NO02G05110.1, NO02G05110.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G05110.1
Unique Name	NO02G05110.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2999
Alignment location	chr2:1368435..1372010 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:1368435..1372010 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO02G05110.1 vs.
Match: EWM30175.1 (hypothetical protein Naga_100096g18 [Nannochloropsis gaditana])

HSP 1 Score: 235.3 bits (599), Expect = 1.800e-58
Identity = 142/262 (54.20%), Postives = 166/262 (63.36%), Query Frame = 0

Query:    6 MEQ-DERVLFELADVEMSYGGSAMAPEGRGLLQVTSKCLLWKQQQQEE---------GVEGKVYKVDAPCITLHAISKDPSSFPKPCLYCQVSEGGEDEDEDEAKEIYFVPQDPESLSPLFEALSKAALMNPDPPEAEENEGDDDLIFDQ-----------------SAFAAAGGASE-----------------EQARVLSHLEGLMTFSPNLGAAAGGQFDDVEEEEEEGTAAAAAATDGESERGGAGEEEEGAGGMNGH 224
            MEQ DE +LFEL DVEMSYG S    E RGLLQ+TSK L WK +++E+          +  ++Y+ + PCITLHAISKDPSSFPKPCLYCQ+SEGGEDEDED +KE+YFVP+DPESL PLFEALS+AALMNPDPPEA ENEGDD+LIFDQ                        G S                   Q R+L+HLEGL+TFSPNL  AA GQFDDV+E E      AA+    + + GG GE     GGMNGH
Sbjct:    1 MEQGDEELLFELVDVEMSYGSSTGPSERRGLLQITSKRLRWKARREEDEGTNLTADTDLGEELYEAEIPCITLHAISKDPSSFPKPCLYCQISEGGEDEDEDASKEVYFVPEDPESLGPLFEALSRAALMNPDPPEAGENEGDDELIFDQTSTDGASGASEEQYEAIKEMCRLCGFSHGQHRCIDLSSTVRLWVYAQGRMLAHLEGLLTFSPNL-VAASGQFDDVDEAE-----GAASGGGDQGQDGGRGE-----GGMNGH 251

The following BLAST results are available for this feature:

BLAST of NO02G05110.1 vs.

BLAST of NO02G05110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM30175.1	1.800e-58	54.20	hypothetical protein Naga_100096g18 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G05110	NO02G05110	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G05110.1	NO02G05110.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G05110.1.cds1	NO02G05110.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G05110.1.cds2	NO02G05110.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G05110.1.cds3	NO02G05110.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G05110.1.cds4	NO02G05110.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G05110.1.cds5	NO02G05110.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:1368435..1372010-
coding sequence from alignment at chr2:1368435..1372010-

