NO02G05390.1, NO02G05390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05390.1
Unique NameNO02G05390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1256
Alignment locationchr2:1437666..1439100 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1437666..1439100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05390.1 vs.
Match: EWM30155.1 (cyclin-l1 [Nannochloropsis gaditana])

HSP 1 Score: 252.7 bits (644), Expect = 1.700e-63
Identity = 172/349 (49.28%), Postives = 210/349 (60.17%), Query Frame = 0 
Query:   28 VRVLLDAGERLRLPQETIATAVIIFHRFFAKRSLSDHLAKQRMDVVLMTCLFLAAKVEEQPRRIRDAINCVYFAQRRM--QILRTAFTADVAGGNKGDKGGEREVG--KNSGDFRQQDERRHGVATAPQREADAILPLDRGYWEMKESVVDMEQLVLRVLGFDLDTYRPYRILLNYARSLRARPVTVEVAWALLNDSLFSPAFCLTRPSQAQAVAVLHLAQRFLMVQ--EQEEEEEEKKQQQQQQQQQQQQQD-SGTTAGSTSSSNSFKPRKHNFVIKSSIRFRNTS----------------------------GEMPVNRGMWTVLGAKAEDVEACSNDLLALYEEG 342
            VRVLLDAG RLRLPQETIATA +IFHRFFA RSL ++   +R+DVVL TCLFLA+KVEEQPRRIRDAINCVY  ++++  Q   T F    A    GD     E G    +G+     E +     A   + + IL LDRGYW++KESVVD EQLVLR+LGFDL+T+  YR+LLNYARSLRARPV VEVAWALLNDSLFSPA CL  PS AQAVA L LAQR L     +++ E E+    Q+   +    +D +     ST      + +KH F   S+   R  +                            GE+ VN  MW VLGA+ +DV+A  + LL LYEEG
Sbjct:   39 VRVLLDAGRRLRLPQETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVVRKQLLAQAQGTRFVDTCAPSEGGDAETLSERGWVHGNGNGGAPGELKGNTDLARSVKGN-ILSLDRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYARSLRARPVLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRLLTAAGGDRDGENEDGPPGQRGGLKLAIDKDMAPIRETSTGVGGKGQLKKHTFANLSTSTARTVAYSRQGHKSEGRFSQDGKFEPLDFNCHDPGELRVNSRMWNVLGAQGKDVQAWCDSLLHLYEEG 386
The following BLAST results are available for this feature:
BLAST of NO02G05390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30155.11.700e-6349.28cyclin-l1 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05390NO02G05390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05390.1NO02G05390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05390.1.cds1NO02G05390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05390.1.cds2NO02G05390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05390.1 ID=NO02G05390.1|Name=NO02G05390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1256bp
ATGATTTCCGCCGTCGCCTCTGAAGCAGCAGGAACGACAGGCACACGGGC
ATCAGAAAGTAACCTCCTACTGCATAATTGTGTGAGGGTCTTGCTCGACG
CAGGGGAGCGGCTGCGCTTACCACAGGAGACCATCGCTACGGCCGTCATA
ATCTTTCACCGGTTTTTCGCCAAGCGGAGCCTGTCTGATCACCTTGCTAA
