NO02G05540.1, NO02G05540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05540.1
Unique NameNO02G05540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1848
Alignment locationchr2:1475104..1477102 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1475104..1477102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05540.1 vs.
Match: CBN79150.1 (similar to putative mitochondrial rna splicing protein OR magnesium ion transporter Mrs2 [Ectocarpus siliculosus])

HSP 1 Score: 190.3 bits (482), Expect = 1.800e-44
Identity = 160/482 (33.20%), Postives = 252/482 (52.28%), Query Frame = 0 
Query:  126 AVEGKQQPAISSRVWARLSGGVSGTEANERKNTQESKPPPTPSQSSSSMTPLSPSVVAASTPSAVPTPSMPASAKTASSPGPPLPPPLPPQQQQQPHRQQSQPSSLPSIPHIPPFSSTPAIT--VPASPASSSSLPRFLDVVSIYANGTTIQRQVRKSELAVELRCPTRDLRLLDTSFPSSIATVLARKNAIVLRMDCLRCVIRRDELILFDPFSKDALALVPLLQQQLATVAALTAAAGKGGATALSPFELLSLEAVLANVCHTMHERLQMVSPHIMRILGDLKFRHGTLSSFPKLLDELLPLRNDLSELHYTVQELRKALNDVLLSDEDMEMMYLSQPYKIHLPSSSSPSPSPSSSLSMGQRSSKHHRGGGGTDESHQEIEMMFENYLMQLEWADTEIREVQHAIRNTEDTVEIQLDLLRNRILRFELVLNIVTSVVSFGCLVTGLFGMNLLSGMEAHPSAFYVVAVVGGVTMAAVLALA 606
            A + K+   +  R  AR+ GGV   + +          PP    ++    P +P    A+T          +  +T+SS  PP            P  + S+ S+ P +      SS P +   +PA P + SS  R + V+ + ++G  I+  + + +LA EL CP RDLR+ D +FP    +VLAR+ +I+  +  ++ VI  +E++LF P   D L++VP +Q+++           + G  A+ PFE   +E  L +VC  + E  + V P +  +L   K    + +S  K L  LLPL+N+L EL  T+  + K +N+VL++DEDM +MYL+             +   S++  + Q               HQEIEM+FENYL+Q+E   +++ E+Q+ +RNTE+ VEI+LD+LRN ILRFEL+L+I    V+ G LVTG+FGMNLLSG E  P  F+   V GG+    +L++A
Sbjct:    2 AADRKRHWTVVHRRIARIRGGVDSNDGDR---------PPLDPPTNPRAVPTNPR---ATTTQKSFADRFQSPGETSSSRDPP------------PLGEHSEASATPLVA-----SSAPLLQEGLPAGPVNPSS--RSVPVLRLSSDGAAIETALSRQQLAAELTCPLRDLRMADPTFPGQFPSVLARRGSIIFSVGEVKAVILSNEVLLF-PTKPDVLSIVPAVQEKI-----------RLGIRAV-PFEQTVMECCLKHVCKDLLESARNVEPRLRTVLDSFK---TSKNSLIKSLHRLLPLKNELDELKETLVTVCKCMNEVLMNDEDMALMYLTD------------NECKSTARDLHQ---------------HQEIEMLFENYLLQVELLASDVIELQNEVRNTEEIVEIELDVLRNNILRFELLLSISGFTVALGALVTGVFGMNLLSGWEEKPQTFW--QVTGGIYGCIMLSIA 407
The following BLAST results are available for this feature:
BLAST of NO02G05540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN79150.11.800e-4433.20similar to putative mitochondrial rna splicing pro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05540NO02G05540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05540.1NO02G05540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05540.1.cds1NO02G05540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05540.1.cds2NO02G05540.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05540.1 ID=NO02G05540.1|Name=NO02G05540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1848bp
