NO02G05200.1, NO02G05200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05200.1
Unique NameNO02G05200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2016
Alignment locationchr2:1392458..1394473 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1392458..1394473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G05200.1 vs.
Match: EWM30122.1 (hypothetical protein Naga_100994g2 [Nannochloropsis gaditana])

HSP 1 Score: 395.6 bits (1015), Expect = 3.100e-106
Identity = 272/561 (48.48%), Postives = 342/561 (60.96%), Query Frame = 0
Query:   45 LLAAASSTLPSVLLPAFRLSRSDAALEEFHIWLQTKGGLDLSASPLALRRIPFQ-ENDPSRGTNATQITNLGLFTTSAIEKDQILLAIPESLVLTSELPSAALETLAEIAKLDHIGRLALRIVYEASRAHDSSS--SLSSSSLSSSSKF-----ENGGWLPYLRVLPSRDDLNLPFLWDE--REEENENEGREE--GEECQQNEGLLGLLAPSPLYDDIIEVRAEMRQELKSLRGACTQAIATTSTTTITTSRDDQHNDDEALSLHHVLLPLLTWQVWTWARAIAMSRPYVFQSDANAAFKTSICSSSSNENCSRTNATIYPLLRLIPLIDMANHDDRVHYAVQPGDGVFTSRKDIQLVADRAYPHANTQFLSTYGALSSASKFYSFGYLDTLP-PPLSSFSPSSSSSYIISAKGVSCQMQPGL-PAQGTALLVLSLD-----SNGNNKQEGGAA--------------EKTERLLSYTRKAAVLASVGMKAQGQRVEISTRTSFNSS-GPTLAQVTIEEVLEAEMEQKGELREGGGLERLRRYLRLKYLSEGDLD-FLSS 571
            L A+A+ + P+    +F+LSR DAAL+ F  WL  KGG+DLSAS L LRR+    EN P          +L LFTT  IEKDQILLAIP S+VLTSELPS AL  LA  A LD +GRLALR+++E S+A   SS   L  S  +SSS F     +N GWLPY+RVLPSR+ ++LPFLW+E  RE   E+EG E+  G E    + LL LLAPSPLYDDI+ +R EMR EL+SLR A        +  T+ TS                +L  LTW+ W+WARA+AMSRPYV +S            S S E   R +    P+L+L+PL+DMANHDD +HYAVQPGDGVFTSR+++QLVADR YP     FLS+YG LSSA+KFYSFG+LDTL  PP +  SP SS   + +++       PGL PAQGTALLVLSLD       GN+K E   +              E+      + RK  VL+S+G+KA+GQRVEISTRT      G      T+      E  + G   +GGG++RLRRYLRLK++ E D+D FL+S
Sbjct:   54 LCASATPSAPA----SFQLSRDDAALDAFRHWLNVKGGIDLSASSLGLRRLAHDDENSPGNA-------DLELFTTRPIEKDQILLAIPPSIVLTSELPSPALRDLAGDAALDDMGRLALRLLHEVSQAGAGSSFQPLLFSHATSSSSFPTLPLDNSGWLPYVRVLPSRNQMDLPFLWEEDGREGGGEDEGEEDSCGPE-DSRDSLLALLAPSPLYDDIVALREEMRGELESLRKA------VLAHRTLPTSP--------------TILSCLTWENWSWARAVAMSRPYVLKSRP----------SRSTEEAGRPDFFGDPVLQLLPLLDMANHDDAIHYAVQPGDGVFTSREEVQLVADRDYPEVGAPFLSSYGPLSSATKFYSFGFLDTLSLPPSARSSPPSS---LFASRESREDDMPGLVPAQGTALLVLSLDGEGCTDEGNHKSEKRRSSPEMPEAAKEEMTREERRARNVFGRKLDVLSSMGLKAEGQRVEISTRTLLKRGLGSERMAATVRMEGGEEEGEGGREDDGGGMDRLRRYLRLKHMGEEDIDGFLNS 569          
