|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:1378059..1381139 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G05150.2 vs.
Match: XP_005855554.1 (methylthioribose-1-phosphate isomerase [Nannochloropsis gaditana CCMP526]; EKU20803.1 methylthioribose-1-phosphate isomerase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 706.8 bits (1823), Expect = 5.700e-200 Identity = 383/540 (70.93%), Postives = 429/540 (79.44%), Query Frame = 0
Query: 22 ALQSLIYTPRSAQTGPPSLQVLDQLHVPRSKAYVPIHTTQDAWKVIRDMNVRGAPLIAIVAILSLAVEMSAK-----EEGFASLDAASTWLAEAAEYLKTSRPTAVNLFTAMDEVVTLSQAVVEGERGKGASNSKAATPLVLAVVTFAERMLKEDVESNQAIGNHGAMAILSNTLPGKGVKIMTHCNTGSLATAGYGTALGVIRSLHKTGRLDRVFCTETRPYNQGARLTAFELVQDRLPGTLVADSMASFLMASKGLDAVVVGADRIAANGDTANKIGTYQLAVAAKHHGVAFYVAAPFTSFDLTLSSGSQIVIEERPAQELTHVQSVQVAPEGIAVWNPGFDVTPAALITGIITERGVIYPSPVAGTAADA-------DAGNERAKWGIT-------AFDVQGFLQGEGAHGFPS----ASAPISSSSSSTTTTIKAPKEYEPLNEGKLGPFLQAHVPHVWRMLGADTLSDVAVTEVGDGNLNFVFLVTGPKTTVVVKQALPYVRCVGESWPLTLERAFYEEAALEEEGKRTPGLVPE 539
ALQSLIYTPRS Q+ PSL+VLDQL +P KAY+P+ TTQDAWKVIRDMNVRGAPLIAIVA+LSLAVEMSAK ++GFASL AA+ WL EA YLKTSRPTAVNLFTAMDEV+ LSQA + GA AA PLV AVV FAE+MLKEDVESNQAIG+HGA AIL+N LPG+GVK++THCNTGSLATAGYGTALGVIRSLHK GRL RVFCTETRPYNQGARLTAFELVQD+LPGTL+ DSM SFLMA++GLDA+VVGADRIAANGDTANKIGTYQLAV AKHHGVAFYVAAPFTSFDL+L+SG QI IEERPA+ELT VQ +QVAP+ IAVWNPGFDVTPA+LITGIITE+GVI+P P AG A DA + G R K T FD+ GFL GEGAH PS A+AP S + YE L+E + FL+ HV VW +LGA T ++V ++EVGDGNLN VF+V GPK TVVVKQALPYVRCVGESWPLTL+RAFYE AAL+EEG+ TP LVPE
Sbjct: 12 ALQSLIYTPRSPQSEQPSLEVLDQLLLPNKKAYIPVKTTQDAWKVIRDMNVRGAPLIAIVAVLSLAVEMSAKSNVQGKDGFASLQAAAAWLQEAVVYLKTSRPTAVNLFTAMDEVLLLSQATTKKHDAVGACVQNAA-PLVSAVVRFAEQMLKEDVESNQAIGDHGAAAILANLLPGQGVKVLTHCNTGSLATAGYGTALGVIRSLHKEGRLARVFCTETRPYNQGARLTAFELVQDQLPGTLITDSMVSFLMATQGLDAIVVGADRIAANGDTANKIGTYQLAVTAKHHGVAFYVAAPFTSFDLSLASGDQIEIEERPARELTQVQGIQVAPQEIAVWNPGFDVTPASLITGIITEKGVIHPFPSAG-ATDAKPRVPTQETGEARRKSNGTVGHGRRMTFDIPGFLNGEGAHQIPSSLPDAAAPTPSMELDSANLPSPASGYEALSEENVALFLEKHVRDVWDLLGARTGAEVEISEVGDGNLNLVFIVRGPKNTVVVKQALPYVRCVGESWPLTLDRAFYEAAALQEEGRHTPRLVPE 549
