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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:1409091..1411194 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G05280.1 vs.
Match: EWM30131.1 (peptide-n -(n-acetyl-beta-glucosaminyl)asparagine amidase [Nannochloropsis gaditana]) HSP 1 Score: 572.8 bits (1475), Expect = 1.400e-159 Identity = 382/681 (56.09%), Postives = 458/681 (67.25%), Query Frame = 0
Query: 1 MPSSRRLLPVGSFLPLLLLL----LHVPPTSCSAFCSSSSSSSSSSSRIRDRKRSASNSFAICRHQMCFGPPSSSSSSGGAGGVGAVRSSSSSRTAAPLYSSSSSSSSSSAAAAAAA----AATAAAAAAAASSSSSSSQATAAPP------RQRVHITRFDADPQGTTTMDEAQQRQQQLAGIAVEGEADDSSMTKPATCLWYELEGTAAAASFFPRPPSPSSELTKKMGAIATPSSSPTRFYYLGGNAEHFLTYLQQELGQTGAAEGEVGRREVEDITQEKEAFASLWREGRLLVADPNTLDMINNKTSFGELLMTYTHRMKRTDDDPLTRDDLLSFLRAEYGEALTADVTFSPSRPPAESMAALKHLLQWFKEGFPYYRSTCLHCGHSGGHAPPSPPPAASTPSAPPVPLPAPL-PNDMVGVVAPSPPERAFNATLTEVYRCGACGKIYRFPRSVALRHVLETRRGRCGEYSRLFFKTTEALGYVSRWVVDWEDHVWVEVELPGKGWVHLDPCEAAVDEPLLYEGWGKKQTYILAFSREEVQDVTRGYTTDWEGALGRRTVSGEEMAGLLEGANVVLKGRRGGEVGKDEGGGQTGMTRKKQGGGTEARRSGAGAVVGDAKRSSRSSSSSSSSG---GGR-KGAPGSANGKQSPA-AAATAGSTATAAAAAATLEAPPP 662
+P+ RR + P LLLL L P S + F +S+ S SS S+ + +C FG PSSSS SG G +VRS+S+S +P SS+S SSSS++++A++ + TA ++SSS+SS ++APP R RVHITR D P T E Q + E + DD + KP TC+ Y++EG AA ASF P SPS+ + A A P+S RF+YLGGNA FL YLQQELGQ A ++ RR V D+ EKE A+LWREGRLLV DP+TLD INNKTSFGELLMTYTHRM+R D+DPLT DL +FLRAEYGE T + T++P R PAE+MAALK LL+WFKEGFPYY+STCLHCGH G P PPPA S+P+A P +P PN M+GVVAPSPPERA NATLTE+Y CGACGKIYRFPRSV+LRHVL+TRRGRCGEYSRLFFKTTEALGYVSRWVVDWEDHVWVEV LPGKGWVHLDPCEAAV+EPLLY+GWGKKQTYILAFSREEV+DVTR YTTDW GALGRR VS EEM+ LL AN VL+G GGE G+ GG+ G R GG E R +G A G ++ RSS +S S+G GG+ KG GS G++ A TA A+ A++ +P P
Sbjct: 34 LPALRRAPVARIYGPELLLLVCILLFAPHPSVATFFGGTSACRSPSSH--------SSIWPLC-----FGAPSSSSGSGS--GPASVRSNSASARRSPSLCSSASPSSSSSSSSASSIPPKSRTAKPTFLSSSSSTSSHPPSSAPPSPPIPSRPRVHITRDDILPPSAGTAAEGALSGQ----VEEENKEDDEAAPKPITCMSYDVEGVAALASFVPAS-SPSTSSPPRPAA-APPTS---RFHYLGGNAGQFLKYLQQELGQAKAEASQISRRAVMDLEAEKEGLAALWREGRLLVEDPHTLDRINNKTSFGELLMTYTHRMQRADEDPLTSQDLRAFLRAEYGEVPTEEATYAPDRRPAEAMAALKRLLEWFKEGFPYYKSTCLHCGHVGPSHSPHPPPAPSSPTAAEAPPISPSQPNHMIGVVAPSPPERALNATLTEIYVCGACGKIYRFPRSVSLRHVLQTRRGRCGEYSRLFFKTTEALGYVSRWVVDWEDHVWVEVRLPGKGWVHLDPCEAAVNEPLLYQGWGKKQTYILAFSREEVEDVTREYTTDWAGALGRRRVSEEEMSDLLACANGVLQG--GGERGE---GGKEGEGR----GGDEKRNAGKNA--GQTEKRRRSSGTSPSAGTDTGGKGKGGLGSGGGREGGRDGKDPAAVTAPVASKASSTSSPKP 679
