NO02G05210.1, NO02G05210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05210.1
Unique NameNO02G05210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length873
Alignment locationchr2:1394816..1395856 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1394816..1395856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO02G05210.1 vs.
Match: OQS07619.1 (hypothetical protein THRCLA_20106 [Thraustotheca clavata])

HSP 1 Score: 68.9 bits (167), Expect = 2.900e-8
Identity = 34/108 (31.48%), Postives = 64/108 (59.26%), Query Frame = 0 
Query:  154 KAAEKTLAILLQAMVGQQILVELKTNAEARGILEEADENMNLTLILAEHISSSGAVTQHPLPFLFLPGSAVRYVHLPPRLSIDKTIQRHVDALDFNSKRFQRGRLKPA 262
            K   +TL I+LQ+M+G +++++LKT  + +G +EE  + M++ L     I+ +G +    L  LF+ G  + YVH+P R+ ++  ++ +V  ++ N K + R   KPA
Sbjct:    4 KKDHRTLLIVLQSMLGMEVMIDLKTEYQLKGTIEEVGDGMDVRLSNVSQIAPNGKMLL--LDELFVMGKMILYVHIPDRIHLNTHLKEYVQMVERNKKMYNRAVRKPA 109
The following BLAST results are available for this feature:
BLAST of NO02G05210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OQS07619.12.900e-831.48hypothetical protein THRCLA_20106 [Thraustotheca c... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05210NO02G05210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05210.1NO02G05210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05210.1.cds1NO02G05210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05210.1.cds2NO02G05210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05210.1 ID=NO02G05210.1|Name=NO02G05210.1|organism=Nannochloropsis oceanica|type=mRNA|length=873bp
ATGATAGCAGTGCAGCACCAGCAGCAGCATGAAAAAGACGAGGGAGGGAG
GGAGAGGTCAGGACAATTGGAGGAGGAGAAGCAAATAACGCACCAGAAGC
GGAAACGTACCGATGAGGAGGAGGATAAGGAGGACAATAAAGCTGAAGGT
GGCGTTGGAGGAGAAGATGATCAACAGGAAGTGGAAGGGGAATCAGAAGA
AAAAAAAGTAGAAGAAGAAGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGACTACAACTCTTTTTTCGATGAAGACAACGAT
AGCGGGCCAGTCCCGTCCCTCTCCTCCTTCTCCTCCTCCACCTCCCACCC
ATCACCAAATCACCACCATCAAGACCCTTCCAGCCACTATCAACTCTCCT
CCTCCTCTTCTCCTCCTTCCTCCCCCCTCCGCCTTCCTCCTCCACCTCGT
CCACCACGTAAAGCCGCGGAAAAAACGCTCGCCATCCTCCTTCAAGCCAT
GGTAGGGCAGCAGATCCTTGTTGAACTCAAAACGAATGCTGAAGCCCGGG
GGATTTTAGAGGAAGCCGACGAAAACATGAATCTCACTCTCATCCTCGCC
GAGCATATCTCCTCCTCCGGTGCCGTCACCCAACACCCTCTCCCTTTCCT
CTTTCTGCCGGGTTCGGCGGTCCGCTACGTCCACCTTCCCCCTCGCCTTT
CAATAGACAAGACCATTCAAAGACACGTGGACGCCCTCGACTTCAACTCT
AAACGGTTTCAACGCGGGAGGCTAAAGCCCGCGCCCGTGGGGCAGGCGCC
TCCGGGAGCAAAGACGACGATCGAGGTGCGGTTGTCTATGCCAGCGGCGA
AAGAGACGCGTCCTGAATATTGA
back to top

protein sequence of NO02G05210.1

>NO02G05210.1-protein ID=NO02G05210.1-protein|Name=NO02G05210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MIAVQHQQQHEKDEGGRERSGQLEEEKQITHQKRKRTDEEEDKEDNKAEG
GVGGEDDQQEVEGESEEKKVEEEEEGEEEEEEEEEEEEEDYNSFFDEDND
SGPVPSLSSFSSSTSHPSPNHHHQDPSSHYQLSSSSSPPSSPLRLPPPPR
PPRKAAEKTLAILLQAMVGQQILVELKTNAEARGILEEADENMNLTLILA
EHISSSGAVTQHPLPFLFLPGSAVRYVHLPPRLSIDKTIQRHVDALDFNS
KRFQRGRLKPAPVGQAPPGAKTTIEVRLSMPAAKETRPEY*
back to top