mRNA sequence

>NO02G05110.1 ID=NO02G05110.1|Name=NO02G05110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2999bp
CCCTTTCTCGCCCTCCCCCCTCCCTCACCCTCCTTCATCTCAATACGCTA
CTCCCCCCCTCCGCCACCACCTTGCTCTTCCCCAAAAACGCACCGAGCTT
CGTCACCAGCGTAGGAGGCCACCTCCGTATCCGTTGAACAAAATCCAAAT
CTCTATAAGCCGCACACCCCGTACTCGTGTTCTCACATGCAAACCTCCAT
TCCTTTTCCGCCAACCCAAGCTTCCCCTCCCCCCACGCATGGGCTGCCAA
CGCCACGTGCATATCCGTGAAGCCGGGCTGTCGCCTGATCACGTCATTCA
TTAACTTTAATGCAGATTCCTCATACCCCAGTTCATAGTACGTCAACGCC
GCGTTCGCCCGGGCCAGCAACGCATCCTCCTCATCTCTCGACGCCAGAAA
TAAATCCGCAGACGCCTCGAAGTCCTGCAAGGCATCTTTGTACTTCCCCA
GCCTCGTCAATACATTCCCACGAAAAGTGAGCACAAAGGGATTGATTCCC
TCTCCTCGCCCCCCGCCCCAGAGAGAGATGGCTTGGCTGTAGTCCTCAAC
GGCGGCTTGCCACTCGCTCAGTCCCTCCTGTCAGTCGTAGCATGGGCCAG
AATGAAGGAGGAGAGAAGGGGTGAATGATCGCTCCAAATGTAGGGAAATA
GACAGTCTCATGAAGAAATGCGATCCTTGCCATCCATCCTTCTCTCTCGA
CCATCATGTTTCCCTTCCTCTCCTACCCCCATTGACGTACCCTCGCCAAG
CCCCGCTGCACGAACAGATCTGGATACTCTGAATAAGCCGCTTCCCCACT
TCCGTCCGTCTTGGTCCCGTCCACGCTCATGATCGTCAAAACCCTGTCAA
AATCAACTATGGCCGCATCAAATTTCTTGAGGTCCACTTTAACGTTCCCA
CGGGCTTTGATCAACGCTGCCATCTCGTCTCTGGGCCGTTCCAATTTCTC
CCAAACAGCCACCGACTTATCGAACAAAGATTCGGCCAGGCGTAAGTCTC
GGTCATTGAACGCTTGAAAGGCACGTTGAACTTGCTGGATCTGCGCGGGG
GACGGTTCGGCAGCCGAGGCCTGGAGGGGGGAGGTGAGGAGGGGTCCAAA
AGCGCCGCTGCAGCCACCAAGAAAGAGGAGGCTGATCTTAAAGGCAGCTT
TATGAAGTGAGGTGGACAAGAGAAAGGACAAGGGACTGGAAGTCAGTTGG
GGATGGAGCGGGTGCCAGGTACTTGAGCTGGTAGAGGCGTGCGTGGCGGC
ATAGGTCGCAGTCGGAAGGGGCGTCCGGCCGCGGGAGGAAGCACCCGCAC
ACGCGCGCGGAGCAAAGCAGATCGAAGGCTGGGGGAGGGACGTGACTAAC
CCTAGTATTAGGCATGTCCAGGACAAATTGTACCGCCGTGGCTGTGTCGG
TGATGGCATCTTACTGTGTTGAAGACGAGAGAGAGGGGAGGAGAGGCGGT
GAAGTGATGAATCAATCGCGATGGAAGCTGCCATCTTTGCCGCTTCTTGG
TGCTGCTATTCATAGTGGGCACCATAAAGGCGCGAGTAGCTGTATTACTA
GGAGCGGATTGGAAAGAATTGTGTTTTACAGGCGTCATGTCCTGCGTCAG
GCCAATCACGAACGACGAACGCAACAAAACGTCCGATGAGTGTCTCGCGC
GACCCCATTGAGCATAGCAGAGTCTGGCATCATTTTCCATACGGTGTGCC
ATAAGAAATCTGCAACTTTTTCGTCACAAAATTGGATGCGCTGTAGCAAT
TTTTCCCTGAAGACGTAGGCGCAATTTGGTCCTCGTTCGTCCCAGGAATG
CAATGCCTTGAAGGATGTTAGACACGCCACCCGCTTCCTTTCCCTTTGTG
TGGGCTACATTTTGTCCACTGTCAAAACTCAGAGATGTTGTATTATGTTT
CTTCGAATCATGCTTGTGTGCTTTATTAGTAAACGGCTAACTGACCATTT
GGGTCATGCGAGGACGCAAAGCATGGTTGTGTTTCTTGAATGGTTCGCGA
TGGGTGCGATGGGCCTGACCTCCTCTCCCCCCTCTTCTTTCTTCCCCTCC
AAGCGGACGATGCACACTCTTGTGATTCGCCTCGGCCCTTTAACCTCATG
CTGCCCACTGCACTCACATATGCACAGGCACCAAGTTTTCAACACCGACG
CAACGAATGGCGGCTTCAATCATGGAGCAGGACGAGCGAGTCTTGTTCGA
GCTGGCCGACGTAGAAATGTCGTATGGGGGCAGTGCCATGGCACCGGAAG
GCCGGGGCCTGTTGCAAGTAACGTCAAAATGCCTTCTATGGAAGCAGCAG
CAGCAAGAGGAAGGGGTCGAGGGCAAGGTTTACAAGGTAGATGCCCCTTG
CATCACCCTCCATGCTATTTCCAAAGATCCTTCATCTTTTCCGAAGCCAT
GTTTGTACTGCCAGGTCTCAGAAGGTGGGGAAGATGAGGACGAGGACGAG
GCCAAAGAGATCTACTTCGTGCCGCAGGACCCAGAGAGTCTGAGTCCTCT
CTTCGAGGCGCTTTCCAAGGCAGCTTTAATGAACCCTGACCCTCCAGAGG
CCGAAGAAAATGAGGGCGACGATGATTTAATTTTTGACCAGAGCGCCTTT
GCTGCCGCGGGGGGCGCGTCGGAAGAACAGGCCCGTGTGCTGTCTCACCT
CGAGGGACTCATGACCTTTAGCCCCAATTTGGGCGCGGCGGCAGGCGGGC
AATTCGACGACGTCGAAGAGGAGGAAGAAGAAGGTACCGCGGCAGCAGCG
GCGGCTACGGATGGTGAAAGCGAGAGAGGAGGAGCAGGAGAAGAGGAAGA
GGGAGCGGGAGGGATGAATGGGCATAACGGCATAGCTCAGTAGAGACTGG
TAGAGTTACGTCACGAATCAAAAAAAGGCATTTACTAATTTGAGGGCTTA
TGCAACTTGCCTTCCTCTATTCTTCCGTGTGCGCGTGGGCCCTATTACCC
AGCACTGTCTCGCCTTGTCCTATTAGAACCAATTATCCAGTCCCTTCGT