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G05150.2 ID=NO02G05150.2|Name=NO02G05150.2|organism=Nannochloropsis oceanica|type=mRNA|length=2899bp AGGTGCTGTTGGGCGACATTTTTTCAAGAACGTGCCGTTGCACCATGACG GCCGCCAACAACCTCCCCTCTTCTTTTTCCTCCTCCTCCTCCTCCTCCGC AACCCCGGCCCTCCAGTCCCTCATTTACACACCGCGTTCGGCGCAGACAG GGCCACCCTCCTTGCAAGTCCTGGACCAGCTACATGTGCCCCGTAGTAAG GCGTACGTTCCCATTCATACAACGCAAGACGCATGGAAGGTCATCCGGGA TATGAATGTGCGAGGTGCGCCCTTGATTGCCATCGTCGCCATCTTGAGCC TGGCCGTGGAGATGAGCGCAAAGGAGGAGGGTTTTGCCTCGCTGGATGCT GCCAGTACGTGGCTTGCCGAGGCCGCAGAGTATCTGAAGACCTCAAGGCC GACTGCTGTCAATCTCTTCACGGCCATGGACGAAGTGGTAACGCTGAGCC AGGCAGTGGTGGAGGGGGAGAGGGGGAAAGGCGCCAGTAACAGCAAGGCC GCCACACCCTTGGTGCTTGCTGTCGTGACATTTGCCGAGCGCATGCTCAA GGAAGACGTCGAGTCAAACCAGGCTATTGGAAACCATGGGGCAATGGCTA TTTTATCGAATACCTTGCCGGGGAAGGGGGTAAAAATCATGACACACTGC AACACGGGCTCACTCGCTACAGCGGGGTACGGCACGGCATTAGGCGTCAT TCGCTCACTGCACAAAACGGGACGACTTGATCGTGTCTTTTGCACAGAAA CCCGTCCGTACAATCAAGGTGCGCGTTTGACGGCTTTCGAACTGGTCCAA GACCGACTGCCTGGGACGTTGGTGGCCGACTCGATGGCCTCTTTCCTCAT GGCTTCCAAGGGGCTGGATGCTGTGGTGGTGGGTGCTGACCGCATTGCCG CCAATGGCGACACGGCAAACAAGATAGGGACGTACCAGTTGGCTGTGGCG GCGAAGCACCACGGGGTGGCATTTTACGTGGCTGCTCCGTTCACCTCTTT TGATTTGACCTTATCTTCAGGGAGTCAGATTGTGATTGAGGAGCGACCCG CACAAGAGTTGACGCACGTTCAGAGTGTGCAAGTGGCTCCTGAGGGGATT GCGGTGTGGAACCCGGGGTTTGACGTGACCCCTGCGGCATTGATCACGGG AATCATTACTGAGAGGGGCGTGATATACCCCTCCCCTGTTGCTGGTACTG CTGCTGATGCTGATGCAGGGAACGAGAGGGCTAAGTGGGGGATCACAGCT TTCGATGTCCAGGGGTTCTTGCAAGGCGAAGGAGCACATGGCTTTCCTTC CGCCTCCGCCCCCATTTCTTCGTCCTCCTCCTCCACCACCACCACCATAA AGGCTCCCAAGGAATATGAGCCTCTGAATGAAGGCAAGCTTGGCCCCTTC CTCCAAGCTCACGTTCCTCATGTCTGGCGTATGCTAGGAGCAGACACATT AAGCGACGTGGCAGTCACCGAGGTAGGAGATGGGAATCTGAACTTCGTTT TCTTGGTCACAGGGCCGAAGACAACGGTGGTGGTGAAGCAGGCCTTGCCT TATGTGCGGTGTGTGGGGGAGTCCTGGCCATTGACCTTAGAGAGAGCTTT