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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:1431924..1434702 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G05350.2 vs.
Match: EWM30142.1 (tyrosine-specific transport [Nannochloropsis gaditana]) HSP 1 Score: 384.8 bits (987), Expect = 3.800e-103 Identity = 244/419 (58.23%), Postives = 292/419 (69.69%), Query Frame = 0
Query: 33 MRPSCLTTMTTATAMLLAPLLFLAPRTLCATAFLSAFPSSS---ASLLTTSSPFSTGSSLTQARGKAMNNLLTKRGGAMFFQKRAGGGSVDVQ--PLTDVEGVTSSPKQLQQQQQPPAPPTFMEEVTDVLSSFQYTPTTTTSTTTEIVPSSQDDIDGDGDEILAVTSVPKEDSEPLTLTSAIALVAGTTVGAGILALPAFTVKSGFLPSSLSLTGAWLYMVTTGLLIAEVNLNLAGKSHRPDGGLVSMARRTIGSTGAAATGAAYLFLHYALLVAYIAQGGEILTSGLEGLLGLLGVGAGEGVTVPSQLAPVLFTATLGGALAFGNKKWLDSANDVLVGVVVLTFVGLVGLAAPRANPAALLQADWGATLSSIPVMFVALVFHNIVPVISYRLKGDVDKIRTSVVVGSGIPLLMFLVCN 447
+R S + TA++L L L AF+SA SS A TTS+ + + GK + G +FFQKR GG +VDVQ P+ DV+ S KQ ++Q++ P TF+ V++ L+ F + + I + E ++ + EDSEPLTLTSAIALVAGTTVGAGILALPAFT+K+GFLPSSL L+ AW+YMVTTGLLIAEVNLN+AGKSH+PDGGLVSMARRTIG TGA TGAAY+FLHYALLVAYIAQGG+ILT LEG LG G G+ V +P+Q+APVLFTA LGGALAFGNKKWLDSAND LVGVVV+ F+ LV A PRA+P L++A+W A L SIPVMFVALV+HNIVPVISYRL+GD DKIRTS+VVGSGIPLLMFL N
Sbjct: 14 IRSSVSKATPSITALVLKLSLSLGLLVSGTDAFVSAASLSSVPPAGRATTSTGLIIRTRGGDSTGK-------RNVGPLFFQKRVGG-AVDVQDPPVLDVQ--ESLDKQEEEQRRAP---TFIRAVSERLTRFNPASSDRSDAMAMIETAMPVAESRQRTEDRSLPTTEPEDSEPLTLTSAIALVAGTTVGAGILALPAFTIKAGFLPSSLCLSAAWVYMVTTGLLIAEVNLNVAGKSHQPDGGLVSMARRTIGDTGANLTGAAYMFLHYALLVAYIAQGGDILTGALEGAGAALGFGGGDAVVLPAQVAPVLFTAVLGGALAFGNKKWLDSANDALVGVVVVAFLALVAAAGPRADPGGLMRANWTAMLPSIPVMFVALVYHNIVPVISYRLRGDADKIRTSIVVGSGIPLLMFLAWN 419
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G05350.2 ID=NO02G05350.2|Name=NO02G05350.2|organism=Nannochloropsis oceanica|type=mRNA|length=2461bp
ACAGGTTCATTAGTTTATGCAATCCAGAGGACCTGCTGGCGGTTCCAGGA
GCCGCAAAGCAAGCAAGAAAGCAGCCATGGCGTGCTCCACTTCCTCAGCT
CGATCCCAATATATGCGACCCTCTTGCTTGACCACCATGACTACGGCGAC
CGCAATGCTATTGGCGCCCTTACTGTTCCTAGCTCCACGCACCCTATGCG