protein sequence of NO02G05110.1

>NO02G05110.1-protein ID=NO02G05110.1-protein|Name=NO02G05110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MAASIMEQDERVLFELADVEMSYGGSAMAPEGRGLLQVTSKCLLWKQQQQ
EEGVEGKVYKVDAPCITLHAISKDPSSFPKPCLYCQVSEGGEDEDEDEAK
EIYFVPQDPESLSPLFEALSKAALMNPDPPEAEENEGDDDLIFDQSAFAA
AGGASEEQARVLSHLEGLMTFSPNLGAAAGGQFDDVEEEEEEGTAAAAAA
TDGESERGGAGEEEEGAGGMNGHNGIAQ*

mRNA from alignment at chr2:1368435..1372010-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G05110.1 ID=NO02G05110.1|Name=NO02G05110.1|organism=Nannochloropsis oceanica|type=mRNA|length=3576bp|location=Sequence derived from alignment at chr2:1368435..1372010- (Nannochloropsis oceanica)
CCCTTTCTCGCCCTCCCCCCTCCCTCACCCTCCTTCATCTCAATACGCTA
CTCCCCCCCTCCGCCACCACCTTGCTCTTCCCCAAAAACGCACCGAGCTT
CGTCACCAGCGTAGGAGGCCACCTCCGTATCCGTTGAACAAAATCCAAAT
CTCTATAAGCCGCACACCCCGTACTCGTGTTCTCACATGCAAACCTCCAT
TCCTTTTCCGCCAACCCAAGCTTCCCCTCCCCCCACGCATGGGCTGCCAA
CGCCACGTGCATATCCGTGAAGCCGGGCTGTCGCCTGATCACGTCATTCA
TTAACTTTAATGCAGATTCCTCATACCCCAGTTCATAGTACGTCAACGCC
GCGTTCGCCCGGGCCAGCAACGCATCCTCCTCATCTCTCGACGCCAGAAA
TAAATCCGCAGACGCCTCGAAGTCCTGCAAGGCATCTTTGTACTTCCCCA
GCCTCGTCAATACATTCCCACGAAAAGTGAGCACAAAGGGATTGATTCCC
TCTCCTCGCCCCCCGCCCCAGAGAGAGATGGCTTGGCTGTAGTCCTCAAC
GGCGGCTTGCCACTCGCTCAGTCCCTCCTGTCAGTCGTAGCATGGGCCAG
AATGAAGGAGGAGAGAAGGGGTGAATGATCGCTCCAAATGTAGGGAAATA
GACAGTCTCATGAAGAAATGCGATCCTTGCCATCCATCCTTCTCTCTCGA
CCATCATGTTTCCCTTCCTCTCCTACCCCCATTGACGTACCCTCGCCAAG
CCCCGCTGCACGAACAGATCTGGATACTCTGAATAAGCCGCTTCCCCACT
TCCGTCCGTCTTGGTCCCGTCCACGCTCATGATCGTCAAAACCCTGTCAA
AATCAACTATGGCCGCATCAAATTTCTTGAGGTCCACTTTAACGTTCCCA
CGGGCTTTGATCAACGCTGCCATCTCGTCTCTGGGCCGTTCCAATTTCTC
CCAAACAGCCACCGACTTATCGAACAAAGATTCGGCCAGGCGTAAGTCTC
GGTCATTGAACGCTTGAAAGGCACGTTGAACTTGCTGGATCTGCGCGGGG
GACGGTTCGGCAGCCGAGGCCTGGAGGGGGGAGGTGAGGAGGGGTCCAAA
AGCGCCGCTGCAGCCACCAAGAAAGAGGAGGCTGATCTTAAAGGCAGCTT
TATGAAGTGAGGTGGACAAGAGAAAGGACAAGGGACTGGAAGTCAGTTGG
GGATGGAGCGGGTGCCAGGTACTTGAGCTGGTAGAGGCGTGCGTGGCGGC
ATAGGTCGCAGTCGGAAGGGGCGTCCGGCCGCGGGAGGAAGCACCCGCAC
ACGCGCGCGGAGCAAAGCAGATCGAAGGCTGGGGGAGGGACGTGACTAAC
CCTAGTATTAGGCATGTCCAGGACAAATTGTACCGCCGTGGCTGTGTCGG
TGATGGCATCTTACTGTGTTGAAGACGAGAGAGAGGGGAGGAGAGGCGGT