TTATGAAGAGGCGGCGTTGGAGGAGGAAGGAAAGCGGACACCAGGGTTGG TGCCGGAGGTAGGAAGGGAGGGAGAGAGGGAGGGAGGGAGGAAGGTAGAA AATGAAGGACTTTGTCTCTCTCTTAAACTTTTTACTCTGCGATTGGTGAC TTACATCCCCACGCTTCCAATATATCACTACTCGTCTTTCCTCTCCTCTC TCCCGCCCGCCCTCTCTGCCCCCAGGTCTACTACTTCAGCAAGCGCTTGG CCTTAATCATCATGCAGTACGTCCCTCCTCCCCACATCATCCTCCGCAAA GCCCTCATTCGTGGGGATACTCTCTCCACCCTCGCCACGGACTTAAGCGA TTTCCTCGCGCTCAATCTTTTCTATACCTCCTCTCTTCACCTTACGGGCC CCGCCAAACGCGCTGCTGTCTCCTTTTGGTCGGGGAACCATGGGCTTTGC GCCCTGACTGAAGCCGTCGTCTTCACAGAGCCCTATTGCAATGACGTCGT ACACAACCGCTGGACAAGCCCCGCGCTCGATGACATCGTCAGAGAGCTGC GAAATGATCTGCCCTTGAAGCTGGCAGTCGGTAATTTGAAGGCCAAGTTC ATGGACGCGACAGAAGCCTTGTGCCACGGGGATTTACACACAGGCTCCGT CATGGTGATGGAGGGGTCCACTGTTGTTATCGATCCCGAGTTTGCGTTCT ACGGCCCAATGGGCTTTGAATGCGGGGCTTTACTCGCCAATTTCTGGCTG AATTACTTTAGTCAGGAGGGGCGTGGAGAGAAGGAAGGAGGGAGGGCAGG TTATGCCGAGTGGGTGCTGGCACAGTCGATGGCGATATGGAACGGGTTTA TGCAGAAATTTTTGGCGCTATGGACGGACGAGGCCACTCATAAAGGCGAG CTATTCAAGCGCGGTGCGTACGCAAATCCGGGCGAATTGGAAGCGACGCA AGAAGCTTTCGTTCGAAACCTGTTGGTTGACACGTTGGGCTTTGCAGGGT GCAAGATGATCCGACGCATTATTGGCATTGCACATGTGGAAGACCTAGAG TCGATTGAGGATATGGACGTGCGCGCGACGTGCGAGAAGAAGGCGCTAAA GATGGCGAGGGAGATGGTGGTGAATGCGGCCAAGTACAGGAAAATCGAGG CAGTGGCAATCCTGGCTAAGCAACAGTAATATAGGAGATGGGAAAGAACG AAGGGTGGTCAGCTTGTATTTGTTTGCATATTCGACTTAACTAAGGGACG TTGGCGCCGAGATACGTGTGCAACGAATGAAACGAGCATTCAAAAGCGA back to topprotein sequence of NO02G05150.2 >NO02G05150.2-protein ID=NO02G05150.2-protein|Name=NO02G05150.2|organism=Nannochloropsis oceanica|type=polypeptide|length=604bp MTAANNLPSSFSSSSSSSATPALQSLIYTPRSAQTGPPSLQVLDQLHVPR SKAYVPIHTTQDAWKVIRDMNVRGAPLIAIVAILSLAVEMSAKEEGFASL DAASTWLAEAAEYLKTSRPTAVNLFTAMDEVVTLSQAVVEGERGKGASNS KAATPLVLAVVTFAERMLKEDVESNQAIGNHGAMAILSNTLPGKGVKIMT HCNTGSLATAGYGTALGVIRSLHKTGRLDRVFCTETRPYNQGARLTAFEL VQDRLPGTLVADSMASFLMASKGLDAVVVGADRIAANGDTANKIGTYQLA VAAKHHGVAFYVAAPFTSFDLTLSSGSQIVIEERPAQELTHVQSVQVAPE GIAVWNPGFDVTPAALITGIITERGVIYPSPVAGTAADADAGNERAKWGI