ATGAAAAGAAGAAGACCGTCAGCCATCGGCGCCCGAGCACTCCGGGCCCT
TGTTTTACTGCTCCTTGGCCTCATCGTTATCATAGCCGCCGACGGCCCAG
CAGGGGACTTTCATCACTCAGCTCCATGGCAGCCAGCCCCCACGAGTCTA
CATATAGAGCGTGCCCGTGCGCCTCGAAGACTGCCTTACTGGCGACTTGC
AGCTCGTGGTGGTGATGGTAGGGCGGGTTGGCGAGGCGCGGACAAAGAGA
CCTTGCCACTTGGAGGGGTCCGCGGTGGGGCCATCTTTCATCGGAACAAG
AACAACAACACCACGCCCGCCAGTCCCACCAAAGCTGCAGCTGCGTTGCG
ACATGACCAGCAAGGGATACCAGAGGCCGTCGAAGGGAAACAGCAGCCGG
CGATCTCCTCCCGAGTGTGGGCTCGCCTGAGTGGTGGAGTTTCAGGAACG
GAAGCGAACGAGAGGAAAAACACTCAGGAATCCAAACCGCCACCGACACC
CTCACAATCATCATCATCAATGACGCCCCTATCACCATCGGTAGTAGCAG
CTTCTACACCCTCGGCAGTGCCTACTCCCTCTATGCCTGCTTCTGCCAAG
ACGGCGTCCTCGCCAGGACCACCCCTCCCGCCGCCGCTGCCGCCGCAGCA
GCAACAGCAACCTCATCGGCAGCAATCACAACCATCCTCCCTACCGTCGA
TACCTCATATACCCCCTTTTTCCTCAACTCCAGCAATTACAGTTCCAGCT
TCACCAGCAAGCAGCAGCAGCCTCCCTCGTTTCCTGGACGTGGTCAGTAT
ATACGCTAATGGAACAACTATACAGCGACAAGTCCGAAAATCTGAACTGG
CGGTCGAACTTCGGTGCCCAACGCGGGACTTGCGCCTGCTCGATACCTCT
TTCCCTAGCAGTATTGCCACGGTCTTGGCACGAAAAAATGCGATTGTATT
GAGGATGGATTGTTTGCGGTGTGTGATTCGACGGGATGAACTGATCCTTT
TTGACCCCTTCAGCAAGGACGCCCTTGCGCTTGTCCCGCTCCTTCAACAG
CAACTTGCCACAGTTGCAGCGCTGACAGCCGCGGCTGGAAAAGGTGGGGC
TACTGCTTTGTCCCCTTTCGAGTTATTGTCATTGGAGGCAGTGTTGGCGA
ATGTCTGTCATACGATGCATGAACGTTTGCAGATGGTCTCGCCGCATATC
ATGAGGATATTAGGGGACCTCAAATTTAGACATGGCACCTTATCTTCATT
CCCTAAGCTTCTAGATGAGTTGTTGCCCCTTCGAAATGACCTGAGTGAGC
TCCATTATACTGTGCAGGAGCTACGGAAGGCCTTGAATGATGTTTTGCTC
TCGGATGAAGATATGGAGATGATGTATTTGAGTCAGCCTTATAAAATTCA
CCTTCCTTCTTCTTCCTCCCCCTCGCCCTCCCCCAGTTCCTCGTTGTCGA
TGGGGCAACGCTCATCGAAGCACCATCGGGGGGGAGGGGGAACGGATGAG
AGCCACCAGGAGATTGAGATGATGTTTGAGAACTATTTGATGCAATTAGA
GTGGGCGGACACGGAAATAAGAGAAGTGCAGCACGCGATTCGCAACACGG
AGGACACTGTGGAGATCCAGCTTGATTTACTCAGAAATCGGATTTTGAGG
TTTGAGTTAGTTCTAAATATCGTCACGAGTGTCGTGTCATTTGGATGTTT
GGTCACGGGCCTTTTCGGCATGAATCTCTTGTCCGGGATGGAGGCACATC
CGTCTGCTTTTTATGTCGTTGCCGTGGTTGGGGGGGTGACGATGGCGGCG
GTATTGGCCTTGGCGTTCATTTATGGGGTACGATCGAACATTTTCTAG
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protein sequence of NO02G05540.1

>NO02G05540.1-protein ID=NO02G05540.1-protein|Name=NO02G05540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=616bp
MKRRRPSAIGARALRALVLLLLGLIVIIAADGPAGDFHHSAPWQPAPTSL
HIERARAPRRLPYWRLAARGGDGRAGWRGADKETLPLGGVRGGAIFHRNK
NNNTTPASPTKAAAALRHDQQGIPEAVEGKQQPAISSRVWARLSGGVSGT
EANERKNTQESKPPPTPSQSSSSMTPLSPSVVAASTPSAVPTPSMPASAK