CCACGGCCTTCCTCTCGGCCTTTCCCTCGTCGTCAGCATCTTTGTTGACA
ACCTCCTCCCCATTTTCCACTGGCTCCTCCCTGACCCAAGCCCGAGGCAA
GGCCATGAACAATTTACTCACAAAAAGAGGGGGCGCTATGTTTTTTCAAA
AGCGGGCAGGAGGAGGGTCGGTGGATGTGCAGCCACTAACTGATGTTGAG
GGAGTTACTTCATCGCCCAAGCAGCTGCAGCAGCAGCAGCAGCCTCCAGC
CCCACCAACGTTCATGGAGGAGGTCACCGACGTGCTTAGCAGCTTCCAGT
ACACCCCCACCACCACCACCAGCACAACTACTGAAATAGTACCATCATCC
CAAGATGACATTGATGGTGATGGTGACGAGATTCTGGCCGTAACTTCAGT
CCCCAAGGAAGACTCCGAGCCCCTCACTCTAACCAGCGCCATCGCCCTGG
TTGCCGGGACTACTGTGGGAGCGGGCATTTTGGCCTTGCCCGCATTTACC
GTAAAATCAGGCTTTCTCCCCTCCTCCCTCAGCTTGACTGGTGCTTGGCT
TTACATGGTCACGACGGGGTTGCTCATTGCGGAGGTGAACTTGAATTTGG
CGGGGAAGAGTCATCGGCCGGATGGAGGGCTTGTGAGCATGGCCAGGCGG
ACGATTGGGTCCACGGGGGCAGCGGCGACGGGCGCGGCTTATTTGTTTTT
GCATTATGCCCTGTTGGTGGCATATATCGCACAGGGCGGGGAGATACTGA
CCTCGGGGTTGGAGGGGTTGTTGGGCCTGCTAGGCGTAGGAGCGGGGGAG
GGGGTCACCGTGCCGAGTCAGCTGGCGCCCGTGTTGTTCACCGCCACACT
AGGGGGGGCATTGGCGTTTGGGAACAAGAAGTGGCTGGACTCGGCGAATG
ATGTCTTGGTTGGAGTGGTGGTGCTGACGTTCGTGGGGTTGGTAGGGCTG
GCAGCACCGAGGGCGAACCCGGCGGCGCTGTTGCAGGCGGATTGGGGGGC
AACGCTGAGCTCCATCCCGGTCATGTTTGTGGCACTGGTGTTCCATAATA
TTGTGCCGGTCATCAGCTATCGCCTCAAGGGCGATGTGGACAAGATCCGT
ACCTCTGTCGTCGTCGGGTCGGGCATCCCCCTACTCATGTTCCTGGTGTG
CAACCCTTCCTCCCACCCTCCCTCCTCCACAAGCTCCCTTCTTCCTTTAT
CTCTTTCGTTTTAAAGCAAAACAAAACTCACCATACGCCATTGTGCACTC
ATCATTTCCTCTTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCTACTCTT
TCTCGTTGCCTCCTTCCTTTAGGCTTGGAACGCCGTCGTTCTCGGGAACA
TCGACTCCTCCGTCCTAACCTCCTCCTCCTCCTCCTCTTCCTCCGTCCCG
GTGGACCCACTAGCCTTGCTGCGCGCAGGAGGCGCTGGGGATGGGCTAGG
GAGGTTGATTTCTGTCTTTTCCGAAGTGGCCATTGTCACCAGCTTCACGG
GGTTCGTCTATGGCCTCAAAGATTTCCTCAAGGACGTCTTATTCTCCCGC
TCCCTCGCCAAGTCAGGAAATCGCCACCTCTCGCACAAGCAGGATATGCT
CGCCTACAGCTTGATCCTGCTCCCTCCTTTAGCAGTCGCGGTGGTAAGTC
CGGGTATTTTTTTCTCGGCCCTGGACAATGCTGGGGCCTTCGGGATTTGT
GTGTTGTTTGGAATAGTGCCCGCGGCCATGGCGTCGATTGTACGGTGGAG
GAGCGAGGGAGGGGGGAAGGCAGGGATGGATAACGAGGAAGAGTACTTGA
GCTTGGTTCCAGGGGGAAATGTGGTGTTGGCGGGGGTGGGAGTGATTGCG
GCGTTTGTGATTGTTCAGAAGGCCATGCAGCTGTTGGGGTAAGGGTAGGG