TAFDVQGFLQGEGAHGFPSASAPISSSSSSTTTTIKAPKEYEPLNEGKLG PFLQAHVPHVWRMLGADTLSDVAVTEVGDGNLNFVFLVTGPKTTVVVKQA LPYVRCVGESWPLTLERAFYEEAALEEEGKRTPGLVPEVGREGEREGGRK VENEGLCLSLKLFTLRLVTYIPTLPIYHYSSFLSSLPPALSAPRSTTSAS AWP* back to topmRNA from alignment at chr2:1378059..1381139+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G05150.2 ID=NO02G05150.2|Name=NO02G05150.2|organism=Nannochloropsis oceanica|type=mRNA|length=3081bp|location=Sequence derived from alignment at chr2:1378059..1381139+ (Nannochloropsis oceanica) AGGTGCTGTTGGGCGACATTTTTTCAAGAACGTGCCGTTGCACCATGACG
GCCGCCAACAACCTCCCCTCTTCTTTTTCCTCCTCCTCCTCCTCCTCCGC
AACCCCGGCCCTCCAGTCCCTCATTTACACACCGCGTTCGGCGCAGACAG
GGCCACCCTCCTTGCAAGTCCTGGACCAGCTACATGTGCCCCGTAGTAAG
GCGTACGTTCCCATTCATACAACGCAAGACGCATGGAAGGTCATCCGGGA
TATGAATGTGCGAGGTGCGCCCTTGATTGCCATCGTCGCCATCTTGAGCC
TGGCCGTGGAGATGAGCGCAAAGGAGGAGGGTTTTGCCTCGCTGGATGCT
GCCAGTACGTGGCTTGCCGAGGCCGCAGAGTATCTGAAGACCTCAAGGCC
GACTGCTGTCAATCTCTTCACGGCCATGGACGAAGTGGTAACGCTGAGCC
AGGCAGTGGTGGAGGGGGAGAGGGGGAAAGGCGCCAGTAACAGCAAGGCC
GCCACACCCTTGGTGCTTGCTGTCGTGACATTTGCCGAGCGCATGCTCAA
GGAAGACGTCGAGTCAAACCAGGCTATTGGAAACCATGGGGCAATGGCTA
TTTTATCGAATACCTTGCCGGGGAAGGGGGTAAAAATCATGACACACTGC
AACACGGGCTCACTCGCTACAGCGGGGTACGGCACGGCATTAGGCGTCAT
TCGCTCACTGCACAAAACGGGACGACTTGATCGTGTCTTTTGCACAGAAA
CCCGTCCGTACAATCAAGGTGCGCGTTTGACGGCTTTCGAACTGGTCCAA
GACCGACTGCCTGGGACGTTGGTGGCCGACTCGATGGCCTCTTTCCTCAT
GGCTTCCAAGGGGCTGGATGCTGTGGTGGTGGGTGCTGACCGCATTGCCG
CCAATGGCGACACGGCAAACAAGATAGGGACGTACCAGTTGGCTGTGGCG
GCGAAGCACCACGGGGTGGCATTTTACGTGGCTGCTCCGTTCACCTCTTT
TGATTTGACCTTATCTTCAGGGAGTCAGATTGTGATTGAGGAGCGACCCG
CACAAGAGTTGACGCACGTTCAGAGTGTGCAAGTGGCTCCTGAGGGGATT
GCGGTGTGGAACCCGGGGTTTGACGTGACCCCTGCGGCATTGATCACGGG
AATCATTACTGAGAGGGGCGTGATATACCCCTCCCCTGTTGCTGGTACTG
CTGCTGATGCTGATGCAGGGAACGAGAGGGCTAAGTGGGGGATCACAGCT
TTCGATGTCCAGGGGTTCTTGCAAGGCGAAGGAGCACATGGCTTTCCTTC
CGCCTCCGCCCCCATTTCTTCGTCCTCCTCCTCCACCACCACCACCATAA
AGGCTCCCAAGGAATATGAGCCTCTGAATGAAGGCAAGCTTGGCCCCTTC