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G05280.1 ID=NO02G05280.1|Name=NO02G05280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2104bp
ATGCCTTCGTCTCGACGACTTTTGCCCGTCGGCTCTTTCCTTCCACTACT
CCTCCTCCTTCTCCATGTCCCTCCCACCTCTTGCTCTGCCTTCTGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAATACGTGACAGAAAAAGA
TCAGCATCAAACTCCTTCGCAATATGCCGACATCAGATGTGCTTCGGCCC
CCCCTCGTCCTCTTCAAGCTCGGGTGGCGCGGGCGGGGTCGGGGCTGTCC
GTAGCAGTAGCAGCAGTCGCACAGCAGCACCCTTGTACTCCTCCTCATCC
TCGTCTTCCTCCTCGTCTGCTGCTGCCGCTGCTGCTGCTGCTGCTACTGC
TGCTGCTGCTGCTGCTGCTGCTTCCTCCTCATCTTCCTCCTCGCAGGCAA
CAGCAGCACCACCACGGCAACGCGTGCACATCACACGGTTTGACGCCGAC
CCCCAAGGCACCACGACCATGGACGAGGCCCAACAACGGCAGCAGCAGCT
GGCGGGAATTGCGGTAGAAGGTGAAGCGGATGATAGCAGCATGACCAAGC
CGGCAACATGCTTGTGGTACGAGCTGGAAGGCACCGCTGCTGCTGCTTCC
TTCTTCCCTCGTCCTCCTTCCCCCTCATCAGAGCTCACAAAGAAAATGGG
TGCCATTGCCACTCCTTCGTCCTCGCCTACGCGTTTCTACTACCTAGGCG
GGAATGCAGAGCATTTCCTCACGTATCTCCAGCAGGAGCTGGGCCAGACA
GGGGCGGCGGAAGGAGAAGTGGGCCGTAGGGAAGTGGAAGACATCACTCA
GGAAAAAGAGGCGTTCGCCTCCCTGTGGCGCGAAGGCCGCTTGCTCGTCG
CGGATCCCAACACCCTCGATATGATCAACAACAAAACGTCCTTCGGGGAG
CTGCTAATGACGTACACCCATCGCATGAAGCGGACTGACGACGACCCTCT
CACCAGGGATGACCTCCTCTCCTTCCTCCGGGCCGAATACGGCGAAGCCT
TGACAGCTGACGTCACATTCTCCCCCTCCCGTCCCCCCGCCGAGAGCATG
GCGGCACTCAAGCATCTCCTCCAATGGTTCAAGGAAGGCTTCCCCTATTA
CAGATCCACCTGTCTCCACTGCGGCCACTCGGGGGGACATGCTCCTCCTT
CCCCCCCTCCAGCAGCTTCCACTCCCTCCGCCCCCCCCGTCCCTCTCCCT
GCCCCTCTGCCCAATGATATGGTGGGTGTCGTTGCTCCTTCCCCTCCTGA
ACGCGCCTTCAACGCCACGCTTACAGAGGTATACCGCTGCGGGGCATGTG
GAAAGATTTATCGTTTCCCTCGCTCAGTGGCCCTGAGACACGTGCTCGAA
ACGAGGAGAGGGCGGTGTGGGGAATACTCCAGGTTGTTCTTCAAGACAAC
CGAGGCCCTGGGATACGTGAGTCGGTGGGTGGTCGATTGGGAAGACCACG
TGTGGGTGGAGGTTGAGCTGCCGGGCAAAGGGTGGGTCCACTTGGACCCT
TGCGAGGCGGCGGTGGACGAACCGCTCTTGTATGAGGGATGGGGGAAGAA