TASSPGPPLPPPLPPQQQQQPHRQQSQPSSLPSIPHIPPFSSTPAITVPA
SPASSSSLPRFLDVVSIYANGTTIQRQVRKSELAVELRCPTRDLRLLDTS
FPSSIATVLARKNAIVLRMDCLRCVIRRDELILFDPFSKDALALVPLLQQ
QLATVAALTAAAGKGGATALSPFELLSLEAVLANVCHTMHERLQMVSPHI
MRILGDLKFRHGTLSSFPKLLDELLPLRNDLSELHYTVQELRKALNDVLL
SDEDMEMMYLSQPYKIHLPSSSSPSPSPSSSLSMGQRSSKHHRGGGGTDE
SHQEIEMMFENYLMQLEWADTEIREVQHAIRNTEDTVEIQLDLLRNRILR
FELVLNIVTSVVSFGCLVTGLFGMNLLSGMEAHPSAFYVVAVVGGVTMAA
VLALAFIYGVRSNIF*
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mRNA from alignment at chr2:1475104..1477102-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05540.1 ID=NO02G05540.1|Name=NO02G05540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1999bp|location=Sequence derived from alignment at chr2:1475104..1477102- (Nannochloropsis oceanica)
ATGAAAAGAAGAAGACCGTCAGCCATCGGCGCCCGAGCACTCCGGGCCCT
TGTTTTACTGCTCCTTGGCCTCATCGTTATCATAGCCGCCGACGGCCCAG
CAGGGGACTTTCATCACTCAGCTCCATGGCAGCCAGCCCCCACGAGTCTA
CATATAGAGCGTGCCCGTGCGCCTCGAAGACTGCCTTACTGGCGACTTGC
AGCTCGTGGTGGTGATGGTAGGGCGGGTTGGCGAGGCGCGGACAAAGAGA
CCTTGCCACTTGGAGGGGTCCGCGGTGGGGCCATCTTTCATCGGAACAAG
AACAACAACACCACGCCCGCCAGTCCCACCAAAGCTGCAGCTGCGTTGCG
ACATGACCAGCAAGGGATACCAGAGGCCGTCGAAGGGAAACAGCAGCCGG
CGATCTCCTCCCGAGTGTGGGCTCGCCTGAGTGGTGGAGTTTCAGGAACG
GAAGCGAACGAGAGGAAAAACACTCAGGAATCCAAACCGCCACCGACACC
CTCACAATCATCATCATCAATGACGCCCCTATCACCATCGGTAGTAGCAG
CTTCTACACCCTCGGCAGTGCCTACTCCCTCTATGCCTGCTTCTGCCAAG
ACGGCGTCCTCGCCAGGACCACCCCTCCCGCCGCCGCTGCCGCCGCAGCA
GCAACAGCAACCTCATCGGCAGCAATCACAACCATCCTCCCTACCGTCGA
TACCTCATATACCCCCTTTTTCCTCAACTCCAGCAATTACAGTTCCAGCT
TCACCAGCAAGCAGCAGCAGCCTCGTCAGCTATACATCAACCACCACGCC
CCCCCCTCCCCCCTCCCCCCCTCCTCGCCGCCACCGCTGCTGCCGCCGCC
TTACTTTCAGCCAATAACAATGCCCAATACGGCAACGGAATCTTCCTCCC
CCTCCCAACCGTCACTCCCCCAAAGCCTCGTTTCCTGGACGTGGTCAGTA
TATACGCTAATGGAACAACTATACAGCGACAAGTCCGAAAATCTGAACTG
GCGGTCGAACTTCGGTGCCCAACGCGGGACTTGCGCCTGCTCGATACCTC
TTTCCCTAGCAGTATTGCCACGGTCTTGGCACGAAAAAATGCGATTGTAT
TGAGGATGGATTGTTTGCGGTGTGTGATTCGACGGGATGAACTGATCCTT
TTTGACCCCTTCAGCAAGGACGCCCTTGCGCTTGTCCCGCTCCTTCAACA
GCAACTTGCCACAGTTGCAGCGCTGACAGCCGCGGCTGGAAAAGGTGGGG
CTACTGCTTTGTCCCCTTTCGAGTTATTGTCATTGGAGGCAGTGTTGGCG
AATGTCTGTCATACGATGCATGAACGTTTGCAGATGGTCTCGCCGCATAT
CATGAGGATATTAGGGGACCTCAAATTTAGACATGGCACCTTATCTTCAT
TCCCTAAGCTTCTAGATGAGTTGTTGCCCCTTCGAAATGACCTGAGTGAG
CTCCATTATACTGTGCAGGAGCTACGGAAGGCCTTGAATGATGTTTTGCT
CTCGGATGAAGATATGGAGATGATGTATTTGAGTCAGCCTTATAAAATTC
ACCTTCCTTCTTCTTCCTCCCCCTCGCCCTCCCCCAGTTCCTCGTTGTCG
ATGGGGCAACGCTCATCGAAGCACCATCGGGGGGGAGGGGGAACGGATGA
GAGCCACCAGGAGATTGAGATGATGTTTGAGAACTATTTGATGCAATTAG
AGTGGGCGGACACGGAAATAAGAGAAGTGCAGCACGCGATTCGCAACACG
