NO02G05190.1, NO02G05190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05190.1
Unique NameNO02G05190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1191
Alignment locationchr2:1390858..1392289 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1390858..1392289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO02G05190.1 vs.
Match: EWM30121.1 (hydroxyacylglutathione mitochondrial [Nannochloropsis gaditana])

HSP 1 Score: 486.5 bits (1251), Expect = 7.900e-134
Identity = 253/357 (70.87%), Postives = 292/357 (81.79%), Query Frame = 0 
Query:   48 HQRQYLYHRSTTFVSTPMVPSTRLLLRSGH----AILDAAHRALQGTSFTRPSLFGL-ATGMSGLSATASTS---SCFPSTTSLPPCTRVIPVPILSDNFAYLIVDPQSGKAACVDPAEPEKVLAAAKREGIQLSALLCTHKHWDHSGGNEEMARLIPGLDVVTTEFEDIPAATVRLGDDDVYTLGSLSIRALHTPCHTKGHVLFLVTPQDETEIREAKTAPVLFSGDTLFVGGCGRFFEGDGQQMVEALMGRVAKLPPQTLVYCGHEYTQANLAFALSVEPDNAALQAKAAWASSILQQGGFTVPSTVGSELDTNPFMRVAQEGVIKAARERGGAKGGNPAEVMTALREMKNNFKG 397
            H  +  Y RS+ FV+ PM+ S R LL SG     +I  +  R+L+ + F RP L GL  TGM  L+A  ++S   S   +T +LPPC RVIPVPILSDNFAYL+VDPQ+GKAACVDPAEP KVLAAA+REGI+LS LLCTHKHWDH+GGNEEMAR++PGL+VVTT+FEDIPAAT+RLGDDDVYTLGSLS+RAL+TPCHTKGHVLFLVTPQDE     + TAPVLFSGDTLFVGGCGRFFEGDG QMVEALMGRVA L P+TLVYCGHEYTQ+NLAFA+SVEP+NAAL+AK A A++ L+ G  TVPSTVGSEL+ NPFMRV +  VIKAARE+GGA G +P  VMTALREMKN FKG
Sbjct:   46 HDSRPSYGRSS-FVNPPMLSSLRPLLHSGQILSGSIKRSLLRSLKRSPFHRPGLTGLIVTGMGTLAAAGTSSPPASSCSTTPALPPCARVIPVPILSDNFAYLVVDPQTGKAACVDPAEPAKVLAAAQREGIKLSTLLCTHKHWDHAGGNEEMARMLPGLEVVTTKFEDIPAATIRLGDDDVYTLGSLSVRALYTPCHTKGHVLFLVTPQDEAGPGTSPTAPVLFSGDTLFVGGCGRFFEGDGAQMVEALMGRVASLSPETLVYCGHEYTQSNLAFAMSVEPENAALRAKIAVATAALRSGQPTVPSTVGSELEINPFMRVGEAAVIKAAREKGGAAGEDPVSVMTALREMKNIFKG 401
The following BLAST results are available for this feature:
BLAST of NO02G05190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30121.17.900e-13470.87hydroxyacylglutathione mitochondrial [Nannochlorop... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05190NO02G05190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05190.1NO02G05190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05190.1.cds1NO02G05190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05190.1.cds2NO02G05190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05190.1.cds3NO02G05190.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05190.1 ID=NO02G05190.1|Name=NO02G05190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1191bp
ATGACCAGACTGCGAGTGCAGCAGTCATCCTCGTCGTTGTCAAGAAGAGG
AAGCGTTTTCACGTTAACCTCCTTCTTCCTTGCCGGCTTGTGGGTTGCGT
CTGCCTCGACTTCACAGGGAGCATCTCCTTCGGTATTAAACCACCAACGG
CAATATCTCTACCACCGATCGACCACTTTCGTCTCGACGCCGATGGTGCC
CTCAACCCGCTTGTTGTTGCGCAGCGGCCACGCCATCCTGGACGCCGCTC
ACCGTGCATTGCAAGGCACCTCTTTTACCCGCCCCTCGCTCTTTGGCCTG
GCTACCGGCATGTCAGGTCTTAGCGCCACCGCTTCGACCTCATCGTGCTT
CCCTTCTACCACCTCCCTCCCGCCCTGCACCCGCGTGATCCCCGTCCCCA
TTCTCAGCGACAATTTTGCTTACCTCATCGTCGACCCACAAAGCGGCAAG
GCCGCATGTGTGGACCCGGCCGAACCTGAAAAGGTCCTCGCGGCCGCCAA
ACGGGAAGGCATCCAGCTCTCCGCCCTCCTCTGCACGCACAAGCATTGGG
ACCACTCGGGAGGGAACGAGGAAATGGCTCGTTTGATTCCAGGCTTGGAC
GTCGTGACGACGGAATTCGAGGATATTCCCGCGGCGACTGTGCGTTTGGG
AGATGATGATGTGTATACCTTGGGTTCACTAAGCATCCGAGCGCTTCATA
CTCCCTGTCACACCAAGGGGCACGTCCTCTTCCTCGTCACCCCGCAGGAC
GAGACAGAGATACGAGAGGCGAAAACAGCCCCTGTATTGTTCTCGGGGGA
CACGCTGTTTGTCGGTGGATGTGGGCGTTTTTTTGAGGGGGATGGGCAAC
AGATGGTGGAGGCTTTGATGGGCCGCGTGGCCAAGCTCCCGCCGCAGACG
CTTGTGTATTGCGGACACGAATACACACAGGCCAACCTAGCTTTCGCTCT
CTCCGTCGAACCTGACAACGCCGCACTCCAAGCAAAGGCTGCCTGGGCCA
GCTCGATACTGCAGCAAGGGGGTTTCACAGTCCCTTCCACCGTTGGGAGC
GAGTTGGACACCAATCCATTTATGAGGGTGGCGCAGGAGGGGGTCATCAA
GGCAGCGAGGGAGAGGGGGGGGGCGAAGGGGGGAAATCCGGCAGAGGTGA
TGACGGCGTTGCGGGAAATGAAAAATAATTTCAAAGGCTAG
back to top