GAAGGGGGAAAGGACGGAGGGAGGGAATGGCGTTTGTATATAGCGATTTA
AATTGAACAAAAGAAGGGGGGGAGGGCGGGAAGCAGGCAGAGAAGGAGGG
AGGGCGAGTGGCCGAGAGGGAAGGGGGTGTATTTTGTCCAAATTGGGGAG
TGCGTGTGTAAACTCGAAGTGGAGATGGTAGGATGAGCGAAGGAGACGAA
GAAGAGAAAAAGAAGAAGAGGGGGAATGGAGAAGAGGGGTTAGGAGGCGA
AGAGGGAGGCGTGGAAGAAGGAGGGGGGAGGAGAAGGAGAAGAATGATAA
AGAGAAACAGAAGGAGGAGGAAGAAGTAACGAGACGCGACAATCAGTGTC
TTTTGTTGGTA back to topprotein sequence of NO02G05350.2 >NO02G05350.2-protein ID=NO02G05350.2-protein|Name=NO02G05350.2|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp
MQSRGPAGGSRSRKASKKAAMACSTSSARSQYMRPSCLTTMTTATAMLLA
PLLFLAPRTLCATAFLSAFPSSSASLLTTSSPFSTGSSLTQARGKAMNNL
LTKRGGAMFFQKRAGGGSVDVQPLTDVEGVTSSPKQLQQQQQPPAPPTFM
EEVTDVLSSFQYTPTTTTSTTTEIVPSSQDDIDGDGDEILAVTSVPKEDS
EPLTLTSAIALVAGTTVGAGILALPAFTVKSGFLPSSLSLTGAWLYMVTT
GLLIAEVNLNLAGKSHRPDGGLVSMARRTIGSTGAAATGAAYLFLHYALL
VAYIAQGGEILTSGLEGLLGLLGVGAGEGVTVPSQLAPVLFTATLGGALA
FGNKKWLDSANDVLVGVVVLTFVGLVGLAAPRANPAALLQADWGATLSSI
PVMFVALVFHNIVPVISYRLKGDVDKIRTSVVVGSGIPLLMFLVCNPSSH
PPSSTSSLLPLSLSF* back to topmRNA from alignment at chr2:1431924..1434702+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G05350.2 ID=NO02G05350.2|Name=NO02G05350.2|organism=Nannochloropsis oceanica|type=mRNA|length=2779bp|location=Sequence derived from alignment at chr2:1431924..1434702+ (Nannochloropsis oceanica)
ACAGGTTCATTAGTTTATGCAATCCAGAGGACCTGCTGGCGGTTCCAGGA
GCCGCAAAGCAAGCAAGAAAGCAGCCATGGCGTGCTCCACTTCCTCAGCT
CGATCCCAATATATGCGACCCTCTTGCTTGACCACCATGACTACGGCGAC
CGCAATGCTATTGGCGCCCTTACTGTTCCTAGCTCCACGCACCCTATGCG
CCACGGCCTTCCTCTCGGCCTTTCCCTCGTCGTCAGCATCTTTGTTGACA
ACCTCCTCCCCATTTTCCACTGGCTCCTCCCTGACCCAAGCCCGAGGCAA
GGCCATGAACAATTTACTCACAAAAAGAGGGGGCGCTATGTTTTTTCAAA
AGCGGGCAGGAGGAGGGTCGGTGGATGTGCAGCCACTAACTGATGTTGAG
GGAGTTACTTCATCGCCCAAGCAGCTGCAGCAGCAGCAGCAGCCTCCAGC
CCCACCAACGTTCATGGAGGAGGTCACCGACGTGCTTAGCAGCTTCCAGT
ACACCCCCACCACCACCACCAGCACAACTACTGAAATAGTACCATCATCC
CAAGATGACATTGATGGTGATGGTGACGAGATTCTGGCCGTAACTTCAGT
CCCCAAGGAAGACTCCGAGCCCCTCACTCTAACCAGCGCCATCGCCCTGG