GCAGACGTACATCTTGGCGTTCTCGCGGGAGGAGGTGCAGGATGTTACGC
GAGGATACACGACGGATTGGGAGGGGGCGTTGGGGAGGAGGACTGTGAGT
GGGGAGGAGATGGCCGGGCTGTTGGAGGGGGCGAATGTAGTGCTGAAGGG
AAGGCGAGGAGGGGAGGTAGGGAAGGACGAAGGGGGGGGGCAGACGGGGA
TGACGAGGAAGAAACAAGGAGGGGGGACAGAGGCGAGGAGGAGTGGGGCT
GGAGCTGTAGTGGGAGATGCGAAGCGTAGCAGCCGCAGTAGCAGTAGCAG
TAGCAGTAGTGGTGGTGGAAGGAAGGGTGCTCCCGGTTCTGCCAATGGCA
AACAAAGTCCAGCAGCTGCAGCCACTGCAGGGTCAACAGCAACAGCAGCA
GCAGCAGCAGCAACACTAGAAGCGCCACCACCAGCAAAATGAGGAGCTGT
GGAAGATTAGCTGTGTTGGAGCAGAAAACGAGGGGTGTGTGAATACCTAA
AAAAGCCCCCAAAGTTGAACCCAGTCAATGAAAAGCTCATCCGTTATATT
TACG back to topprotein sequence of NO02G05280.1 >NO02G05280.1-protein ID=NO02G05280.1-protein|Name=NO02G05280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=664bp
MPSSRRLLPVGSFLPLLLLLLHVPPTSCSAFCSSSSSSSSSSSRIRDRKR
SASNSFAICRHQMCFGPPSSSSSSGGAGGVGAVRSSSSSRTAAPLYSSSS
SSSSSSAAAAAAAAATAAAAAAAASSSSSSSQATAAPPRQRVHITRFDAD
PQGTTTMDEAQQRQQQLAGIAVEGEADDSSMTKPATCLWYELEGTAAAAS
FFPRPPSPSSELTKKMGAIATPSSSPTRFYYLGGNAEHFLTYLQQELGQT
GAAEGEVGRREVEDITQEKEAFASLWREGRLLVADPNTLDMINNKTSFGE
LLMTYTHRMKRTDDDPLTRDDLLSFLRAEYGEALTADVTFSPSRPPAESM
AALKHLLQWFKEGFPYYRSTCLHCGHSGGHAPPSPPPAASTPSAPPVPLP
APLPNDMVGVVAPSPPERAFNATLTEVYRCGACGKIYRFPRSVALRHVLE
TRRGRCGEYSRLFFKTTEALGYVSRWVVDWEDHVWVEVELPGKGWVHLDP
CEAAVDEPLLYEGWGKKQTYILAFSREEVQDVTRGYTTDWEGALGRRTVS
GEEMAGLLEGANVVLKGRRGGEVGKDEGGGQTGMTRKKQGGGTEARRSGA
GAVVGDAKRSSRSSSSSSSSGGGRKGAPGSANGKQSPAAAATAGSTATAA
AAAATLEAPPPAK* back to topmRNA from alignment at chr2:1409091..1411194- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G05280.1 ID=NO02G05280.1|Name=NO02G05280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2104bp|location=Sequence derived from alignment at chr2:1409091..1411194- (Nannochloropsis oceanica)
ATGCCTTCGTCTCGACGACTTTTGCCCGTCGGCTCTTTCCTTCCACTACT
CCTCCTCCTTCTCCATGTCCCTCCCACCTCTTGCTCTGCCTTCTGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAATACGTGACAGAAAAAGA
TCAGCATCAAACTCCTTCGCAATATGCCGACATCAGATGTGCTTCGGCCC
CCCCTCGTCCTCTTCAAGCTCGGGTGGCGCGGGCGGGGTCGGGGCTGTCC
GTAGCAGTAGCAGCAGTCGCACAGCAGCACCCTTGTACTCCTCCTCATCC
TCGTCTTCCTCCTCGTCTGCTGCTGCCGCTGCTGCTGCTGCTGCTACTGC
