NO02G05510.1, NO02G05510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05510.1
Unique NameNO02G05510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length697
Alignment locationchr2:1465114..1465946 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1465114..1465946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05510.1 vs.
Match: SHO79978.1 (Hypothetical protein MSYG_4333 [Malassezia sympodialis ATCC 42132])

HSP 1 Score: 62.8 bits (151), Expect = 8.200e-7
Identity = 37/52 (71.15%), Postives = 40/52 (76.92%), Query Frame = 0 
Query:   64 MPGRDGGKAKPLKAPKKAAKEMTEEDLAFKAKQKADAAATKKAAEALKGKKK 116
            M GR GGK KPLKAPKK  KE+ E+DLAFK KQK +AAA K A E LKGKKK
Sbjct:    1 MSGRQGGKLKPLKAPKKTNKELDEDDLAFKQKQKEEAAAKKAAIEKLKGKKK 52
The following BLAST results are available for this feature:
BLAST of NO02G05510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
SHO79978.18.200e-771.15Hypothetical protein MSYG_4333 [Malassezia sympodi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05510NO02G05510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05510.1NO02G05510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05510.1.cds1NO02G05510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05510.1.cds2NO02G05510.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05510.1 ID=NO02G05510.1|Name=NO02G05510.1|organism=Nannochloropsis oceanica|type=mRNA|length=697bp
CCTCAAAAAGCTTTTTGAGGGGTTGCGAACACAGCCTCTATTGAAGCGCG
GCAACTCGAAAGGGAGAAATTGTGGCGATGATGACGCCTTGCTCTTCGGA
CGAGCCTTGTCCTTAAAAGCGCACGACCACAGACCATGAAAGCCACCATG
CTCCTGTAACGTGTTGCATGAGGGTTACAGGTTTCCCGGTGCAGGAGATG
ACAGCACAGTCCTCCGCTTGCTTTCCACCCTACCCTCACCCACTTTCTTT
CCCCCCTACCATGTCTACGCGCCATCCACTCACACCATACGACCCCACAC
GGGCACCACCCACAGGCACCGCCGCCAGCAGCAGTATTTCTAGATCAAGT
TCACTCATGCCAGGTCGCGATGGTGGCAAGGCCAAGCCCTTGAAGGCACC
CAAGAAGGCAGCCAAGGAGATGACCGAGGAAGACTTGGCTTTCAAGGCCA
AGCAGAAGGCGGATGCCGCGGCCACAAAGAAGGCGGCGGAGGCGCTCAAG
GGCAAGAAAAAATAAAAAGAGAGTGAGGAGCTAGATTTGTGCCAGTGAAA
GAGGAGGAAAAGATGAGCGACCATACGTAGCACTGAATGCAGCCTGGCCA
GAGGTGGAAACAAGTCTTGAACGAGGAGGACAAGGGGGAAGAAAGATGCC
CTTATATCAAAGTATGAACCAAGGGCGGGACACATCCACAGATCAAG
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protein sequence of NO02G05510.1

>NO02G05510.1-protein ID=NO02G05510.1-protein|Name=NO02G05510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=116bp
MRVTGFPVQEMTAQSSACFPPYPHPLSFPPTMSTRHPLTPYDPTRAPPTG
TAASSSISRSSSLMPGRDGGKAKPLKAPKKAAKEMTEEDLAFKAKQKADA
AATKKAAEALKGKKK*
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mRNA from alignment at chr2:1465114..1465946-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05510.1 ID=NO02G05510.1|Name=NO02G05510.1|organism=Nannochloropsis oceanica|type=mRNA|length=833bp|location=Sequence derived from alignment at chr2:1465114..1465946- (Nannochloropsis oceanica)
CCTCAAAAAGCTTTTTGAGGGGTTGCGAACACAGCCTCTATTGAAGCGCG
GCAACTCGAAAGGGAGAAATTGTGGCGATGATGACGCCTTGCTCTTCGGA
CGAGCCTTGTCCTTAAAAGCGCACGACCACAGACCATGAAAGCCACCATG
CTCCTGTAACGTGTTGCATGAGGGTTACAGGTTTCCCGGTGCAGGAGATG
ACAGCACAGTCCTCCGCTTGCTTTCCACCCTACCCTCACCCACTTTCTTT
CCCCCCTACCATGTCTACGCGCCATCCACTCACACCATACGACCCCACAC
GGGCACCACCCACAGGCACCGCCGCCAGCAGCAGTATTTCTAGATCAAGT
TCACTCATGGTACGTCGCCTGTCTATTCTTGCATATTTGCCAGAATACCC
AGGCCCCTCTCCTCTCCCCCGCAGCCCGGTCCCTACCGACCGGCGACGGC
ACGCCCCATTCTCCTCCATCTCCGCACTCATCGCACCCCACACAGCCAGG
TCGCGATGGTGGCAAGGCCAAGCCCTTGAAGGCACCCAAGAAGGCAGCCA
AGGAGATGACCGAGGAAGACTTGGCTTTCAAGGCCAAGCAGAAGGCGGAT
GCCGCGGCCACAAAGAAGGCGGCGGAGGCGCTCAAGGGCAAGAAAAAATA
AAAAGAGAGTGAGGAGCTAGATTTGTGCCAGTGAAAGAGGAGGAAAAGAT
GAGCGACCATACGTAGCACTGAATGCAGCCTGGCCAGAGGTGGAAACAAG
TCTTGAACGAGGAGGACAAGGGGGAAGAAAGATGCCCTTATATCAAAGTA
TGAACCAAGGGCGGGACACATCCACAGATCAAG
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Coding sequence (CDS) from alignment at chr2:1465114..1465946-

>NO02G05510.1 ID=NO02G05510.1|Name=NO02G05510.1|organism=Nannochloropsis oceanica|type=CDS|length=348bp|location=Sequence derived from alignment at chr2:1465114..1465946- (Nannochloropsis oceanica)
ATGAGGGTTACAGGTTTCCCGGTGCAGGAGATGACAGCACAGTCCTCCGC
TTGCTTTCCACCCTACCCTCACCCACTTTCTTTCCCCCCTACCATGTCTA
CGCGCCATCCACTCACACCATACGACCCCACACGGGCACCACCCACAGGC
ACCGCCGCCAGCAGCAGTATTTCTAGATCAAGTTCACTCATGCCAGGTCG
CGATGGTGGCAAGGCCAAGCCCTTGAAGGCACCCAAGAAGGCAGCCAAGG
AGATGACCGAGGAAGACTTGGCTTTCAAGGCCAAGCAGAAGGCGGATGCC
GCGGCCACAAAGAAGGCGGCGGAGGCGCTCAAGGGCAAGAAAAAATAA
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Synonyms
Publications