CTCCAAGCTCACGTTCCTCATGTCTGGCGTATGCTAGGAGCAGACACATT
AAGCGACGTGGCAGTCACCGAGGTAGGAGATGGGAATCTGAACTTCGTTT
TCTTGGTCACAGGGCCGAAGACAACGGTGGTGGTGAAGCAGGCCTTGCCT
TATGTGCGGTGTGTGGGGGAGTCCTGGCCATTGACCTTAGAGAGAGCTTT
TTATGAAGAGGCGGCGTTGGAGGAGGAAGGAAAGCGGACACCAGGGTTGG
TGCCGGAGGTAGGAAGGGAGGGAGAGAGGGAGGGAGGGAGGAAGGTAGAA
AATGAAGGACTTTGTCTCTCTCTTAAACTTTTTACTCTGCGATTGGTGAC
TTACATCCCCACGCTTCCAATATATCACTACTCGTCTTTCCTCTCCTCTC
TCCCGCCCGCCCTCTCTGCCCCCAGGTCTACTACTTCAGCAAGCGCTTGG
CCTTAATCATCATGCAGTACGTCCCTCCTCCCCACATCATCCTCCGCAAA
GCCCTCATTCGTGGGGATACTCTCTCCACCCTCGCCACGGACTTAAGGTC
GGTAGGCGTGGGTTGTGTGAGAGTGGATTGAATGCGTGGATTACGATATT
TCGTCCCTTTCATCCATACCTCTCTTTTGTCTGACCTCCAGTAGTTGGAT
AAGGCGTAAAGATGTATCACGAAACCTTTTGCTTTTCCTCTGACGTCCCT
CTCCTCTTCCTTTCTACCCTCCCCAATAGCGATTTCCTCGCGCTCAATCT
TTTCTATACCTCCTCTCTTCACCTTACGGGCCCCGCCAAACGCGCTGCTG
TCTCCTTTTGGTCGGGGAACCATGGGCTTTGCGCCCTGACTGAAGCCGTC
GTCTTCACAGAGCCCTATTGCAATGACGTCGTACACAACCGCTGGACAAG
CCCCGCGCTCGATGACATCGTCAGAGAGCTGCGAAATGATCTGCCCTTGA
AGCTGGCAGTCGGTAATTTGAAGGCCAAGTTCATGGACGCGACAGAAGCC
TTGTGCCACGGGGATTTACACACAGGCTCCGTCATGGTGATGGAGGGGTC
CACTGTTGTTATCGATCCCGAGTTTGCGTTCTACGGCCCAATGGGCTTTG
AATGCGGGGCTTTACTCGCCAATTTCTGGCTGAATTACTTTAGTCAGGAG
GGGCGTGGAGAGAAGGAAGGAGGGAGGGCAGGTTATGCCGAGTGGGTGCT
GGCACAGTCGATGGCGATATGGAACGGGTTTATGCAGAAATTTTTGGCGC
TATGGACGGACGAGGCCACTCATAAAGGCGAGCTATTCAAGCGCGGTGCG
TACGCAAATCCGGGCGAATTGGAAGCGACGCAAGAAGCTTTCGTTCGAAA
CCTGTTGGTTGACACGTTGGGCTTTGCAGGGTGCAAGATGATCCGACGCA
TTATTGGCATTGCACATGTGGAAGACCTAGAGTCGATTGAGGATATGGAC
GTGCGCGCGACGTGCGAGAAGAAGGCGCTAAAGATGGCGAGGGAGATGGT
GGTGAATGCGGCCAAGTACAGGAAAATCGAGGCAGTGGCAATCCTGGCTA
AGCAACAGTAATATAGGAGATGGGAAAGAACGAAGGGTGGTCAGCTTGTA
TTTGTTTGCATATTCGACTTAACTAAGGGACGTTGGCGCCGAGATACGTG
