NO02G05100.1, NO02G05100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05100.1
Unique NameNO02G05100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length276
Alignment locationchr2:1364941..1365292 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1364941..1365292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05100.1 vs.
Match: EWM30171.1 (EKC/KEOPS complex, subunit Pcc1 [Nannochloropsis gaditana])

HSP 1 Score: 129.8 bits (325), Expect = 4.300e-27
Identity = 63/91 (69.23%), Postives = 79/91 (86.81%), Query Frame = 0 
Query:    1 MASLEDPEATRHHCHIDLHFPTPAKAQLVKNVLEIDDELQPTKIRKTFAVDGTALDVLLVSCDPKVLRVAVSSFYDMLTVALKTLQEFDEK 92
            MASL+DP+AT HHC I LH  + +KAQL+++VLE+D+ELQP K+ K+FAV+G+AL+V LVSCD KVLRVAVSSFYDMLTVALKTL +FD +
Sbjct:   51 MASLKDPKATLHHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQFDNE 141
The following BLAST results are available for this feature:
BLAST of NO02G05100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30171.14.300e-2769.23EKC/KEOPS complex, subunit Pcc1 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05100NO02G05100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05100.1NO02G05100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05100.1.cds1NO02G05100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05100.1.cds2NO02G05100.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05100.1 ID=NO02G05100.1|Name=NO02G05100.1|organism=Nannochloropsis oceanica|type=mRNA|length=276bp
ATGGCGTCGTTGGAGGACCCCGAGGCGACGCGCCACCACTGCCATATAGA
CCTCCACTTCCCTACGCCTGCGAAGGCCCAACTGGTCAAAAACGTGTTGG
AGATAGACGATGAATTGCAGCCGACCAAGATTCGGAAGACTTTTGCCGTG
GACGGAACGGCGCTAGACGTGCTGCTAGTGTCGTGTGACCCCAAAGTCTT
GCGGGTGGCCGTATCTTCGTTCTACGACATGCTCACAGTGGCGCTCAAGA
CGCTACAGGAATTTGACGAAAAATAA
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protein sequence of NO02G05100.1

>NO02G05100.1-protein ID=NO02G05100.1-protein|Name=NO02G05100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=92bp
MASLEDPEATRHHCHIDLHFPTPAKAQLVKNVLEIDDELQPTKIRKTFAV
DGTALDVLLVSCDPKVLRVAVSSFYDMLTVALKTLQEFDEK*
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mRNA from alignment at chr2:1364941..1365292+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05100.1 ID=NO02G05100.1|Name=NO02G05100.1|organism=Nannochloropsis oceanica|type=mRNA|length=352bp|location=Sequence derived from alignment at chr2:1364941..1365292+ (Nannochloropsis oceanica)
ATGGCGTCGTTGGAGGACCCCGAGGCGACGCGCCACCACTGGTAAGTACC
CGACGAAAGCGTCCTACACTCCATACTCCTTCAACCCCTCCCTCCCTCCC
TCCCCTCCCCACCATAGCCATATAGACCTCCACTTCCCTACGCCTGCGAA
GGCCCAACTGGTCAAAAACGTGTTGGAGATAGACGATGAATTGCAGCCGA
CCAAGATTCGGAAGACTTTTGCCGTGGACGGAACGGCGCTAGACGTGCTG
CTAGTGTCGTGTGACCCCAAAGTCTTGCGGGTGGCCGTATCTTCGTTCTA
CGACATGCTCACAGTGGCGCTCAAGACGCTACAGGAATTTGACGAAAAAT
AA
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Coding sequence (CDS) from alignment at chr2:1364941..1365292+

>NO02G05100.1 ID=NO02G05100.1|Name=NO02G05100.1|organism=Nannochloropsis oceanica|type=CDS|length=276bp|location=Sequence derived from alignment at chr2:1364941..1365292+ (Nannochloropsis oceanica)
ATGGCGTCGTTGGAGGACCCCGAGGCGACGCGCCACCACTGCCATATAGA
CCTCCACTTCCCTACGCCTGCGAAGGCCCAACTGGTCAAAAACGTGTTGG
AGATAGACGATGAATTGCAGCCGACCAAGATTCGGAAGACTTTTGCCGTG
GACGGAACGGCGCTAGACGTGCTGCTAGTGTCGTGTGACCCCAAAGTCTT
GCGGGTGGCCGTATCTTCGTTCTACGACATGCTCACAGTGGCGCTCAAGA
CGCTACAGGAATTTGACGAAAAATAA
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Synonyms
Publications