ACAACGCATGGACGTGGTGCTCATGACCTGCCTCTTCCTTGCTGCCAAGG
TGGAGGAGCAGCCACGCCGTATTCGGGATGCAATCAATTGTGTCTATTTT
GCGCAGAGGCGAATGCAGATTCTTCGTACTGCCTTTACTGCAGATGTTGC
TGGTGGTAACAAAGGTGACAAAGGGGGGGAAAGAGAAGTAGGGAAGAATA
GTGGAGACTTCCGACAGCAGGACGAAAGAAGACATGGAGTGGCAACAGCA
CCGCAACGGGAAGCAGATGCTATTTTGCCGTTAGACCGCGGGTACTGGGA
AATGAAAGAAAGCGTTGTCGACATGGAGCAGCTTGTCTTGCGTGTCCTGG
GCTTCGACCTTGATACCTATCGACCATACCGCATCCTCCTCAACTATGCC
CGTTCGTTACGTGCACGTCCTGTAACGGTCGAAGTGGCCTGGGCGCTCTT
AAACGATTCCTTGTTCTCGCCTGCCTTTTGCTTGACGAGGCCATCGCAAG
CCCAGGCTGTGGCTGTGCTGCATTTGGCACAGCGGTTTCTAATGGTGCAA
GAGCAGGAAGAGGAGGAAGAAGAGAAGAAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAAGATTCGGGTACAACAGCGGGGAGTACCAGCA
GCAGCAACAGCTTCAAGCCCAGAAAACACAATTTTGTCATTAAGAGCAGC
ATACGCTTCAGAAATACGAGCGGTGAAATGCCGGTCAATCGGGGCATGTG
GACAGTGCTGGGAGCAAAGGCTGAAGATGTCGAAGCTTGTAGTAACGATC
TCCTGGCGTTGTATGAGGAGGGGATCGAGCCTTCTTTTGAGAGGGGATAA
ATGGGTATGGAGGGTGAAGAAAGATATGAGGAGGAGGGAGGAAATAGCGT
GGTGGTATGGGGGGGGGTCACTGGAGGCAAGAGGCCTTGGGCAAGCAAAG
GCCGCGCGGTGCGAAGTAAAAGCGTGTATATAAATAATGTAAAAGGCTTG
AATCGGTAATATAGGGCAAAAATAATGCACAGAGATTGTTTGGAGAAAAA
AGGAGA
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protein sequence of NO02G05390.1

>NO02G05390.1-protein ID=NO02G05390.1-protein|Name=NO02G05390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
MISAVASEAAGTTGTRASESNLLLHNCVRVLLDAGERLRLPQETIATAVI
IFHRFFAKRSLSDHLAKQRMDVVLMTCLFLAAKVEEQPRRIRDAINCVYF
AQRRMQILRTAFTADVAGGNKGDKGGEREVGKNSGDFRQQDERRHGVATA
PQREADAILPLDRGYWEMKESVVDMEQLVLRVLGFDLDTYRPYRILLNYA
RSLRARPVTVEVAWALLNDSLFSPAFCLTRPSQAQAVAVLHLAQRFLMVQ
EQEEEEEEKKQQQQQQQQQQQQQDSGTTAGSTSSSNSFKPRKHNFVIKSS
IRFRNTSGEMPVNRGMWTVLGAKAEDVEACSNDLLALYEEGIEPSFERG*
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mRNA from alignment at chr2:1437666..1439100+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05390.1 ID=NO02G05390.1|Name=NO02G05390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1435bp|location=Sequence derived from alignment at chr2:1437666..1439100+ (Nannochloropsis oceanica)
ATGATTTCCGCCGTCGCCTCTGAAGCAGCAGGAACGACAGGCACACGGGC
ATCAGAAAGTAACCTCCTACTGCATAATTGTGTGAGGGTCTTGCTCGACG
CAGGGGAGCGGCTGCGCTTACCACAGGTGCGTGCACACATTTTATTGAGT
ATTAATCTAGCGCATCCTATTGCCTGAATCTGCCCTTCAGATACCTCGAT
GGTGTCTGTCTTTCCTATGCTCCTCCTTCCCCTGCCCAATCCTTTCCATC
TCCCCACCCCGACTCCCAATGCCTCACTCCACCATCATCCGTCTCCTTCC
CACAGGAGACCATCGCTACGGCCGTCATAATCTTTCACCGGTTTTTCGCC
AAGCGGAGCCTGTCTGATCACCTTGCTAAACAACGCATGGACGTGGTGCT
CATGACCTGCCTCTTCCTTGCTGCCAAGGTGGAGGAGCAGCCACGCCGTA