protein sequence of NO02G05190.1

>NO02G05190.1-protein ID=NO02G05190.1-protein|Name=NO02G05190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=397bp
MTRLRVQQSSSSLSRRGSVFTLTSFFLAGLWVASASTSQGASPSVLNHQR
QYLYHRSTTFVSTPMVPSTRLLLRSGHAILDAAHRALQGTSFTRPSLFGL
ATGMSGLSATASTSSCFPSTTSLPPCTRVIPVPILSDNFAYLIVDPQSGK
AACVDPAEPEKVLAAAKREGIQLSALLCTHKHWDHSGGNEEMARLIPGLD
VVTTEFEDIPAATVRLGDDDVYTLGSLSIRALHTPCHTKGHVLFLVTPQD
ETEIREAKTAPVLFSGDTLFVGGCGRFFEGDGQQMVEALMGRVAKLPPQT
LVYCGHEYTQANLAFALSVEPDNAALQAKAAWASSILQQGGFTVPSTVGS
ELDTNPFMRVAQEGVIKAARERGGAKGGNPAEVMTALREMKNNFKG*
back to top

mRNA from alignment at chr2:1390858..1392289-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05190.1 ID=NO02G05190.1|Name=NO02G05190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1432bp|location=Sequence derived from alignment at chr2:1390858..1392289- (Nannochloropsis oceanica)
ATGACCAGACTGCGAGTGCAGCAGTCATCCTCGTCGTTGTCAAGAAGAGG
AAGCGTTTTCACGTTAACCTCCTTCTTCCTTGCCGGCTTGTGGGTTGCGT
CTGCCTCGACTTCACAGGGAGCATCTCCTTCGGTATTAAACCACCAACGG
CAATATCTCTACCACCGATCGACCACTTTCGTCTCGACGCCGATGGTGCC
CTCAACCCGCTTGTTGTTGCGCAGCGGTACGGCTTCCTTGTGCCGGCTGA
ATTCGTTGCAGCAGGAAATGGCAATCGAATATTCACTCTTTCACGTACTT
CCCAATTTTACGCCCAACATCACATAGGCCACGCCATCCTGGACGCCGCT
CACCGTGCATTGCAAGGCACCTCTTTTACCCGCCCCTCGCTCTTTGGCCT
GGCTACCGGCATGTCAGGTCTTAGCGCCACCGCTTCGACCTCATCGTGCT
TCCCTTCTACCACCTCCCTCCCGCCCTGCACCCGCGTGATCCCCGTCCCC
ATTCTCAGCGACAATTTTGCTTACCTCATCGTCGACCCACAAAGCGGCAA
GGCCGCATGTGTGGACCCGGCCGAACCTGAAAAGGTCCTCGCGGCCGCCA
AACGGGAAGGCATCCAGCTCTCCGCCCTCCTCTGCACGCACAAGCATTGG
GACCACTCGGGAGGGAACGAGGAAATGGCTCGTTTGATTCCAGGCTTGGA
CGTCGTGACGACGGAATTCGAGGATATTCCCGCGGCGACTGTGCGTTTGG
GAGATGATGATGTGTATACCTTGGGTTCACTAAGCATCCGAGCGCTTCAT
ACTCCCTGTCACACCAAGGGGCACGTCCTCTTCCTCGTCACCCCGCAGGA
CGAGACAGAGATACGAGAGGCGAAAACAGCCCCTGTATTGTTCTCGGGGG
ACACGCTGTTTGTCGGTGGATGTGGGCGTTTTTTTGAGGGGGATGGGCAA
CAGATGGTGGAGGCTTTGATGGGCCGCGTGGCCAAGCTCCCGCCGCAGAC
GCTTGTGTATTGCGGGTAATTAATTCTTCTCTTACTTATTCCCTGTCTTT
ATGTCTCTTTAATAGAATGGGAAGTGATCAATAGTATGGCTCAGAGTCAT
GTGTATCTCATAGTCACCTCCCTTCCTCCCTTCCCCCTTCATCTCCCCTC
TGCAGACACGAATACACACAGGCCAACCTAGCTTTCGCTCTCTCCGTCGA
ACCTGACAACGCCGCACTCCAAGCAAAGGCTGCCTGGGCCAGCTCGATAC
TGCAGCAAGGGGGTTTCACAGTCCCTTCCACCGTTGGGAGCGAGTTGGAC
ACCAATCCATTTATGAGGGTGGCGCAGGAGGGGGTCATCAAGGCAGCGAG
GGAGAGGGGGGGGGCGAAGGGGGGAAATCCGGCAGAGGTGATGACGGCGT
TGCGGGAAATGAAAAATAATTTCAAAGGCTAG
back to top

