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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:1392458..1394473 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G05200.1 vs.
Match: EWM30122.1 (hypothetical protein Naga_100994g2 [Nannochloropsis gaditana]) HSP 1 Score: 395.6 bits (1015), Expect = 3.100e-106 Identity = 272/561 (48.48%), Postives = 342/561 (60.96%), Query Frame = 0
Query: 45 LLAAASSTLPSVLLPAFRLSRSDAALEEFHIWLQTKGGLDLSASPLALRRIPFQ-ENDPSRGTNATQITNLGLFTTSAIEKDQILLAIPESLVLTSELPSAALETLAEIAKLDHIGRLALRIVYEASRAHDSSS--SLSSSSLSSSSKF-----ENGGWLPYLRVLPSRDDLNLPFLWDE--REEENENEGREE--GEECQQNEGLLGLLAPSPLYDDIIEVRAEMRQELKSLRGACTQAIATTSTTTITTSRDDQHNDDEALSLHHVLLPLLTWQVWTWARAIAMSRPYVFQSDANAAFKTSICSSSSNENCSRTNATIYPLLRLIPLIDMANHDDRVHYAVQPGDGVFTSRKDIQLVADRAYPHANTQFLSTYGALSSASKFYSFGYLDTLP-PPLSSFSPSSSSSYIISAKGVSCQMQPGL-PAQGTALLVLSLD-----SNGNNKQEGGAA--------------EKTERLLSYTRKAAVLASVGMKAQGQRVEISTRTSFNSS-GPTLAQVTIEEVLEAEMEQKGELREGGGLERLRRYLRLKYLSEGDLD-FLSS 571
L A+A+ + P+ +F+LSR DAAL+ F WL KGG+DLSAS L LRR+ EN P +L LFTT IEKDQILLAIP S+VLTSELPS AL LA A LD +GRLALR+++E S+A SS L S +SSS F +N GWLPY+RVLPSR+ ++LPFLW+E RE E+EG E+ G E + LL LLAPSPLYDDI+ +R EMR EL+SLR A + T+ TS +L LTW+ W+WARA+AMSRPYV +S S S E R + P+L+L+PL+DMANHDD +HYAVQPGDGVFTSR+++QLVADR YP FLS+YG LSSA+KFYSFG+LDTL PP + SP SS + +++ PGL PAQGTALLVLSLD GN+K E + E+ + RK VL+S+G+KA+GQRVEISTRT G T+ E + G +GGG++RLRRYLRLK++ E D+D FL+S
Sbjct: 54 LCASATPSAPA----SFQLSRDDAALDAFRHWLNVKGGIDLSASSLGLRRLAHDDENSPGNA-------DLELFTTRPIEKDQILLAIPPSIVLTSELPSPALRDLAGDAALDDMGRLALRLLHEVSQAGAGSSFQPLLFSHATSSSSFPTLPLDNSGWLPYVRVLPSRNQMDLPFLWEEDGREGGGEDEGEEDSCGPE-DSRDSLLALLAPSPLYDDIVALREEMRGELESLRKA------VLAHRTLPTSP--------------TILSCLTWENWSWARAVAMSRPYVLKSRP----------SRSTEEAGRPDFFGDPVLQLLPLLDMANHDDAIHYAVQPGDGVFTSREEVQLVADRDYPEVGAPFLSSYGPLSSATKFYSFGFLDTLSLPPSARSSPPSS---LFASRESREDDMPGLVPAQGTALLVLSLDGEGCTDEGNHKSEKRRSSPEMPEAAKEEMTREERRARNVFGRKLDVLSSMGLKAEGQRVEISTRTLLKRGLGSERMAATVRMEGGEEEGEGGREDDGGGMDRLRRYLRLKHMGEEDIDGFLNS 569