TGCTGCTGCTGCTGCTGCTGCTTCCTCCTCATCTTCCTCCTCGCAGGCAA
CAGCAGCACCACCACGGCAACGCGTGCACATCACACGGTTTGACGCCGAC
CCCCAAGGCACCACGACCATGGACGAGGCCCAACAACGGCAGCAGCAGCT
GGCGGGAATTGCGGTAGAAGGTGAAGCGGATGATAGCAGCATGACCAAGC
CGGCAACATGCTTGTGGTACGAGCTGGAAGGCACCGCTGCTGCTGCTTCC
TTCTTCCCTCGTCCTCCTTCCCCCTCATCAGAGCTCACAAAGAAAATGGG
TGCCATTGCCACTCCTTCGTCCTCGCCTACGCGTTTCTACTACCTAGGCG
GGAATGCAGAGCATTTCCTCACGTATCTCCAGCAGGAGCTGGGCCAGACA
GGGGCGGCGGAAGGAGAAGTGGGCCGTAGGGAAGTGGAAGACATCACTCA
GGAAAAAGAGGCGTTCGCCTCCCTGTGGCGCGAAGGCCGCTTGCTCGTCG
CGGATCCCAACACCCTCGATATGATCAACAACAAAACGTCCTTCGGGGAG
CTGCTAATGACGTACACCCATCGCATGAAGCGGACTGACGACGACCCTCT
CACCAGGGATGACCTCCTCTCCTTCCTCCGGGCCGAATACGGCGAAGCCT
TGACAGCTGACGTCACATTCTCCCCCTCCCGTCCCCCCGCCGAGAGCATG
GCGGCACTCAAGCATCTCCTCCAATGGTTCAAGGAAGGCTTCCCCTATTA
CAGATCCACCTGTCTCCACTGCGGCCACTCGGGGGGACATGCTCCTCCTT
CCCCCCCTCCAGCAGCTTCCACTCCCTCCGCCCCCCCCGTCCCTCTCCCT
GCCCCTCTGCCCAATGATATGGTGGGTGTCGTTGCTCCTTCCCCTCCTGA
ACGCGCCTTCAACGCCACGCTTACAGAGGTATACCGCTGCGGGGCATGTG
GAAAGATTTATCGTTTCCCTCGCTCAGTGGCCCTGAGACACGTGCTCGAA
ACGAGGAGAGGGCGGTGTGGGGAATACTCCAGGTTGTTCTTCAAGACAAC
CGAGGCCCTGGGATACGTGAGTCGGTGGGTGGTCGATTGGGAAGACCACG
TGTGGGTGGAGGTTGAGCTGCCGGGCAAAGGGTGGGTCCACTTGGACCCT
TGCGAGGCGGCGGTGGACGAACCGCTCTTGTATGAGGGATGGGGGAAGAA
GCAGACGTACATCTTGGCGTTCTCGCGGGAGGAGGTGCAGGATGTTACGC
GAGGATACACGACGGATTGGGAGGGGGCGTTGGGGAGGAGGACTGTGAGT
GGGGAGGAGATGGCCGGGCTGTTGGAGGGGGCGAATGTAGTGCTGAAGGG
AAGGCGAGGAGGGGAGGTAGGGAAGGACGAAGGGGGGGGGCAGACGGGGA
TGACGAGGAAGAAACAAGGAGGGGGGACAGAGGCGAGGAGGAGTGGGGCT
GGAGCTGTAGTGGGAGATGCGAAGCGTAGCAGCCGCAGTAGCAGTAGCAG
TAGCAGTAGTGGTGGTGGAAGGAAGGGTGCTCCCGGTTCTGCCAATGGCA
AACAAAGTCCAGCAGCTGCAGCCACTGCAGGGTCAACAGCAACAGCAGCA
GCAGCAGCAGCAACACTAGAAGCGCCACCACCAGCAAAATGAGGAGCTGT
GGAAGATTAGCTGTGTTGGAGCAGAAAACGAGGGGTGTGTGAATACCTAA
AAAAGCCCCCAAAGTTGAACCCAGTCAATGAAAAGCTCATCCGTTATATT
TACG back to topCoding sequence (CDS) from alignment at chr2:1409091..1411194- >NO02G05280.1 ID=NO02G05280.1|Name=NO02G05280.1|organism=Nannochloropsis oceanica|type=CDS|length=1992bp|location=Sequence derived from alignment at chr2:1409091..1411194- (Nannochloropsis oceanica)
ATGCCTTCGTCTCGACGACTTTTGCCCGTCGGCTCTTTCCTTCCACTACT