mRNA from alignment at chr2:1394816..1395856-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05210.1 ID=NO02G05210.1|Name=NO02G05210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1041bp|location=Sequence derived from alignment at chr2:1394816..1395856- (Nannochloropsis oceanica)
ATGATAGCAGTGCAGCACCAGCAGCAGCATGAAAAAGACGAGGGAGGGAG
GGAGAGGTCAGGACAATTGGAGGAGGAGAAGCAAATAACGCACCAGAAGC
GGAAACGTACCGATGAGGAGGAGGATAAGGAGGACAATAAAGCTGAAGGT
GGCGTTGGAGGAGAAGATGATCAACAGGAAGTGGAAGGGGAATCAGAAGA
AAAAAAAGTAGAAGAAGAAGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGACTACAACTCTTTTTTCGATGAAGACAACGAT
AGCGGGCCAGTCCCGTCCCTCTCCTCCTTCTCCTCCTCCACCTCCCACCC
ATCACCAAATCACCACCATCAAGACCCTTCCAGCCACTATCAACTCTCCT
CCTCCTCTTCTCCTCCTTCCTCCCCCCTCCGCCTTCCTCCTCCACCTCGT
CCACCACGTAAAGCCGCGGAAAAAACGCTCGCCATCCTCCTTCAAGCCAT
GGTAGGGCAGCAGATCCTTGTTGAACTCAAAACGAATGCTGAAGCCCGGG
GGATTTTAGAGGAAGGTACGCATAGCAAGAGGGACGACAGGAAATTGGAA
GAAGGGCTGGAAGTCCTCGATGATGGAAGGAAAGGTACATGAAGAGCTCT
TTTGTCTCAGAAATGGCCGGGCCCTCTCCTTTCTTGCACCCCATTTTTCC
CTCCCTCCCCTCCTTCCCCGCCACTATACACAGCCGACGAAAACATGAAT
CTCACTCTCATCCTCGCCGAGCATATCTCCTCCTCCGGTGCCGTCACCCA
ACACCCTCTCCCTTTCCTCTTTCTGCCGGGTTCGGCGGTCCGCTACGTCC
ACCTTCCCCCTCGCCTTTCAATAGACAAGACCATTCAAAGACACGTGGAC
GCCCTCGACTTCAACTCTAAACGGTTTCAACGCGGGAGGCTAAAGCCCGC
GCCCGTGGGGCAGGCGCCTCCGGGAGCAAAGACGACGATCGAGGTGCGGT
TGTCTATGCCAGCGGCGAAAGAGACGCGTCCTGAATATTGA
back to top

Coding sequence (CDS) from alignment at chr2:1394816..1395856-

>NO02G05210.1 ID=NO02G05210.1|Name=NO02G05210.1|organism=Nannochloropsis oceanica|type=CDS|length=873bp|location=Sequence derived from alignment at chr2:1394816..1395856- (Nannochloropsis oceanica)
ATGATAGCAGTGCAGCACCAGCAGCAGCATGAAAAAGACGAGGGAGGGAG
GGAGAGGTCAGGACAATTGGAGGAGGAGAAGCAAATAACGCACCAGAAGC
GGAAACGTACCGATGAGGAGGAGGATAAGGAGGACAATAAAGCTGAAGGT
GGCGTTGGAGGAGAAGATGATCAACAGGAAGTGGAAGGGGAATCAGAAGA
AAAAAAAGTAGAAGAAGAAGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGACTACAACTCTTTTTTCGATGAAGACAACGAT
AGCGGGCCAGTCCCGTCCCTCTCCTCCTTCTCCTCCTCCACCTCCCACCC
ATCACCAAATCACCACCATCAAGACCCTTCCAGCCACTATCAACTCTCCT
CCTCCTCTTCTCCTCCTTCCTCCCCCCTCCGCCTTCCTCCTCCACCTCGT
CCACCACGTAAAGCCGCGGAAAAAACGCTCGCCATCCTCCTTCAAGCCAT
GGTAGGGCAGCAGATCCTTGTTGAACTCAAAACGAATGCTGAAGCCCGGG
GGATTTTAGAGGAAGCCGACGAAAACATGAATCTCACTCTCATCCTCGCC
GAGCATATCTCCTCCTCCGGTGCCGTCACCCAACACCCTCTCCCTTTCCT
CTTTCTGCCGGGTTCGGCGGTCCGCTACGTCCACCTTCCCCCTCGCCTTT
CAATAGACAAGACCATTCAAAGACACGTGGACGCCCTCGACTTCAACTCT
AAACGGTTTCAACGCGGGAGGCTAAAGCCCGCGCCCGTGGGGCAGGCGCC
TCCGGGAGCAAAGACGACGATCGAGGTGCGGTTGTCTATGCCAGCGGCGA
AAGAGACGCGTCCTGAATATTGA
back to top
Synonyms
Publications