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G05200.1 ID=NO02G05200.1|Name=NO02G05200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2016bp ATGCAGTTTTGGAGGAGAAGACGAGCTTTCCTCGTCTGGATCGGCAATCT CTTCCTCTCTCTCCGGGGCGACGCCTTCGTGCCACTAGCACCTCGCTGCC CGAATGTAAAACAGCTTCAGGCTCTCGGTCGTCTTCTCGCAGCAGCCTCC TCCACCTTGCCCTCCGTGCTACTACCAGCCTTCCGACTGTCCCGCAGCGA TGCCGCTCTCGAAGAATTCCATATCTGGCTCCAAACCAAAGGAGGCCTGG ACCTATCTGCGTCACCCCTTGCTTTGCGCCGAATTCCCTTCCAGGAGAAC GACCCGAGCAGGGGCACCAACGCAACTCAAATTACAAACCTCGGCCTCTT CACAACCAGCGCAATTGAAAAAGATCAAATTCTCCTTGCCATTCCTGAGT CTTTAGTGCTAACATCGGAACTTCCTTCTGCTGCTCTTGAAACTTTGGCG GAGATCGCAAAGCTTGATCATATCGGTCGCTTGGCTCTTCGCATTGTATA CGAGGCCAGTCGCGCGCATGATTCCTCTTCCTCGCTCTCTTCTTCATCGT TGTCGTCCTCTTCAAAGTTTGAAAATGGAGGATGGCTTCCTTATCTCCGC GTGCTTCCGTCGCGTGATGACCTGAACCTTCCCTTTTTGTGGGACGAGAG GGAGGAGGAGAACGAGAACGAGGGAAGGGAAGAGGGGGAAGAGTGTCAAC AAAACGAAGGGCTCTTAGGCTTACTGGCACCAAGCCCGCTATACGACGAC ATAATTGAAGTCCGCGCTGAGATGCGACAAGAGCTGAAAAGCTTACGCGG TGCATGTACCCAAGCAATAGCCACTACTTCAACTACCACCATCACTACCA GCAGAGACGACCAGCATAACGACGATGAGGCATTGTCCCTTCATCACGTC CTCCTTCCCCTCCTCACCTGGCAGGTTTGGACGTGGGCCCGTGCCATCGC CATGTCCCGTCCGTATGTCTTCCAATCTGACGCCAATGCTGCCTTCAAGA CCAGCATTTGCAGCAGCAGCAGCAACGAGAATTGCAGTAGAACCAACGCA ACGATCTATCCGTTGCTCCGCCTCATTCCCTTGATAGACATGGCCAATCA CGATGACCGCGTTCACTATGCAGTCCAACCAGGGGACGGGGTATTCACCT CTCGAAAAGACATTCAATTAGTAGCGGACCGCGCATACCCCCACGCAAAC ACTCAATTCCTCTCCACCTACGGCGCGCTGTCGTCAGCTTCCAAATTTTA TTCATTCGGATACTTGGACACTCTTCCCCCCCCGTTGTCCTCTTTCTCTC CCTCCTCCTCCTCGTCCTACATTATCTCTGCAAAGGGAGTGAGCTGTCAG ATGCAGCCCGGCCTTCCAGCACAGGGCACCGCCCTGCTGGTCCTCAGCCT CGACAGCAACGGTAACAATAAGCAAGAGGGAGGGGCAGCAGAGAAAACGG AGCGACTTCTGTCTTACACGCGGAAGGCAGCAGTGTTGGCCTCGGTAGGT ATGAAGGCACAGGGGCAGCGAGTGGAGATCTCGACGCGGACGTCTTTCAA CAGCTCCGGGCCGACACTGGCTCAGGTCACGATTGAAGAAGTGTTGGAGG CGGAGATGGAGCAGAAAGGAGAACTTCGAGAAGGAGGAGGGCTGGAACGC TTGCGACGCTATCTGAGACTCAAATATTTATCTGAGGGGGACCTGGATTT TTTATCCTCTTCCTCCTTCGCTACTTCAACGTCCTCCCCCTCCAGCCCTG