GAAGTGATGAATCAATCGCGATGGAAGCTGCCATCTTTGCCGCTTCTTGG
TGCTGCTATTCATAGTGGGCACCATAAAGGCGCGAGTAGCTGTATTACTA
GGAGCGGATTGGAAAGAATTGTGTTTTACAGGCGTCATGTCCTGCGTCAG
GCCAATCACGAACGACGAACGCAACAAAACGTCCGATGAGTGTCTCGCGC
GACCCCATTGAGCATAGCAGAGTCTGGCATCATTTTCCATACGGTGTGCC
ATAAGAAATCTGCAACTTTTTCGTCACAAAATTGGATGCGCTGTAGCAAT
TTTTCCCTGAAGACGTAGGCGCAATTTGGTCCTCGTTCGTCCCAGGAATG
CAATGCCTTGAAGGATGTTAGACACGCCACCCGCTTCCTTTCCCTTTGTG
TGGGCTACATTTTGTCCACTGTCAAAACTCAGAGATGTTGTATTATGTTT
CTTCGAATCATGCTTGTGTGCTTTATTAGTAAACGGCTAACTGACCATTT
GGGTCATGCGAGGACGCAAAGCATGGTTGTGTTTCTTGAATGGTTCGCGA
TGGGTGCGATGGGCCTGACCTCCTCTCCCCCCTCTTCTTTCTTCCCCTCC
AAGCGGACGATGCACACTCTTGTGATTCGCCTCGGCCCTTTAACCTCATG
CTGCCCACTGCACTCACATATGCACAGGCACCAAGTTTTCAACACCGACG
CAACGAATGGCGGCTTCAATCATGGAGCAGGTAAGCAGTACAAGTCCCTG
AGTAGCGAATCATATCTAACCCTCTCACGCCTCAACTCCTTCATACCACC
GCTCTCCCGTAGGACGAGCGAGTCTTGTTCGAGCTGGCCGACGTAGAAAT
GTCGTATGGGGGCAGTGCCATGGCACCGGAAGGCCGGGGCCTGTTGCAAG
TAACGTCAAAATGCCTTCTATGGAAGCAGCAGCAGCAAGAGGAAGGGGTC
GAGGGCAAGGTTTACAAGGTAGATGCCCCTTGCATCACCCTCCATGCTAT
TTCCAAAGATCCTTCATCTTTTCCGAAGCCATGTTTGTACTGCCAGGTAT
GCGATGGATGGACGGGCTGAGAGGTCGAAGCGGGAAGGGAAGATGGGTAC
CTTTCTCAAGGAGAAGACCTCGATAATATCCTTCCTTATCCAGAATGCCT
TCCCGCCTTTTTATCACCACTGCAGGTCTCAGAAGGTGGGGAAGATGAGG
ACGAGGACGAGGCCAAAGAGATCTACTTCGTGCCGCAGGACCCAGAGAGT
CGTAAGTGTTTGCTCATGCGTGCCCTGGTTAGATGGTATGCGATAATTGC
AGAACCCATTCAACCCTATCCTCCCGTTTTCGAAGAGATGTTCCATTAAA
TATATGGACTTTCATATAGTGTCTGCAGCATTCATATCCTGGTCTCGCCG
CATCCGTCATCTCGTGCATATTTACTCACATCTTGCAATTTCCTCCCCTT
CATTCAGTGAGTCCTCTCTTCGAGGCGCTTTCCAAGGCAGCTTTAATGAA
CCCTGACCCTCCAGAGGCCGAAGAAAATGAGGGCGACGATGATTTAATTT
TTGACCAGAGCGCCTTTGCTGCCGCGGGGGGCGCGTCGGAAGAACAGGTA
GGAGGAGATGGATGGTTGCTTGTCAGTGACGGTCGATGAAGCTCTCAATT
TGTTGACGTGTGTGTAACAAAAGATGATGTAGGCTACGACTGCGTGATGA
CATTCAACTGGCTTACAAATGATTCTCATTCTAACACTTCCAATAACCAT
CTCATAGGCCCGTGTGCTGTCTCACCTCGAGGGACTCATGACCTTTAGCC
CCAATTTGGGCGCGGCGGCAGGCGGGCAATTCGACGACGTCGAAGAGGAG
GAAGAAGAAGGTACCGCGGCAGCAGCGGCGGCTACGGATGGTGAAAGCGA
GAGAGGAGGAGCAGGAGAAGAGGAAGAGGGAGCGGGAGGGATGAATGGGC
ATAACGGCATAGCTCAGTAGAGACTGGTAGAGTTACGTCACGAATCAAAA
AAAGGCATTTACTAATTTGAGGGCTTATGCAACTTGCCTTCCTCTATTCT
TCCGTGTGCGCGTGGGCCCTATTACCCAGCACTGTCTCGCCTTGTCCTAT
TAGAACCAATTATCCAGTCCCTTCGT