TGCAACGAATGAAACGAGCATTCAAAAGCGA back to topCoding sequence (CDS) from alignment at chr2:1378059..1381139+ >NO02G05150.2 ID=NO02G05150.2|Name=NO02G05150.2|organism=Nannochloropsis oceanica|type=CDS|length=1812bp|location=Sequence derived from alignment at chr2:1378059..1381139+ (Nannochloropsis oceanica) ATGACGGCCGCCAACAACCTCCCCTCTTCTTTTTCCTCCTCCTCCTCCTC CTCCGCAACCCCGGCCCTCCAGTCCCTCATTTACACACCGCGTTCGGCGC AGACAGGGCCACCCTCCTTGCAAGTCCTGGACCAGCTACATGTGCCCCGT AGTAAGGCGTACGTTCCCATTCATACAACGCAAGACGCATGGAAGGTCAT CCGGGATATGAATGTGCGAGGTGCGCCCTTGATTGCCATCGTCGCCATCT TGAGCCTGGCCGTGGAGATGAGCGCAAAGGAGGAGGGTTTTGCCTCGCTG GATGCTGCCAGTACGTGGCTTGCCGAGGCCGCAGAGTATCTGAAGACCTC AAGGCCGACTGCTGTCAATCTCTTCACGGCCATGGACGAAGTGGTAACGC TGAGCCAGGCAGTGGTGGAGGGGGAGAGGGGGAAAGGCGCCAGTAACAGC AAGGCCGCCACACCCTTGGTGCTTGCTGTCGTGACATTTGCCGAGCGCAT GCTCAAGGAAGACGTCGAGTCAAACCAGGCTATTGGAAACCATGGGGCAA TGGCTATTTTATCGAATACCTTGCCGGGGAAGGGGGTAAAAATCATGACA CACTGCAACACGGGCTCACTCGCTACAGCGGGGTACGGCACGGCATTAGG CGTCATTCGCTCACTGCACAAAACGGGACGACTTGATCGTGTCTTTTGCA CAGAAACCCGTCCGTACAATCAAGGTGCGCGTTTGACGGCTTTCGAACTG GTCCAAGACCGACTGCCTGGGACGTTGGTGGCCGACTCGATGGCCTCTTT CCTCATGGCTTCCAAGGGGCTGGATGCTGTGGTGGTGGGTGCTGACCGCA TTGCCGCCAATGGCGACACGGCAAACAAGATAGGGACGTACCAGTTGGCT GTGGCGGCGAAGCACCACGGGGTGGCATTTTACGTGGCTGCTCCGTTCAC CTCTTTTGATTTGACCTTATCTTCAGGGAGTCAGATTGTGATTGAGGAGC GACCCGCACAAGAGTTGACGCACGTTCAGAGTGTGCAAGTGGCTCCTGAG GGGATTGCGGTGTGGAACCCGGGGTTTGACGTGACCCCTGCGGCATTGAT CACGGGAATCATTACTGAGAGGGGCGTGATATACCCCTCCCCTGTTGCTG GTACTGCTGCTGATGCTGATGCAGGGAACGAGAGGGCTAAGTGGGGGATC ACAGCTTTCGATGTCCAGGGGTTCTTGCAAGGCGAAGGAGCACATGGCTT TCCTTCCGCCTCCGCCCCCATTTCTTCGTCCTCCTCCTCCACCACCACCA CCATAAAGGCTCCCAAGGAATATGAGCCTCTGAATGAAGGCAAGCTTGGC CCCTTCCTCCAAGCTCACGTTCCTCATGTCTGGCGTATGCTAGGAGCAGA CACATTAAGCGACGTGGCAGTCACCGAGGTAGGAGATGGGAATCTGAACT TCGTTTTCTTGGTCACAGGGCCGAAGACAACGGTGGTGGTGAAGCAGGCC TTGCCTTATGTGCGGTGTGTGGGGGAGTCCTGGCCATTGACCTTAGAGAG AGCTTTTTATGAAGAGGCGGCGTTGGAGGAGGAAGGAAAGCGGACACCAG GGTTGGTGCCGGAGGTAGGAAGGGAGGGAGAGAGGGAGGGAGGGAGGAAG GTAGAAAATGAAGGACTTTGTCTCTCTCTTAAACTTTTTACTCTGCGATT GGTGACTTACATCCCCACGCTTCCAATATATCACTACTCGTCTTTCCTCT CCTCTCTCCCGCCCGCCCTCTCTGCCCCCAGGTCTACTACTTCAGCAAGC GCTTGGCCTTAA back to top
|