AAAAGAGGTTGTGGACCCGCCTTTCTCTCCCTGTGAGGAAAGATGTAGAG TTGGCGGTAGCTCTCGAGGTGGTCTCTCTGTGTTCACCGGCTTTGCAAAG CGTGCAAGATAGCTTAGGTCGAGTGTGCCAGAGATTGCTCGAGGGAGGGA GGGAGAGCGAGATAGACAGACATCGGTTGGGTTTGCTGCAGACGCTGTTG CACGGCGAGATGTTGGCGTTGCGGGCGGTGGCCGAGCTGTTCATGTCAGA GGTGGAAGCAAATTGA back to topprotein sequence of NO02G05200.1 >NO02G05200.1-protein ID=NO02G05200.1-protein|Name=NO02G05200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=672bp MQFWRRRRAFLVWIGNLFLSLRGDAFVPLAPRCPNVKQLQALGRLLAAAS STLPSVLLPAFRLSRSDAALEEFHIWLQTKGGLDLSASPLALRRIPFQEN DPSRGTNATQITNLGLFTTSAIEKDQILLAIPESLVLTSELPSAALETLA EIAKLDHIGRLALRIVYEASRAHDSSSSLSSSSLSSSSKFENGGWLPYLR VLPSRDDLNLPFLWDEREEENENEGREEGEECQQNEGLLGLLAPSPLYDD IIEVRAEMRQELKSLRGACTQAIATTSTTTITTSRDDQHNDDEALSLHHV LLPLLTWQVWTWARAIAMSRPYVFQSDANAAFKTSICSSSSNENCSRTNA TIYPLLRLIPLIDMANHDDRVHYAVQPGDGVFTSRKDIQLVADRAYPHAN TQFLSTYGALSSASKFYSFGYLDTLPPPLSSFSPSSSSSYIISAKGVSCQ MQPGLPAQGTALLVLSLDSNGNNKQEGGAAEKTERLLSYTRKAAVLASVG MKAQGQRVEISTRTSFNSSGPTLAQVTIEEVLEAEMEQKGELREGGGLER LRRYLRLKYLSEGDLDFLSSSSFATSTSSPSSPEKRLWTRLSLPVRKDVE LAVALEVVSLCSPALQSVQDSLGRVCQRLLEGGRESEIDRHRLGLLQTLL HGEMLALRAVAELFMSEVEAN* back to topmRNA from alignment at chr2:1392458..1394473+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G05200.1 ID=NO02G05200.1|Name=NO02G05200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2016bp|location=Sequence derived from alignment at chr2:1392458..1394473+ (Nannochloropsis oceanica) ATGCAGTTTTGGAGGAGAAGACGAGCTTTCCTCGTCTGGATCGGCAATCT
CTTCCTCTCTCTCCGGGGCGACGCCTTCGTGCCACTAGCACCTCGCTGCC
CGAATGTAAAACAGCTTCAGGCTCTCGGTCGTCTTCTCGCAGCAGCCTCC
TCCACCTTGCCCTCCGTGCTACTACCAGCCTTCCGACTGTCCCGCAGCGA
TGCCGCTCTCGAAGAATTCCATATCTGGCTCCAAACCAAAGGAGGCCTGG
ACCTATCTGCGTCACCCCTTGCTTTGCGCCGAATTCCCTTCCAGGAGAAC
GACCCGAGCAGGGGCACCAACGCAACTCAAATTACAAACCTCGGCCTCTT
CACAACCAGCGCAATTGAAAAAGATCAAATTCTCCTTGCCATTCCTGAGT
CTTTAGTGCTAACATCGGAACTTCCTTCTGCTGCTCTTGAAACTTTGGCG
GAGATCGCAAAGCTTGATCATATCGGTCGCTTGGCTCTTCGCATTGTATA