GAGGACACTGTGGAGATCCAGCTTGATTTACTCAGAAATCGGATTTTGAG
GTTTGAGTTAGTTCTAAATATCGTCACGAGTGTCGTGTCATTTGGATGTT
TGGTCACGGGCCTTTTCGGCATGAATCTCTTGTCCGGGATGGAGGCACAT
CCGTCTGCTTTTTATGTCGTTGCCGTGGTTGGGGGGGTGACGATGGCGGC
GGTATTGGCCTTGGCGTTCATTTATGGGGTACGATCGAACATTTTCTAG
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Coding sequence (CDS) from alignment at chr2:1475104..1477102-

>NO02G05540.1 ID=NO02G05540.1|Name=NO02G05540.1|organism=Nannochloropsis oceanica|type=CDS|length=1848bp|location=Sequence derived from alignment at chr2:1475104..1477102- (Nannochloropsis oceanica)
ATGAAAAGAAGAAGACCGTCAGCCATCGGCGCCCGAGCACTCCGGGCCCT
TGTTTTACTGCTCCTTGGCCTCATCGTTATCATAGCCGCCGACGGCCCAG
CAGGGGACTTTCATCACTCAGCTCCATGGCAGCCAGCCCCCACGAGTCTA
CATATAGAGCGTGCCCGTGCGCCTCGAAGACTGCCTTACTGGCGACTTGC
AGCTCGTGGTGGTGATGGTAGGGCGGGTTGGCGAGGCGCGGACAAAGAGA
CCTTGCCACTTGGAGGGGTCCGCGGTGGGGCCATCTTTCATCGGAACAAG
AACAACAACACCACGCCCGCCAGTCCCACCAAAGCTGCAGCTGCGTTGCG
ACATGACCAGCAAGGGATACCAGAGGCCGTCGAAGGGAAACAGCAGCCGG
CGATCTCCTCCCGAGTGTGGGCTCGCCTGAGTGGTGGAGTTTCAGGAACG
GAAGCGAACGAGAGGAAAAACACTCAGGAATCCAAACCGCCACCGACACC
CTCACAATCATCATCATCAATGACGCCCCTATCACCATCGGTAGTAGCAG
CTTCTACACCCTCGGCAGTGCCTACTCCCTCTATGCCTGCTTCTGCCAAG
ACGGCGTCCTCGCCAGGACCACCCCTCCCGCCGCCGCTGCCGCCGCAGCA
GCAACAGCAACCTCATCGGCAGCAATCACAACCATCCTCCCTACCGTCGA
TACCTCATATACCCCCTTTTTCCTCAACTCCAGCAATTACAGTTCCAGCT
TCACCAGCAAGCAGCAGCAGCCTCCCTCGTTTCCTGGACGTGGTCAGTAT
ATACGCTAATGGAACAACTATACAGCGACAAGTCCGAAAATCTGAACTGG
CGGTCGAACTTCGGTGCCCAACGCGGGACTTGCGCCTGCTCGATACCTCT
TTCCCTAGCAGTATTGCCACGGTCTTGGCACGAAAAAATGCGATTGTATT
GAGGATGGATTGTTTGCGGTGTGTGATTCGACGGGATGAACTGATCCTTT
TTGACCCCTTCAGCAAGGACGCCCTTGCGCTTGTCCCGCTCCTTCAACAG
CAACTTGCCACAGTTGCAGCGCTGACAGCCGCGGCTGGAAAAGGTGGGGC
TACTGCTTTGTCCCCTTTCGAGTTATTGTCATTGGAGGCAGTGTTGGCGA
ATGTCTGTCATACGATGCATGAACGTTTGCAGATGGTCTCGCCGCATATC
ATGAGGATATTAGGGGACCTCAAATTTAGACATGGCACCTTATCTTCATT
CCCTAAGCTTCTAGATGAGTTGTTGCCCCTTCGAAATGACCTGAGTGAGC
TCCATTATACTGTGCAGGAGCTACGGAAGGCCTTGAATGATGTTTTGCTC
TCGGATGAAGATATGGAGATGATGTATTTGAGTCAGCCTTATAAAATTCA
CCTTCCTTCTTCTTCCTCCCCCTCGCCCTCCCCCAGTTCCTCGTTGTCGA
TGGGGCAACGCTCATCGAAGCACCATCGGGGGGGAGGGGGAACGGATGAG
AGCCACCAGGAGATTGAGATGATGTTTGAGAACTATTTGATGCAATTAGA
GTGGGCGGACACGGAAATAAGAGAAGTGCAGCACGCGATTCGCAACACGG
AGGACACTGTGGAGATCCAGCTTGATTTACTCAGAAATCGGATTTTGAGG
TTTGAGTTAGTTCTAAATATCGTCACGAGTGTCGTGTCATTTGGATGTTT
GGTCACGGGCCTTTTCGGCATGAATCTCTTGTCCGGGATGGAGGCACATC
CGTCTGCTTTTTATGTCGTTGCCGTGGTTGGGGGGGTGACGATGGCGGCG
GTATTGGCCTTGGCGTTCATTTATGGGGTACGATCGAACATTTTCTAG
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Synonyms
Publications