TTCGGGATGCAATCAATTGTGTCTATTTTGCGCAGAGGCGAATGCAGATT
CTTCGTACTGCCTTTACTGCAGATGTTGCTGGTGGTAACAAAGGTGACAA
AGGGGGGGAAAGAGAAGTAGGGAAGAATAGTGGAGACTTCCGACAGCAGG
ACGAAAGAAGACATGGAGTGGCAACAGCACCGCAACGGGAAGCAGATGCT
ATTTTGCCGTTAGACCGCGGGTACTGGGAAATGAAAGAAAGCGTTGTCGA
CATGGAGCAGCTTGTCTTGCGTGTCCTGGGCTTCGACCTTGATACCTATC
GACCATACCGCATCCTCCTCAACTATGCCCGTTCGTTACGTGCACGTCCT
GTAACGGTCGAAGTGGCCTGGGCGCTCTTAAACGATTCCTTGTTCTCGCC
TGCCTTTTGCTTGACGAGGCCATCGCAAGCCCAGGCTGTGGCTGTGCTGC
ATTTGGCACAGCGGTTTCTAATGGTGCAAGAGCAGGAAGAGGAGGAAGAA
GAGAAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGA
TTCGGGTACAACAGCGGGGAGTACCAGCAGCAGCAACAGCTTCAAGCCCA
GAAAACACAATTTTGTCATTAAGAGCAGCATACGCTTCAGAAATACGAGC
GGTGAAATGCCGGTCAATCGGGGCATGTGGACAGTGCTGGGAGCAAAGGC
TGAAGATGTCGAAGCTTGTAGTAACGATCTCCTGGCGTTGTATGAGGAGG
GGATCGAGCCTTCTTTTGAGAGGGGATAAATGGGTATGGAGGGTGAAGAA
AGATATGAGGAGGAGGGAGGAAATAGCGTGGTGGTATGGGGGGGGGTCAC
TGGAGGCAAGAGGCCTTGGGCAAGCAAAGGCCGCGCGGTGCGAAGTAAAA
GCGTGTATATAAATAATGTAAAAGGCTTGAATCGGTAATATAGGGCAAAA
ATAATGCACAGAGATTGTTTGGAGAAAAAAGGAGA
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Coding sequence (CDS) from alignment at chr2:1437666..1439100+

>NO02G05390.1 ID=NO02G05390.1|Name=NO02G05390.1|organism=Nannochloropsis oceanica|type=CDS|length=1050bp|location=Sequence derived from alignment at chr2:1437666..1439100+ (Nannochloropsis oceanica)
ATGATTTCCGCCGTCGCCTCTGAAGCAGCAGGAACGACAGGCACACGGGC
ATCAGAAAGTAACCTCCTACTGCATAATTGTGTGAGGGTCTTGCTCGACG
CAGGGGAGCGGCTGCGCTTACCACAGGAGACCATCGCTACGGCCGTCATA
ATCTTTCACCGGTTTTTCGCCAAGCGGAGCCTGTCTGATCACCTTGCTAA
ACAACGCATGGACGTGGTGCTCATGACCTGCCTCTTCCTTGCTGCCAAGG
TGGAGGAGCAGCCACGCCGTATTCGGGATGCAATCAATTGTGTCTATTTT
GCGCAGAGGCGAATGCAGATTCTTCGTACTGCCTTTACTGCAGATGTTGC
TGGTGGTAACAAAGGTGACAAAGGGGGGGAAAGAGAAGTAGGGAAGAATA
GTGGAGACTTCCGACAGCAGGACGAAAGAAGACATGGAGTGGCAACAGCA
CCGCAACGGGAAGCAGATGCTATTTTGCCGTTAGACCGCGGGTACTGGGA
AATGAAAGAAAGCGTTGTCGACATGGAGCAGCTTGTCTTGCGTGTCCTGG
GCTTCGACCTTGATACCTATCGACCATACCGCATCCTCCTCAACTATGCC
CGTTCGTTACGTGCACGTCCTGTAACGGTCGAAGTGGCCTGGGCGCTCTT
AAACGATTCCTTGTTCTCGCCTGCCTTTTGCTTGACGAGGCCATCGCAAG
CCCAGGCTGTGGCTGTGCTGCATTTGGCACAGCGGTTTCTAATGGTGCAA
GAGCAGGAAGAGGAGGAAGAAGAGAAGAAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAAGATTCGGGTACAACAGCGGGGAGTACCAGCA
GCAGCAACAGCTTCAAGCCCAGAAAACACAATTTTGTCATTAAGAGCAGC
ATACGCTTCAGAAATACGAGCGGTGAAATGCCGGTCAATCGGGGCATGTG
GACAGTGCTGGGAGCAAAGGCTGAAGATGTCGAAGCTTGTAGTAACGATC
TCCTGGCGTTGTATGAGGAGGGGATCGAGCCTTCTTTTGAGAGGGGATAA
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Synonyms
Publications