TTGCCGGGACTACTGTGGGAGCGGGCATTTTGGCCTTGCCCGCATTTACC
GTAAAATCAGGCTTTCTCCCCTCCTCCCTCAGCTTGACTGGTGCTTGGCT
TTACATGGTCACGACGGGGTTGCTCATTGCGGAGGTGAACTTGAATTTGG
CGGGGAAGAGTCATCGGCCGGATGGAGGGCTTGTGAGCATGGCCAGGCGG
ACGATTGGGTCCACGGGGGCAGCGGCGACGGGCGCGGCTTATTTGTTTTT
GCATTATGCCCTGTTGGTGGCATATATCGCACAGGGCGGGGAGATACTGA
CCTCGGGGTTGGAGGGGTTGTTGGGCCTGCTAGGCGTAGGAGCGGGGGAG
GGGGTCACCGTGCCGAGTCAGCTGGCGCCCGTGTTGTTCACCGCCACACT
AGGGGGGGCATTGGCGTTTGGGAACAAGAAGTGGCTGGACTCGGCGAATG
ATGTCTTGGTTGGAGTGGTGGTGCTGACGTTCGTGGGGTTGGTAGGGCTG
GCAGCACCGAGGGCGAACCCGGCGGCGCTGTTGCAGGCGGATTGGGGGGC
AACGCTGAGCTCCATCCCGGTCATGTTTGTGGCACTGGTAGGGCGGCGGT
TGGATGGTGTCGGGGTTGAGTAGAAAGTAGAGGGCTTGTCTTCAGTTCCT
CGCCGCCGATACGTCTGGCTACTGCTGATTGGCTTCAACCAACATTTACT
GACCACTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCATCCTCCATT
TTCCCTCCAGGTGTTCCATAATATTGTGCCGGTCATCAGCTATCGCCTCA
AGGGCGATGTGGACAAGATCCGTACCTCTGTCGTCGTCGGGTCGGGCATC
CCCCTACTCATGTTCCTGGTGTGCAACCCTTCCTCCCACCCTCCCTCCTC
CACAAGCTCCCTTCTTCCTTTATCTCTTTCGTTTTAAAGCAAAACAAAAC
TCACCATACGCCATTGTGCACTCATCATTTCCTCTTCCCTCCCTCTCTCC
CTCCCTCCCTCCCTCCTACTCTTTCTCGTTGCCTCCTTCCTTTAGGCTTG
GAACGCCGTCGTTCTCGGGAACATCGACTCCTCCGTCCTAACCTCCTCCT
CCTCCTCCTCTTCCTCCGTCCCGGTGGACCCACTAGCCTTGCTGCGCGCA
GGAGGCGCTGGGGATGGGCTAGGGAGGTTGATTTCTGTCTTTTCCGAAGT
GGCCATTGTCACCAGCTTCACGTGCGTTGGGAGGGAGGGAGTAGTGAGGG
AGGAAGGGAAAGAGTTAAGGTTTCATGGGCATAATGGTTTTCCTTTTCTC
ACGACACACTGCCTTTCCTCCGTCCCTCCCTCCCCCCTTCCCTCCATGCC
TCTCTGCCCGACACAGGGGGTTCGTCTATGGCCTCAAAGATTTCCTCAAG
GACGTCTTATTCTCCCGCTCCCTCGCCAAGTCAGGAAATCGCCACCTCTC
GCACAAGCAGGATATGCTCGCCTACAGCTTGATCCTGCTCCCTCCTTTAG
CAGTCGCGGTGGTAAGTCCGGGTATTTTTTTCTCGGCCCTGGACAATGCT
GGGGCCTTCGGGATTTGTGTGTTGTTTGGAATAGTGCCCGCGGCCATGGC
GTCGATTGTACGGTGGAGGAGCGAGGGAGGGGGGAAGGCAGGGATGGATA
ACGAGGAAGAGTACTTGAGCTTGGTTCCAGGGGGAAATGTGGTGTTGGCG
GGGGTGGGAGTGATTGCGGCGTTTGTGATTGTTCAGAAGGCCATGCAGCT
GTTGGGGTAAGGGTAGGGGAAGGGGGAAAGGACGGAGGGAGGGAATGGCG
TTTGTATATAGCGATTTAAATTGAACAAAAGAAGGGGGGGAGGGCGGGAA
GCAGGCAGAGAAGGAGGGAGGGCGAGTGGCCGAGAGGGAAGGGGGTGTAT
TTTGTCCAAATTGGGGAGTGCGTGTGTAAACTCGAAGTGGAGATGGTAGG