The following BLAST results are available for this feature:
BLAST of NO02G05200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30122.13.100e-10648.48hypothetical protein Naga_100994g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05200NO02G05200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05200.1NO02G05200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05200.1.cds1NO02G05200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05200.1 ID=NO02G05200.1|Name=NO02G05200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2016bp
ATGCAGTTTTGGAGGAGAAGACGAGCTTTCCTCGTCTGGATCGGCAATCT
CTTCCTCTCTCTCCGGGGCGACGCCTTCGTGCCACTAGCACCTCGCTGCC
CGAATGTAAAACAGCTTCAGGCTCTCGGTCGTCTTCTCGCAGCAGCCTCC
TCCACCTTGCCCTCCGTGCTACTACCAGCCTTCCGACTGTCCCGCAGCGA
TGCCGCTCTCGAAGAATTCCATATCTGGCTCCAAACCAAAGGAGGCCTGG
ACCTATCTGCGTCACCCCTTGCTTTGCGCCGAATTCCCTTCCAGGAGAAC
GACCCGAGCAGGGGCACCAACGCAACTCAAATTACAAACCTCGGCCTCTT
CACAACCAGCGCAATTGAAAAAGATCAAATTCTCCTTGCCATTCCTGAGT
CTTTAGTGCTAACATCGGAACTTCCTTCTGCTGCTCTTGAAACTTTGGCG
GAGATCGCAAAGCTTGATCATATCGGTCGCTTGGCTCTTCGCATTGTATA
CGAGGCCAGTCGCGCGCATGATTCCTCTTCCTCGCTCTCTTCTTCATCGT
TGTCGTCCTCTTCAAAGTTTGAAAATGGAGGATGGCTTCCTTATCTCCGC
GTGCTTCCGTCGCGTGATGACCTGAACCTTCCCTTTTTGTGGGACGAGAG
GGAGGAGGAGAACGAGAACGAGGGAAGGGAAGAGGGGGAAGAGTGTCAAC
AAAACGAAGGGCTCTTAGGCTTACTGGCACCAAGCCCGCTATACGACGAC
ATAATTGAAGTCCGCGCTGAGATGCGACAAGAGCTGAAAAGCTTACGCGG
TGCATGTACCCAAGCAATAGCCACTACTTCAACTACCACCATCACTACCA
GCAGAGACGACCAGCATAACGACGATGAGGCATTGTCCCTTCATCACGTC
CTCCTTCCCCTCCTCACCTGGCAGGTTTGGACGTGGGCCCGTGCCATCGC
CATGTCCCGTCCGTATGTCTTCCAATCTGACGCCAATGCTGCCTTCAAGA
CCAGCATTTGCAGCAGCAGCAGCAACGAGAATTGCAGTAGAACCAACGCA
ACGATCTATCCGTTGCTCCGCCTCATTCCCTTGATAGACATGGCCAATCA
CGATGACCGCGTTCACTATGCAGTCCAACCAGGGGACGGGGTATTCACCT
CTCGAAAAGACATTCAATTAGTAGCGGACCGCGCATACCCCCACGCAAAC
ACTCAATTCCTCTCCACCTACGGCGCGCTGTCGTCAGCTTCCAAATTTTA
TTCATTCGGATACTTGGACACTCTTCCCCCCCCGTTGTCCTCTTTCTCTC
CCTCCTCCTCCTCGTCCTACATTATCTCTGCAAAGGGAGTGAGCTGTCAG
ATGCAGCCCGGCCTTCCAGCACAGGGCACCGCCCTGCTGGTCCTCAGCCT