Coding sequence (CDS) from alignment at chr2:1368435..1372010-

>NO02G05110.1 ID=NO02G05110.1|Name=NO02G05110.1|organism=Nannochloropsis oceanica|type=CDS|length=687bp|location=Sequence derived from alignment at chr2:1368435..1372010- (Nannochloropsis oceanica)
ATGGCGGCTTCAATCATGGAGCAGGACGAGCGAGTCTTGTTCGAGCTGGC
CGACGTAGAAATGTCGTATGGGGGCAGTGCCATGGCACCGGAAGGCCGGG
GCCTGTTGCAAGTAACGTCAAAATGCCTTCTATGGAAGCAGCAGCAGCAA
GAGGAAGGGGTCGAGGGCAAGGTTTACAAGGTAGATGCCCCTTGCATCAC
CCTCCATGCTATTTCCAAAGATCCTTCATCTTTTCCGAAGCCATGTTTGT
ACTGCCAGGTCTCAGAAGGTGGGGAAGATGAGGACGAGGACGAGGCCAAA
GAGATCTACTTCGTGCCGCAGGACCCAGAGAGTCTGAGTCCTCTCTTCGA
GGCGCTTTCCAAGGCAGCTTTAATGAACCCTGACCCTCCAGAGGCCGAAG
AAAATGAGGGCGACGATGATTTAATTTTTGACCAGAGCGCCTTTGCTGCC
GCGGGGGGCGCGTCGGAAGAACAGGCCCGTGTGCTGTCTCACCTCGAGGG
ACTCATGACCTTTAGCCCCAATTTGGGCGCGGCGGCAGGCGGGCAATTCG
ACGACGTCGAAGAGGAGGAAGAAGAAGGTACCGCGGCAGCAGCGGCGGCT
ACGGATGGTGAAAGCGAGAGAGGAGGAGCAGGAGAAGAGGAAGAGGGAGC
GGGAGGGATGAATGGGCATAACGGCATAGCTCAGTAG

Synonyms

Publications