ATGAGCGAAGGAGACGAAGAAGAGAAAAAGAAGAAGAGGGGGAATGGAGA
AGAGGGGTTAGGAGGCGAAGAGGGAGGCGTGGAAGAAGGAGGGGGGAGGA
GAAGGAGAAGAATGATAAAGAGAAACAGAAGGAGGAGGAAGAAGTAACGA
GACGCGACAATCAGTGTCTTTTGTTGGTA back to topCoding sequence (CDS) from alignment at chr2:1431924..1434702+ >NO02G05350.2 ID=NO02G05350.2|Name=NO02G05350.2|organism=Nannochloropsis oceanica|type=CDS|length=1398bp|location=Sequence derived from alignment at chr2:1431924..1434702+ (Nannochloropsis oceanica)
ATGCAATCCAGAGGACCTGCTGGCGGTTCCAGGAGCCGCAAAGCAAGCAA
GAAAGCAGCCATGGCGTGCTCCACTTCCTCAGCTCGATCCCAATATATGC
GACCCTCTTGCTTGACCACCATGACTACGGCGACCGCAATGCTATTGGCG
CCCTTACTGTTCCTAGCTCCACGCACCCTATGCGCCACGGCCTTCCTCTC
GGCCTTTCCCTCGTCGTCAGCATCTTTGTTGACAACCTCCTCCCCATTTT
CCACTGGCTCCTCCCTGACCCAAGCCCGAGGCAAGGCCATGAACAATTTA
CTCACAAAAAGAGGGGGCGCTATGTTTTTTCAAAAGCGGGCAGGAGGAGG
GTCGGTGGATGTGCAGCCACTAACTGATGTTGAGGGAGTTACTTCATCGC
CCAAGCAGCTGCAGCAGCAGCAGCAGCCTCCAGCCCCACCAACGTTCATG
GAGGAGGTCACCGACGTGCTTAGCAGCTTCCAGTACACCCCCACCACCAC
CACCAGCACAACTACTGAAATAGTACCATCATCCCAAGATGACATTGATG
GTGATGGTGACGAGATTCTGGCCGTAACTTCAGTCCCCAAGGAAGACTCC
GAGCCCCTCACTCTAACCAGCGCCATCGCCCTGGTTGCCGGGACTACTGT
GGGAGCGGGCATTTTGGCCTTGCCCGCATTTACCGTAAAATCAGGCTTTC
TCCCCTCCTCCCTCAGCTTGACTGGTGCTTGGCTTTACATGGTCACGACG
GGGTTGCTCATTGCGGAGGTGAACTTGAATTTGGCGGGGAAGAGTCATCG
GCCGGATGGAGGGCTTGTGAGCATGGCCAGGCGGACGATTGGGTCCACGG
GGGCAGCGGCGACGGGCGCGGCTTATTTGTTTTTGCATTATGCCCTGTTG
GTGGCATATATCGCACAGGGCGGGGAGATACTGACCTCGGGGTTGGAGGG
GTTGTTGGGCCTGCTAGGCGTAGGAGCGGGGGAGGGGGTCACCGTGCCGA
GTCAGCTGGCGCCCGTGTTGTTCACCGCCACACTAGGGGGGGCATTGGCG
TTTGGGAACAAGAAGTGGCTGGACTCGGCGAATGATGTCTTGGTTGGAGT
GGTGGTGCTGACGTTCGTGGGGTTGGTAGGGCTGGCAGCACCGAGGGCGA
ACCCGGCGGCGCTGTTGCAGGCGGATTGGGGGGCAACGCTGAGCTCCATC
CCGGTCATGTTTGTGGCACTGGTGTTCCATAATATTGTGCCGGTCATCAG
CTATCGCCTCAAGGGCGATGTGGACAAGATCCGTACCTCTGTCGTCGTCG
GGTCGGGCATCCCCCTACTCATGTTCCTGGTGTGCAACCCTTCCTCCCAC
CCTCCCTCCTCCACAAGCTCCCTTCTTCCTTTATCTCTTTCGTTTTAA back to top
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