Coding sequence (CDS) from alignment at chr2:1390858..1392289-

>NO02G05190.1 ID=NO02G05190.1|Name=NO02G05190.1|organism=Nannochloropsis oceanica|type=CDS|length=1191bp|location=Sequence derived from alignment at chr2:1390858..1392289- (Nannochloropsis oceanica)
ATGACCAGACTGCGAGTGCAGCAGTCATCCTCGTCGTTGTCAAGAAGAGG
AAGCGTTTTCACGTTAACCTCCTTCTTCCTTGCCGGCTTGTGGGTTGCGT
CTGCCTCGACTTCACAGGGAGCATCTCCTTCGGTATTAAACCACCAACGG
CAATATCTCTACCACCGATCGACCACTTTCGTCTCGACGCCGATGGTGCC
CTCAACCCGCTTGTTGTTGCGCAGCGGCCACGCCATCCTGGACGCCGCTC
ACCGTGCATTGCAAGGCACCTCTTTTACCCGCCCCTCGCTCTTTGGCCTG
GCTACCGGCATGTCAGGTCTTAGCGCCACCGCTTCGACCTCATCGTGCTT
CCCTTCTACCACCTCCCTCCCGCCCTGCACCCGCGTGATCCCCGTCCCCA
TTCTCAGCGACAATTTTGCTTACCTCATCGTCGACCCACAAAGCGGCAAG
GCCGCATGTGTGGACCCGGCCGAACCTGAAAAGGTCCTCGCGGCCGCCAA
ACGGGAAGGCATCCAGCTCTCCGCCCTCCTCTGCACGCACAAGCATTGGG
ACCACTCGGGAGGGAACGAGGAAATGGCTCGTTTGATTCCAGGCTTGGAC
GTCGTGACGACGGAATTCGAGGATATTCCCGCGGCGACTGTGCGTTTGGG
AGATGATGATGTGTATACCTTGGGTTCACTAAGCATCCGAGCGCTTCATA
CTCCCTGTCACACCAAGGGGCACGTCCTCTTCCTCGTCACCCCGCAGGAC
GAGACAGAGATACGAGAGGCGAAAACAGCCCCTGTATTGTTCTCGGGGGA
CACGCTGTTTGTCGGTGGATGTGGGCGTTTTTTTGAGGGGGATGGGCAAC
AGATGGTGGAGGCTTTGATGGGCCGCGTGGCCAAGCTCCCGCCGCAGACG
CTTGTGTATTGCGGACACGAATACACACAGGCCAACCTAGCTTTCGCTCT
CTCCGTCGAACCTGACAACGCCGCACTCCAAGCAAAGGCTGCCTGGGCCA
GCTCGATACTGCAGCAAGGGGGTTTCACAGTCCCTTCCACCGTTGGGAGC
GAGTTGGACACCAATCCATTTATGAGGGTGGCGCAGGAGGGGGTCATCAA
GGCAGCGAGGGAGAGGGGGGGGGCGAAGGGGGGAAATCCGGCAGAGGTGA
TGACGGCGTTGCGGGAAATGAAAAATAATTTCAAAGGCTAG
back to top
Synonyms
Publications