CGACAGCAACGGTAACAATAAGCAAGAGGGAGGGGCAGCAGAGAAAACGG
AGCGACTTCTGTCTTACACGCGGAAGGCAGCAGTGTTGGCCTCGGTAGGT
ATGAAGGCACAGGGGCAGCGAGTGGAGATCTCGACGCGGACGTCTTTCAA
CAGCTCCGGGCCGACACTGGCTCAGGTCACGATTGAAGAAGTGTTGGAGG
CGGAGATGGAGCAGAAAGGAGAACTTCGAGAAGGAGGAGGGCTGGAACGC
TTGCGACGCTATCTGAGACTCAAATATTTATCTGAGGGGGACCTGGATTT
TTTATCCTCTTCCTCCTTCGCTACTTCAACGTCCTCCCCCTCCAGCCCTG
AAAAGAGGTTGTGGACCCGCCTTTCTCTCCCTGTGAGGAAAGATGTAGAG
TTGGCGGTAGCTCTCGAGGTGGTCTCTCTGTGTTCACCGGCTTTGCAAAG
CGTGCAAGATAGCTTAGGTCGAGTGTGCCAGAGATTGCTCGAGGGAGGGA
GGGAGAGCGAGATAGACAGACATCGGTTGGGTTTGCTGCAGACGCTGTTG
CACGGCGAGATGTTGGCGTTGCGGGCGGTGGCCGAGCTGTTCATGTCAGA
GGTGGAAGCAAATTGA
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protein sequence of NO02G05200.1

>NO02G05200.1-protein ID=NO02G05200.1-protein|Name=NO02G05200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=672bp
MQFWRRRRAFLVWIGNLFLSLRGDAFVPLAPRCPNVKQLQALGRLLAAAS
STLPSVLLPAFRLSRSDAALEEFHIWLQTKGGLDLSASPLALRRIPFQEN
DPSRGTNATQITNLGLFTTSAIEKDQILLAIPESLVLTSELPSAALETLA
EIAKLDHIGRLALRIVYEASRAHDSSSSLSSSSLSSSSKFENGGWLPYLR
VLPSRDDLNLPFLWDEREEENENEGREEGEECQQNEGLLGLLAPSPLYDD
IIEVRAEMRQELKSLRGACTQAIATTSTTTITTSRDDQHNDDEALSLHHV
LLPLLTWQVWTWARAIAMSRPYVFQSDANAAFKTSICSSSSNENCSRTNA
TIYPLLRLIPLIDMANHDDRVHYAVQPGDGVFTSRKDIQLVADRAYPHAN
TQFLSTYGALSSASKFYSFGYLDTLPPPLSSFSPSSSSSYIISAKGVSCQ
MQPGLPAQGTALLVLSLDSNGNNKQEGGAAEKTERLLSYTRKAAVLASVG
MKAQGQRVEISTRTSFNSSGPTLAQVTIEEVLEAEMEQKGELREGGGLER
LRRYLRLKYLSEGDLDFLSSSSFATSTSSPSSPEKRLWTRLSLPVRKDVE
LAVALEVVSLCSPALQSVQDSLGRVCQRLLEGGRESEIDRHRLGLLQTLL
HGEMLALRAVAELFMSEVEAN*
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mRNA from alignment at chr2:1392458..1394473+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05200.1 ID=NO02G05200.1|Name=NO02G05200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2016bp|location=Sequence derived from alignment at chr2:1392458..1394473+ (Nannochloropsis oceanica)
