NO02G04980.1, NO02G04980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04980.1
Unique NameNO02G04980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1908
Alignment locationchr2:1337204..1339111 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1337204..1339111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO02G04980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04980NO02G04980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04980.1NO02G04980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04980.1.cds1NO02G04980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04980.1 ID=NO02G04980.1|Name=NO02G04980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1908bp
ATGGCCCTGTTGCCATCCCTTGCGAGCATATACTCGGCCATGGCTTTAGG
CTGGCAGAGTTACAAGGTTCTGGCTGAGGAGAGCGTCGAAGAAGAGGAAG
AGAACGACATGGACATAGACGCTAGGCCCCCCTCCTATTCCCCCTGCTTC
GCCCCCTCCCCTTCTGCCCTTAGTCCCGACTTGCTGGCGGCTTGGACGGT
GCTGGGTGCTGTGCAGCTCTTCGAATGCACCCTGGAGTGGCTTGTGTCAT
GGCTGCCGTTCCACAATGTGGTCAAGGCAGCGTTCCTCATCGCCCTTACG
TTTCCCGAAACCCGCCTCCCGCACCTAGCGCTCACACGCGTGGTAGCGCC
CTACTCCGACGCTTTAAACGCTTTCTTTCAGACACACCTTCTTCCTGAAC
TGGTGCAGCTGGTCTTGGCATTGCCGCAACATTTTTTGGACGCCGTATTT
CCTATGTCCCATGACCATCCATCCTTTGCCGGGCCCCCTTTTTTGGAAAG
CCCTCGGCATCAACGACAGCAATATTATGCCCGGCGTCGTCGATCTTCCC
TCCTTTCCTTGTCAAAAGCAGGCGTAATCACATTCTCTCATGTGCAGGCT
ACCCCAACCCGTCGCTCTGCTTTTGAAAGGATCCTAGACACCTCTCCACC
ACCATCGTCCCCTCCTCGCGTGGTACCCCCGACGAACGTGACGCTTTATC
CTCCCTCTACGCCCGCTTTACCTTCTGCGTCCTGTGATATTTATCGATCA
TCGCCACGAGCATCACGGCAAAGGCCAGTTTCACCGCCCAAGCCCAATTA
CCCCCACCAAAGGCAAAAAGTGATGCGGCCGCACGAGCAACAGCAGCAGC
AGCAGCAGCAGCCACAACAACAGCCATCGCAACGGCAGCAGCAGCATCAA
GATAAACCACGAAATCCCTCCCCACCCCCCCCTCCCAAGCCGCAGCACAA
ACGCCCTGTCTCACCACCCTTCCATCTCTCCCCTCCTCTCCCATCATTGT
CAAAAGTAGCAACATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAACAGCAGCAACAGCAACAGCCAAACCTGAGCACTTTTCGTC
GTCAAATGTTAGTGTCCGACATCGTCACCTCTCTGGATTGACTGCGATTG
CCTCCTCCCCTTCATCCCTTCCTCCCTCCTCGTCTTCCCCTTGTGGACAG
AGATCCATCTCCATGCCTCGTGCGGATTCAGGCGAGGAGAAAGTAAACAG
CAGCAGCAGCAGTAGTAATAGTAGTAGTAGTAGTAGTAGTAGCAGCAGCA
GCAGGAGCAGCAGCAGCAGTGGTAGTAGCAGTAGTGGCAGTAGTAGCAAC
AGTAGACGCAGACGCCCTTCTTCTCTCCCTCTTCTTTCTTCTGGCTTGAC
AAGAGCAGGAGCAGCTGTTGCCCCTTTCTCCCGATCAAGACCCTCCTCTA
CCCCACGCACGGATTTACGCAAAGAGAGCACTCGCACCAGCAGCAGCAGC
ACCACCACCCATCCCTCTTCCCTCCCACATTCCTTCAGTAAGATGGGAGA
CGAGGAGGGAGGAGAAAGAGGACGAGGAGGAGGAGGACGAGGAGGAAGGG
GCAGGGGGGGTAACTCGCGGTGGGCAGAGAAAATGCAAGTATCCAGCGAG
GAAAGTCGGGCACCCTCTCCTCGTGTGTCAAGACTAGCCCCATCGGGAGG
AGAGAGGATGAAGTGTAGGTGGGAAGAACGATGAAGGCCGGGCTTCAGCA
GCAGTAGCAGTAGCAGCAGTAGCAGCAGCGATAAGAGCCAATGGACGAAA
CGCCGAAGACGAGCCTGTGAGGAGTTTCCTCTGTTTCACACTTCCTCAGC
ACGTACGGCCTAATCCTCGGGCTTCCTCTTTTATCTCCTCCTCCTCCTCC