CGAGGCCAGTCGCGCGCATGATTCCTCTTCCTCGCTCTCTTCTTCATCGT
TGTCGTCCTCTTCAAAGTTTGAAAATGGAGGATGGCTTCCTTATCTCCGC
GTGCTTCCGTCGCGTGATGACCTGAACCTTCCCTTTTTGTGGGACGAGAG
GGAGGAGGAGAACGAGAACGAGGGAAGGGAAGAGGGGGAAGAGTGTCAAC
AAAACGAAGGGCTCTTAGGCTTACTGGCACCAAGCCCGCTATACGACGAC
ATAATTGAAGTCCGCGCTGAGATGCGACAAGAGCTGAAAAGCTTACGCGG
TGCATGTACCCAAGCAATAGCCACTACTTCAACTACCACCATCACTACCA
GCAGAGACGACCAGCATAACGACGATGAGGCATTGTCCCTTCATCACGTC
CTCCTTCCCCTCCTCACCTGGCAGGTTTGGACGTGGGCCCGTGCCATCGC
CATGTCCCGTCCGTATGTCTTCCAATCTGACGCCAATGCTGCCTTCAAGA
CCAGCATTTGCAGCAGCAGCAGCAACGAGAATTGCAGTAGAACCAACGCA
ACGATCTATCCGTTGCTCCGCCTCATTCCCTTGATAGACATGGCCAATCA
CGATGACCGCGTTCACTATGCAGTCCAACCAGGGGACGGGGTATTCACCT
CTCGAAAAGACATTCAATTAGTAGCGGACCGCGCATACCCCCACGCAAAC
ACTCAATTCCTCTCCACCTACGGCGCGCTGTCGTCAGCTTCCAAATTTTA
TTCATTCGGATACTTGGACACTCTTCCCCCCCCGTTGTCCTCTTTCTCTC
CCTCCTCCTCCTCGTCCTACATTATCTCTGCAAAGGGAGTGAGCTGTCAG
ATGCAGCCCGGCCTTCCAGCACAGGGCACCGCCCTGCTGGTCCTCAGCCT
CGACAGCAACGGTAACAATAAGCAAGAGGGAGGGGCAGCAGAGAAAACGG
AGCGACTTCTGTCTTACACGCGGAAGGCAGCAGTGTTGGCCTCGGTAGGT
ATGAAGGCACAGGGGCAGCGAGTGGAGATCTCGACGCGGACGTCTTTCAA
CAGCTCCGGGCCGACACTGGCTCAGGTCACGATTGAAGAAGTGTTGGAGG
CGGAGATGGAGCAGAAAGGAGAACTTCGAGAAGGAGGAGGGCTGGAACGC
TTGCGACGCTATCTGAGACTCAAATATTTATCTGAGGGGGACCTGGATTT
TTTATCCTCTTCCTCCTTCGCTACTTCAACGTCCTCCCCCTCCAGCCCTG
AAAAGAGGTTGTGGACCCGCCTTTCTCTCCCTGTGAGGAAAGATGTAGAG
TTGGCGGTAGCTCTCGAGGTGGTCTCTCTGTGTTCACCGGCTTTGCAAAG
CGTGCAAGATAGCTTAGGTCGAGTGTGCCAGAGATTGCTCGAGGGAGGGA
GGGAGAGCGAGATAGACAGACATCGGTTGGGTTTGCTGCAGACGCTGTTG
CACGGCGAGATGTTGGCGTTGCGGGCGGTGGCCGAGCTGTTCATGTCAGA
GGTGGAAGCAAATTGA back to topCoding sequence (CDS) from alignment at chr2:1392458..1394473+ >NO02G05200.1 ID=NO02G05200.1|Name=NO02G05200.1|organism=Nannochloropsis oceanica|type=CDS|length=2016bp|location=Sequence derived from alignment at chr2:1392458..1394473+ (Nannochloropsis oceanica) ATGCAGTTTTGGAGGAGAAGACGAGCTTTCCTCGTCTGGATCGGCAATCT CTTCCTCTCTCTCCGGGGCGACGCCTTCGTGCCACTAGCACCTCGCTGCC CGAATGTAAAACAGCTTCAGGCTCTCGGTCGTCTTCTCGCAGCAGCCTCC