CCTCCTCCTTCTCCATGTCCCTCCCACCTCTTGCTCTGCCTTCTGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAATACGTGACAGAAAAAGA
TCAGCATCAAACTCCTTCGCAATATGCCGACATCAGATGTGCTTCGGCCC
CCCCTCGTCCTCTTCAAGCTCGGGTGGCGCGGGCGGGGTCGGGGCTGTCC
GTAGCAGTAGCAGCAGTCGCACAGCAGCACCCTTGTACTCCTCCTCATCC
TCGTCTTCCTCCTCGTCTGCTGCTGCCGCTGCTGCTGCTGCTGCTACTGC
TGCTGCTGCTGCTGCTGCTGCTTCCTCCTCATCTTCCTCCTCGCAGGCAA
CAGCAGCACCACCACGGCAACGCGTGCACATCACACGGTTTGACGCCGAC
CCCCAAGGCACCACGACCATGGACGAGGCCCAACAACGGCAGCAGCAGCT
GGCGGGAATTGCGGTAGAAGGTGAAGCGGATGATAGCAGCATGACCAAGC
CGGCAACATGCTTGTGGTACGAGCTGGAAGGCACCGCTGCTGCTGCTTCC
TTCTTCCCTCGTCCTCCTTCCCCCTCATCAGAGCTCACAAAGAAAATGGG
TGCCATTGCCACTCCTTCGTCCTCGCCTACGCGTTTCTACTACCTAGGCG
GGAATGCAGAGCATTTCCTCACGTATCTCCAGCAGGAGCTGGGCCAGACA
GGGGCGGCGGAAGGAGAAGTGGGCCGTAGGGAAGTGGAAGACATCACTCA
GGAAAAAGAGGCGTTCGCCTCCCTGTGGCGCGAAGGCCGCTTGCTCGTCG
CGGATCCCAACACCCTCGATATGATCAACAACAAAACGTCCTTCGGGGAG
CTGCTAATGACGTACACCCATCGCATGAAGCGGACTGACGACGACCCTCT
CACCAGGGATGACCTCCTCTCCTTCCTCCGGGCCGAATACGGCGAAGCCT
TGACAGCTGACGTCACATTCTCCCCCTCCCGTCCCCCCGCCGAGAGCATG
GCGGCACTCAAGCATCTCCTCCAATGGTTCAAGGAAGGCTTCCCCTATTA
CAGATCCACCTGTCTCCACTGCGGCCACTCGGGGGGACATGCTCCTCCTT
CCCCCCCTCCAGCAGCTTCCACTCCCTCCGCCCCCCCCGTCCCTCTCCCT
GCCCCTCTGCCCAATGATATGGTGGGTGTCGTTGCTCCTTCCCCTCCTGA
ACGCGCCTTCAACGCCACGCTTACAGAGGTATACCGCTGCGGGGCATGTG
GAAAGATTTATCGTTTCCCTCGCTCAGTGGCCCTGAGACACGTGCTCGAA
ACGAGGAGAGGGCGGTGTGGGGAATACTCCAGGTTGTTCTTCAAGACAAC
CGAGGCCCTGGGATACGTGAGTCGGTGGGTGGTCGATTGGGAAGACCACG
TGTGGGTGGAGGTTGAGCTGCCGGGCAAAGGGTGGGTCCACTTGGACCCT
TGCGAGGCGGCGGTGGACGAACCGCTCTTGTATGAGGGATGGGGGAAGAA
GCAGACGTACATCTTGGCGTTCTCGCGGGAGGAGGTGCAGGATGTTACGC
GAGGATACACGACGGATTGGGAGGGGGCGTTGGGGAGGAGGACTGTGAGT
GGGGAGGAGATGGCCGGGCTGTTGGAGGGGGCGAATGTAGTGCTGAAGGG
AAGGCGAGGAGGGGAGGTAGGGAAGGACGAAGGGGGGGGGCAGACGGGGA
TGACGAGGAAGAAACAAGGAGGGGGGACAGAGGCGAGGAGGAGTGGGGCT
GGAGCTGTAGTGGGAGATGCGAAGCGTAGCAGCCGCAGTAGCAGTAGCAG
TAGCAGTAGTGGTGGTGGAAGGAAGGGTGCTCCCGGTTCTGCCAATGGCA
AACAAAGTCCAGCAGCTGCAGCCACTGCAGGGTCAACAGCAACAGCAGCA
GCAGCAGCAGCAACACTAGAAGCGCCACCACCAGCAAAATGA back to top
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