TCCTCCTC
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protein sequence of NO02G04980.1

>NO02G04980.1-protein ID=NO02G04980.1-protein|Name=NO02G04980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=578bp
MALLPSLASIYSAMALGWQSYKVLAEESVEEEEENDMDIDARPPSYSPCF
APSPSALSPDLLAAWTVLGAVQLFECTLEWLVSWLPFHNVVKAAFLIALT
FPETRLPHLALTRVVAPYSDALNAFFQTHLLPELVQLVLALPQHFLDAVF
PMSHDHPSFAGPPFLESPRHQRQQYYARRRRSSLLSLSKAGVITFSHVQA
TPTRRSAFERILDTSPPPSSPPRVVPPTNVTLYPPSTPALPSASCDIYRS
SPRASRQRPVSPPKPNYPHQRQKVMRPHEQQQQQQQQPQQQPSQRQQQHQ
DKPRNPSPPPPPKPQHKRPVSPPFHLSPPLPSLSKVATSAAAAAAAAAAA
AAATAATATAKPEHFSSSNVSVRHRHLSGLTAIASSPSSLPPSSSSPCGQ
RSISMPRADSGEEKVNSSSSSSNSSSSSSSSSSSRSSSSSGSSSSGSSSN
SRRRRPSSLPLLSSGLTRAGAAVAPFSRSRPSSTPRTDLRKESTRTSSSS
TTTHPSSLPHSFSKMGDEEGGERGRGGGGRGGRGRGGNSRWAEKMQVSSE
ESRAPSPRVSRLAPSGGERMKCRWEER*
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mRNA from alignment at chr2:1337204..1339111+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04980.1 ID=NO02G04980.1|Name=NO02G04980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1908bp|location=Sequence derived from alignment at chr2:1337204..1339111+ (Nannochloropsis oceanica)
ATGGCCCTGTTGCCATCCCTTGCGAGCATATACTCGGCCATGGCTTTAGG CTGGCAGAGTTACAAGGTTCTGGCTGAGGAGAGCGTCGAAGAAGAGGAAG AGAACGACATGGACATAGACGCTAGGCCCCCCTCCTATTCCCCCTGCTTC GCCCCCTCCCCTTCTGCCCTTAGTCCCGACTTGCTGGCGGCTTGGACGGT GCTGGGTGCTGTGCAGCTCTTCGAATGCACCCTGGAGTGGCTTGTGTCAT GGCTGCCGTTCCACAATGTGGTCAAGGCAGCGTTCCTCATCGCCCTTACG TTTCCCGAAACCCGCCTCCCGCACCTAGCGCTCACACGCGTGGTAGCGCC CTACTCCGACGCTTTAAACGCTTTCTTTCAGACACACCTTCTTCCTGAAC TGGTGCAGCTGGTCTTGGCATTGCCGCAACATTTTTTGGACGCCGTATTT CCTATGTCCCATGACCATCCATCCTTTGCCGGGCCCCCTTTTTTGGAAAG CCCTCGGCATCAACGACAGCAATATTATGCCCGGCGTCGTCGATCTTCCC TCCTTTCCTTGTCAAAAGCAGGCGTAATCACATTCTCTCATGTGCAGGCT ACCCCAACCCGTCGCTCTGCTTTTGAAAGGATCCTAGACACCTCTCCACC ACCATCGTCCCCTCCTCGCGTGGTACCCCCGACGAACGTGACGCTTTATC CTCCCTCTACGCCCGCTTTACCTTCTGCGTCCTGTGATATTTATCGATCA TCGCCACGAGCATCACGGCAAAGGCCAGTTTCACCGCCCAAGCCCAATTA CCCCCACCAAAGGCAAAAAGTGATGCGGCCGCACGAGCAACAGCAGCAGC AGCAGCAGCAGCCACAACAACAGCCATCGCAACGGCAGCAGCAGCATCAA GATAAACCACGAAATCCCTCCCCACCCCCCCCTCCCAAGCCGCAGCACAA ACGCCCTGTCTCACCACCCTTCCATCTCTCCCCTCCTCTCCCATCATTGT CAAAAGTAGCAACATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA GCAGCAGCAACAGCAGCAACAGCAACAGCCAAACCTGAGCACTTTTCGTC GTCAAATGTTAGTGTCCGACATCGTCACCTCTCTGGATTGACTGCGATTG CCTCCTCCCCTTCATCCCTTCCTCCCTCCTCGTCTTCCCCTTGTGGACAG AGATCCATCTCCATGCCTCGTGCGGATTCAGGCGAGGAGAAAGTAAACAG CAGCAGCAGCAGTAGTAATAGTAGTAGTAGTAGTAGTAGTAGCAGCAGCA GCAGGAGCAGCAGCAGCAGTGGTAGTAGCAGTAGTGGCAGTAGTAGCAAC AGTAGACGCAGACGCCCTTCTTCTCTCCCTCTTCTTTCTTCTGGCTTGAC AAGAGCAGGAGCAGCTGTTGCCCCTTTCTCCCGATCAAGACCCTCCTCTA