TCCACCTTGCCCTCCGTGCTACTACCAGCCTTCCGACTGTCCCGCAGCGA TGCCGCTCTCGAAGAATTCCATATCTGGCTCCAAACCAAAGGAGGCCTGG ACCTATCTGCGTCACCCCTTGCTTTGCGCCGAATTCCCTTCCAGGAGAAC GACCCGAGCAGGGGCACCAACGCAACTCAAATTACAAACCTCGGCCTCTT CACAACCAGCGCAATTGAAAAAGATCAAATTCTCCTTGCCATTCCTGAGT CTTTAGTGCTAACATCGGAACTTCCTTCTGCTGCTCTTGAAACTTTGGCG GAGATCGCAAAGCTTGATCATATCGGTCGCTTGGCTCTTCGCATTGTATA CGAGGCCAGTCGCGCGCATGATTCCTCTTCCTCGCTCTCTTCTTCATCGT TGTCGTCCTCTTCAAAGTTTGAAAATGGAGGATGGCTTCCTTATCTCCGC GTGCTTCCGTCGCGTGATGACCTGAACCTTCCCTTTTTGTGGGACGAGAG GGAGGAGGAGAACGAGAACGAGGGAAGGGAAGAGGGGGAAGAGTGTCAAC AAAACGAAGGGCTCTTAGGCTTACTGGCACCAAGCCCGCTATACGACGAC ATAATTGAAGTCCGCGCTGAGATGCGACAAGAGCTGAAAAGCTTACGCGG TGCATGTACCCAAGCAATAGCCACTACTTCAACTACCACCATCACTACCA GCAGAGACGACCAGCATAACGACGATGAGGCATTGTCCCTTCATCACGTC CTCCTTCCCCTCCTCACCTGGCAGGTTTGGACGTGGGCCCGTGCCATCGC CATGTCCCGTCCGTATGTCTTCCAATCTGACGCCAATGCTGCCTTCAAGA CCAGCATTTGCAGCAGCAGCAGCAACGAGAATTGCAGTAGAACCAACGCA ACGATCTATCCGTTGCTCCGCCTCATTCCCTTGATAGACATGGCCAATCA CGATGACCGCGTTCACTATGCAGTCCAACCAGGGGACGGGGTATTCACCT CTCGAAAAGACATTCAATTAGTAGCGGACCGCGCATACCCCCACGCAAAC ACTCAATTCCTCTCCACCTACGGCGCGCTGTCGTCAGCTTCCAAATTTTA TTCATTCGGATACTTGGACACTCTTCCCCCCCCGTTGTCCTCTTTCTCTC CCTCCTCCTCCTCGTCCTACATTATCTCTGCAAAGGGAGTGAGCTGTCAG ATGCAGCCCGGCCTTCCAGCACAGGGCACCGCCCTGCTGGTCCTCAGCCT CGACAGCAACGGTAACAATAAGCAAGAGGGAGGGGCAGCAGAGAAAACGG AGCGACTTCTGTCTTACACGCGGAAGGCAGCAGTGTTGGCCTCGGTAGGT ATGAAGGCACAGGGGCAGCGAGTGGAGATCTCGACGCGGACGTCTTTCAA CAGCTCCGGGCCGACACTGGCTCAGGTCACGATTGAAGAAGTGTTGGAGG CGGAGATGGAGCAGAAAGGAGAACTTCGAGAAGGAGGAGGGCTGGAACGC TTGCGACGCTATCTGAGACTCAAATATTTATCTGAGGGGGACCTGGATTT TTTATCCTCTTCCTCCTTCGCTACTTCAACGTCCTCCCCCTCCAGCCCTG AAAAGAGGTTGTGGACCCGCCTTTCTCTCCCTGTGAGGAAAGATGTAGAG TTGGCGGTAGCTCTCGAGGTGGTCTCTCTGTGTTCACCGGCTTTGCAAAG CGTGCAAGATAGCTTAGGTCGAGTGTGCCAGAGATTGCTCGAGGGAGGGA GGGAGAGCGAGATAGACAGACATCGGTTGGGTTTGCTGCAGACGCTGTTG CACGGCGAGATGTTGGCGTTGCGGGCGGTGGCCGAGCTGTTCATGTCAGA GGTGGAAGCAAATTGA back to top
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