ATGCAGTTTTGGAGGAGAAGACGAGCTTTCCTCGTCTGGATCGGCAATCT CTTCCTCTCTCTCCGGGGCGACGCCTTCGTGCCACTAGCACCTCGCTGCC CGAATGTAAAACAGCTTCAGGCTCTCGGTCGTCTTCTCGCAGCAGCCTCC TCCACCTTGCCCTCCGTGCTACTACCAGCCTTCCGACTGTCCCGCAGCGA TGCCGCTCTCGAAGAATTCCATATCTGGCTCCAAACCAAAGGAGGCCTGG ACCTATCTGCGTCACCCCTTGCTTTGCGCCGAATTCCCTTCCAGGAGAAC GACCCGAGCAGGGGCACCAACGCAACTCAAATTACAAACCTCGGCCTCTT CACAACCAGCGCAATTGAAAAAGATCAAATTCTCCTTGCCATTCCTGAGT CTTTAGTGCTAACATCGGAACTTCCTTCTGCTGCTCTTGAAACTTTGGCG GAGATCGCAAAGCTTGATCATATCGGTCGCTTGGCTCTTCGCATTGTATA CGAGGCCAGTCGCGCGCATGATTCCTCTTCCTCGCTCTCTTCTTCATCGT TGTCGTCCTCTTCAAAGTTTGAAAATGGAGGATGGCTTCCTTATCTCCGC GTGCTTCCGTCGCGTGATGACCTGAACCTTCCCTTTTTGTGGGACGAGAG GGAGGAGGAGAACGAGAACGAGGGAAGGGAAGAGGGGGAAGAGTGTCAAC AAAACGAAGGGCTCTTAGGCTTACTGGCACCAAGCCCGCTATACGACGAC ATAATTGAAGTCCGCGCTGAGATGCGACAAGAGCTGAAAAGCTTACGCGG TGCATGTACCCAAGCAATAGCCACTACTTCAACTACCACCATCACTACCA GCAGAGACGACCAGCATAACGACGATGAGGCATTGTCCCTTCATCACGTC CTCCTTCCCCTCCTCACCTGGCAGGTTTGGACGTGGGCCCGTGCCATCGC CATGTCCCGTCCGTATGTCTTCCAATCTGACGCCAATGCTGCCTTCAAGA CCAGCATTTGCAGCAGCAGCAGCAACGAGAATTGCAGTAGAACCAACGCA ACGATCTATCCGTTGCTCCGCCTCATTCCCTTGATAGACATGGCCAATCA CGATGACCGCGTTCACTATGCAGTCCAACCAGGGGACGGGGTATTCACCT CTCGAAAAGACATTCAATTAGTAGCGGACCGCGCATACCCCCACGCAAAC ACTCAATTCCTCTCCACCTACGGCGCGCTGTCGTCAGCTTCCAAATTTTA TTCATTCGGATACTTGGACACTCTTCCCCCCCCGTTGTCCTCTTTCTCTC CCTCCTCCTCCTCGTCCTACATTATCTCTGCAAAGGGAGTGAGCTGTCAG ATGCAGCCCGGCCTTCCAGCACAGGGCACCGCCCTGCTGGTCCTCAGCCT CGACAGCAACGGTAACAATAAGCAAGAGGGAGGGGCAGCAGAGAAAACGG AGCGACTTCTGTCTTACACGCGGAAGGCAGCAGTGTTGGCCTCGGTAGGT ATGAAGGCACAGGGGCAGCGAGTGGAGATCTCGACGCGGACGTCTTTCAA CAGCTCCGGGCCGACACTGGCTCAGGTCACGATTGAAGAAGTGTTGGAGG CGGAGATGGAGCAGAAAGGAGAACTTCGAGAAGGAGGAGGGCTGGAACGC TTGCGACGCTATCTGAGACTCAAATATTTATCTGAGGGGGACCTGGATTT TTTATCCTCTTCCTCCTTCGCTACTTCAACGTCCTCCCCCTCCAGCCCTG AAAAGAGGTTGTGGACCCGCCTTTCTCTCCCTGTGAGGAAAGATGTAGAG TTGGCGGTAGCTCTCGAGGTGGTCTCTCTGTGTTCACCGGCTTTGCAAAG CGTGCAAGATAGCTTAGGTCGAGTGTGCCAGAGATTGCTCGAGGGAGGGA GGGAGAGCGAGATAGACAGACATCGGTTGGGTTTGCTGCAGACGCTGTTG CACGGCGAGATGTTGGCGTTGCGGGCGGTGGCCGAGCTGTTCATGTCAGA GGTGGAAGCAAATTGA
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Coding sequence (CDS) from alignment at chr2:1392458..1394473+

>NO02G05200.1 ID=NO02G05200.1|Name=NO02G05200.1|organism=Nannochloropsis oceanica|type=CDS|length=2016bp|location=Sequence derived from alignment at chr2:1392458..1394473+ (Nannochloropsis oceanica)
