment at chr2:1490476..1492222-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05610.1 ID=NO02G05610.1|Name=NO02G05610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1747bp|location=Sequence derived from alignment at chr2:1490476..1492222- (Nannochloropsis oceanica)
ATGCTCACGCGTCCCTTCCGTGCTGCTTTTATATTGCCCATCTTGTCGTC
GTGCGCGCCTACCCGTAGCTCCGCAATAACCTCCATACGGTAAGACAACA
CCAATGATTGGCCGTTCCCCCCTTCCAGCGCCTACCCTTCTTCGTAGTCC
CTACGTGCGCTCTATCATCCAATCGCGCAATGGCCATCCTCGGTCAAAAG
CTCCGTCCTTTGTATGCACTTAGCCAGCAAGCATCCCTCTACATCGATCG
AAACCAAACGTAACACTCCCTTCCTCATCCCTCACCCTCCCTCCTCCCTC
CTACCCCTCCCCTCTGTCTAGCTCCATCCTCACAACCGGCACGACTTTTA
AAAGAATGCCTCCCGCCAACCCCAGAATCATCGCTCTTTTCGACGTGGAT
GGCACGCTCACCCCCGCCCGCAAAGACATAACCCCCGAAACCGCCGCATT
CATCAAGAAACTCCGGGAGAAAATCACCATTGGGGTGGTGGGCGGCTCAG
ATTTCCCCAAGCAAAAAGAACAACTCGGCGAGACCGTCCTTGAAGACTTC
GATTACTCCTTCTCCGAGAATGGGTTGGTCGCCTACCACAAGGGTAAGCA
GATCGGCCATACCTCCATCAATGACCACTTGGGGGAAGAAAACATCAAGG
CGATTGTGAACTGGACGCTGCGATACCTCTCGGGTAAGTGAAGGAGGGGG
GGAGGGAGGGAGGGAGGGAGGGAGGGGAAGAGGACAGGAAAGTATGGAAT
TCAAATTGTGAGTATGATCTGCCTTATGGTAGACGATTCATGTATAAATT
GCATACCAACTGTCTCCTGCAGCCTGGAAGATTCAAGATTCACGAGCACT
CGATTCCCCTCCCTCTTTCCCTCCTTCTTCCCTCCATTCATTCCTTTCCT
TCCCCTCACTTCCTCCCCGCCCTCCTTTCCCTCCCAACACCAAGATCTGG
ACATTCCCATCAAGCGCGGAACATTCATTGAGTACCGGACAGGGATGCTC
AATATCTCCCCCATTGGCCGTAACTGCAACAGAGAGGAGCGCAATGCCTT
CGAGGTGAAGAGGAGGGAGGAAGGGGTGGGGCACGCTGGTACACCGCTTC
TATTCGACTGACTCTTTTCCTCCCTTCCTCTCTCCTTCCCTCCCTCGCTC
CCTTCCTTTCTCCTTCCTTCCCCCTCTTCTTCTCCTCTCCAGGTGATGGA
CCTAGAGAATGGTGTCCGCAAGACAATGGTGGAGAAGATGCGCAAGAAGT
TTGCTAATTTAGACCTGACCTTTTCGATCGGGGGCCAGATCTCTTTTGAT
TTGTTTCCCAAGGGCTGGGATAAAACGTATTGCCTCAGGTTCGGAGGAGC
GGGGCTGGGGAGGGAAGGAGGGAAGGAGGGATTGTTGGCTGGCTGAGGTA
GACTTGGGGTCTTCGATTGGCGGGCCTATTTCATTAGATAAGGTTAGGTT
AGGTTAGATTCAGATTAAATAAGATCAGATTAGATTAAATTCGATTGGAT
TCGATTCGATTCGATTTGACCAGAGTATTTGCATAATATTACGACATCCT
TCATCGACCTCTTCCTCTTTCCTCCCTTGTTAAGGTATCTCGCGGAAGGC
GATTTTGACGAGGTACATTTCTTTGGGGACAAGACGTTCGAGGGCGGGAA
CGACCACGAGATTTTTGTGCACCCGCGCGTGATTGGCCACACGGTGACAT
GCCCGGAGGACACGGTGAAGCAATTGAGGGAGTTGTTTTTTAGGTAA
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Coding sequence (CDS) from alignment at chr2:1490476..1492222-

>NO02G05610.1 ID=NO02G05610.1|Name=NO02G05610.1|organism=Nannochloropsis oceanica|type=CDS|length=870bp|location=Sequence derived from alignment at chr2:1490476..1492222- (Nannochloropsis oceanica)
ATGCTCACGCGTCCCTTCCGTGCTGCTTTTATATTGCCCATCTTGTCGTC
GTGCGCGCCTACCCGTAGCTCCGCAATAACCTCCATACGCTCCATCCTCA
CAACCGGCACGACTTTTAAAAGAATGCCTCCCGCCAACCCCAGAATCATC
GCTCTTTTCGACGTGGATGGCACGCTCACCCCCGCCCGCAAAGACATAAC
CCCCGAAACCGCCGCATTCATCAAGAAACTCCGGGAGAAAATCACCATTG
GGGTGGTGGGCGGCTCAGATTTCCCCAAGCAAAAAGAACAACTCGGCGAG
ACCGTCCTTGAAGACTTCGATTACTCCTTCTCCGAGAATGGGTTGGTCGC
CTACCACAAGGGTAAGCAGATCGGCCATACCTCCATCAATGACCACTTGG
GGGAAGAAAACATCAAGGCGATTGTGAACTGGACGCTGCGATACCTCTCG
GATCTGGACATTCCCATCAAGCGCGGAACATTCATTGAGTACCGGACAGG
GATGCTCAATATCTCCCCCATTGGCCGTAACTGCAACAGAGAGGAGCGCA
ATGCCTTCGAGGTGATGGACCTAGAGAATGGTGTCCGCAAGACAATGGTG
GAGAAGATGCGCAAGAAGTTTGCTAATTTAGACCTGACCTTTTCGATCGG
GGGCCAGATCTCTTTTGATTTGTTTCCCAAGGGCTGGGATAAAACGTATT
GCCTCAGGTATCTCGCGGAAGGCGATTTTGACGAGGTACATTTCTTTGGG
GACAAGACGTTCGAGGGCGGGAACGACCACGAGATTTTTGTGCACCCGCG
CGTGATTGGCCACACGGTGACATGCCCGGAGGACACGGTGAAGCAATTGA
GGGAGTTGTTTTTTAGGTAA
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Synonyms
Publications