CCCCACGCACGGATTTACGCAAAGAGAGCACTCGCACCAGCAGCAGCAGC ACCACCACCCATCCCTCTTCCCTCCCACATTCCTTCAGTAAGATGGGAGA CGAGGAGGGAGGAGAAAGAGGACGAGGAGGAGGAGGACGAGGAGGAAGGG GCAGGGGGGGTAACTCGCGGTGGGCAGAGAAAATGCAAGTATCCAGCGAG GAAAGTCGGGCACCCTCTCCTCGTGTGTCAAGACTAGCCCCATCGGGAGG AGAGAGGATGAAGTGTAGGTGGGAAGAACGATGAAGGCCGGGCTTCAGCA GCAGTAGCAGTAGCAGCAGTAGCAGCAGCGATAAGAGCCAATGGACGAAA CGCCGAAGACGAGCCTGTGAGGAGTTTCCTCTGTTTCACACTTCCTCAGC ACGTACGGCCTAATCCTCGGGCTTCCTCTTTTATCTCCTCCTCCTCCTCC TCCTCCTC
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Coding sequence (CDS) from alignment at chr2:1337204..1339111+

>NO02G04980.1 ID=NO02G04980.1|Name=NO02G04980.1|organism=Nannochloropsis oceanica|type=CDS|length=1734bp|location=Sequence derived from alignment at chr2:1337204..1339111+ (Nannochloropsis oceanica)
ATGGCCCTGTTGCCATCCCTTGCGAGCATATACTCGGCCATGGCTTTAGG
CTGGCAGAGTTACAAGGTTCTGGCTGAGGAGAGCGTCGAAGAAGAGGAAG
AGAACGACATGGACATAGACGCTAGGCCCCCCTCCTATTCCCCCTGCTTC
GCCCCCTCCCCTTCTGCCCTTAGTCCCGACTTGCTGGCGGCTTGGACGGT
GCTGGGTGCTGTGCAGCTCTTCGAATGCACCCTGGAGTGGCTTGTGTCAT
GGCTGCCGTTCCACAATGTGGTCAAGGCAGCGTTCCTCATCGCCCTTACG
TTTCCCGAAACCCGCCTCCCGCACCTAGCGCTCACACGCGTGGTAGCGCC
CTACTCCGACGCTTTAAACGCTTTCTTTCAGACACACCTTCTTCCTGAAC
TGGTGCAGCTGGTCTTGGCATTGCCGCAACATTTTTTGGACGCCGTATTT
CCTATGTCCCATGACCATCCATCCTTTGCCGGGCCCCCTTTTTTGGAAAG
CCCTCGGCATCAACGACAGCAATATTATGCCCGGCGTCGTCGATCTTCCC
TCCTTTCCTTGTCAAAAGCAGGCGTAATCACATTCTCTCATGTGCAGGCT
ACCCCAACCCGTCGCTCTGCTTTTGAAAGGATCCTAGACACCTCTCCACC
ACCATCGTCCCCTCCTCGCGTGGTACCCCCGACGAACGTGACGCTTTATC
CTCCCTCTACGCCCGCTTTACCTTCTGCGTCCTGTGATATTTATCGATCA
TCGCCACGAGCATCACGGCAAAGGCCAGTTTCACCGCCCAAGCCCAATTA
CCCCCACCAAAGGCAAAAAGTGATGCGGCCGCACGAGCAACAGCAGCAGC
AGCAGCAGCAGCCACAACAACAGCCATCGCAACGGCAGCAGCAGCATCAA
GATAAACCACGAAATCCCTCCCCACCCCCCCCTCCCAAGCCGCAGCACAA
ACGCCCTGTCTCACCACCCTTCCATCTCTCCCCTCCTCTCCCATCATTGT
CAAAAGTAGCAACATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAACAGCAGCAACAGCAACAGCCAAACCTGAGCACTTTTCGTC
GTCAAATGTTAGTGTCCGACATCGTCACCTCTCTGGATTGACTGCGATTG
CCTCCTCCCCTTCATCCCTTCCTCCCTCCTCGTCTTCCCCTTGTGGACAG
AGATCCATCTCCATGCCTCGTGCGGATTCAGGCGAGGAGAAAGTAAACAG
CAGCAGCAGCAGTAGTAATAGTAGTAGTAGTAGTAGTAGTAGCAGCAGCA
GCAGGAGCAGCAGCAGCAGTGGTAGTAGCAGTAGTGGCAGTAGTAGCAAC
AGTAGACGCAGACGCCCTTCTTCTCTCCCTCTTCTTTCTTCTGGCTTGAC
AAGAGCAGGAGCAGCTGTTGCCCCTTTCTCCCGATCAAGACCCTCCTCTA
CCCCACGCACGGATTTACGCAAAGAGAGCACTCGCACCAGCAGCAGCAGC
ACCACCACCCATCCCTCTTCCCTCCCACATTCCTTCAGTAAGATGGGAGA
CGAGGAGGGAGGAGAAAGAGGACGAGGAGGAGGAGGACGAGGAGGAAGGG
GCAGGGGGGGTAACTCGCGGTGGGCAGAGAAAATGCAAGTATCCAGCGAG
GAAAGTCGGGCACCCTCTCCTCGTGTGTCAAGACTAGCCCCATCGGGAGG
AGAGAGGATGAAGTGTAGGTGGGAAGAACGATGA
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Synonyms
Publications