ATGCAGTTTTGGAGGAGAAGACGAGCTTTCCTCGTCTGGATCGGCAATCT
CTTCCTCTCTCTCCGGGGCGACGCCTTCGTGCCACTAGCACCTCGCTGCC
CGAATGTAAAACAGCTTCAGGCTCTCGGTCGTCTTCTCGCAGCAGCCTCC
TCCACCTTGCCCTCCGTGCTACTACCAGCCTTCCGACTGTCCCGCAGCGA
TGCCGCTCTCGAAGAATTCCATATCTGGCTCCAAACCAAAGGAGGCCTGG
ACCTATCTGCGTCACCCCTTGCTTTGCGCCGAATTCCCTTCCAGGAGAAC
GACCCGAGCAGGGGCACCAACGCAACTCAAATTACAAACCTCGGCCTCTT
CACAACCAGCGCAATTGAAAAAGATCAAATTCTCCTTGCCATTCCTGAGT
CTTTAGTGCTAACATCGGAACTTCCTTCTGCTGCTCTTGAAACTTTGGCG
GAGATCGCAAAGCTTGATCATATCGGTCGCTTGGCTCTTCGCATTGTATA
CGAGGCCAGTCGCGCGCATGATTCCTCTTCCTCGCTCTCTTCTTCATCGT
TGTCGTCCTCTTCAAAGTTTGAAAATGGAGGATGGCTTCCTTATCTCCGC
GTGCTTCCGTCGCGTGATGACCTGAACCTTCCCTTTTTGTGGGACGAGAG
GGAGGAGGAGAACGAGAACGAGGGAAGGGAAGAGGGGGAAGAGTGTCAAC
AAAACGAAGGGCTCTTAGGCTTACTGGCACCAAGCCCGCTATACGACGAC
ATAATTGAAGTCCGCGCTGAGATGCGACAAGAGCTGAAAAGCTTACGCGG
TGCATGTACCCAAGCAATAGCCACTACTTCAACTACCACCATCACTACCA
GCAGAGACGACCAGCATAACGACGATGAGGCATTGTCCCTTCATCACGTC
CTCCTTCCCCTCCTCACCTGGCAGGTTTGGACGTGGGCCCGTGCCATCGC
CATGTCCCGTCCGTATGTCTTCCAATCTGACGCCAATGCTGCCTTCAAGA
CCAGCATTTGCAGCAGCAGCAGCAACGAGAATTGCAGTAGAACCAACGCA
ACGATCTATCCGTTGCTCCGCCTCATTCCCTTGATAGACATGGCCAATCA
CGATGACCGCGTTCACTATGCAGTCCAACCAGGGGACGGGGTATTCACCT
CTCGAAAAGACATTCAATTAGTAGCGGACCGCGCATACCCCCACGCAAAC
ACTCAATTCCTCTCCACCTACGGCGCGCTGTCGTCAGCTTCCAAATTTTA
TTCATTCGGATACTTGGACACTCTTCCCCCCCCGTTGTCCTCTTTCTCTC
CCTCCTCCTCCTCGTCCTACATTATCTCTGCAAAGGGAGTGAGCTGTCAG
ATGCAGCCCGGCCTTCCAGCACAGGGCACCGCCCTGCTGGTCCTCAGCCT
CGACAGCAACGGTAACAATAAGCAAGAGGGAGGGGCAGCAGAGAAAACGG
AGCGACTTCTGTCTTACACGCGGAAGGCAGCAGTGTTGGCCTCGGTAGGT
ATGAAGGCACAGGGGCAGCGAGTGGAGATCTCGACGCGGACGTCTTTCAA
CAGCTCCGGGCCGACACTGGCTCAGGTCACGATTGAAGAAGTGTTGGAGG
CGGAGATGGAGCAGAAAGGAGAACTTCGAGAAGGAGGAGGGCTGGAACGC
TTGCGACGCTATCTGAGACTCAAATATTTATCTGAGGGGGACCTGGATTT
TTTATCCTCTTCCTCCTTCGCTACTTCAACGTCCTCCCCCTCCAGCCCTG
AAAAGAGGTTGTGGACCCGCCTTTCTCTCCCTGTGAGGAAAGATGTAGAG
TTGGCGGTAGCTCTCGAGGTGGTCTCTCTGTGTTCACCGGCTTTGCAAAG
CGTGCAAGATAGCTTAGGTCGAGTGTGCCAGAGATTGCTCGAGGGAGGGA
GGGAGAGCGAGATAGACAGACATCGGTTGGGTTTGCTGCAGACGCTGTTG
CACGGCGAGATGTTGGCGTTGCGGGCGGTGGCCGAGCTGTTCATGTCAGA
GGTGGAAGCAAATTGA
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Synonyms
Publications