NO02G04960.1, NO02G04960.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G04960.1
Unique Name	NO02G04960.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	4226
Alignment location	chr2:1329338..1333563 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:1329338..1333563 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO02G04960.1 vs.
Match: EWM30158.1 (hypothetical protein Naga_100096g4 [Nannochloropsis gaditana])

HSP 1 Score: 144.4 bits (363), Expect = 1.700e-30
Identity = 227/617 (36.79%), Postives = 299/617 (48.46%), Query Frame = 0

Query:  143 SSSSISISGNTASRGIVSLPSASIAVDGKNKTLSSSFSSAWAKPASGSGL---LSTSSSLDSTGSSSPVYGLSPNKQVELNNNRNNTNHNESNNNSSSSKSCSSSSSNSSSSSSSSSS-SSSSSSNSSSNNKKSDNSSRSNSNSNNSGSSGSLPHSLTVQELKELTRMRLAREAGIITPFSAPREGGTEVSDTIDIINNAINNYNNNNTQRHNQKNNHGHKNHRQQQQQQQQRCRGRSSSIAPSPSSSSSSPPSTSQPPSPEFTSVHG------SVETAASRSTNHSSVSPRSPTTAGLGSLFPHPICSSSSPRHLDNSSLAAAFEVGLGS---NQGGPQQQQQQHRHLYHDCDDVIVGQ------KGGMEGERADVTSIASP-REEKIMGATTER-VGDESGMKKASEEKETLIRTSCGSRSKNSCQTIDMRHGFNKFNCNSTVIPEAT-GAAAS-SMRVMIPSPYNLTLATLTRTSSDDLCMPSLRQRSISSTSSSAEMEDLPRQMAEYVLLTPKSPGVPLHAHHDYGNSSSSGGGGSSSLSSSSPFLALLPPHLQHPHQKCVTAPPGLGYGEEM-------EWAAMDSKLKRIRSSERLLQLKEEVEEAMRKKA 730
            S +++S+ G +    +   P  S+   G  K L S    +     +G G    L   S  +S     PV  +S        +       ++     S+S    + +S S   S+S SS  S + S SS+N   S   + S    N+S  + SLPHSLTVQELKELTRMRLAREAGI+T      EGG +   + +               R      HG      +Q     RCRG S S + +P+S  +SP   S+PPSP+   + G      + ETA   S   S+V+P SP   G   L     C +SSP          A   G      N G   Q+++          +  VG+       GG+E + A V  +ASP RE K  G    R V  +      S++ E        S   +S            F+  +  +   T G  AS  MR+M+PSP  + +    R SSDDLCMPSLRQRSISSTSSSAEMEDLPR++AEYVLLTPKSPG PL A+      +S   G ++S  +S P L LLPPHLQHPHQK V A  G G G E+       +  A+D +++RIRSSERLLQLKEEVEEAMR+KA
Sbjct:  101 SHTAVSLKGISTHDLVQQSPGGSMG--GNEKALESREGLSTRSCPTGYGTPLGLRNESKRESENREKPVSSVSFGTDRACLDLSLGCRLDKKTAGCSTSTPWEAGASGSGQLSTSPSSLESDAQSLSSTNRGTSPGLASSRGGGNSSIPTSSLPHSLTVQELKELTRMRLAREAGIVT-LPGTMEGGPDTRLSPE-------------EGRCQYAPKHGQGPRTMRQSTHPHRCRGPSPSTSSTPASPMNSP-MVSRPPSPQLYPMKGQSSESSTEETATQSSLPTSAVAP-SPIPCGGAPLSSS--CPASSPSFSFPGVPECANPPGTRDSVPNMGLRDQERRPELDSEGQGGEQSVGEAEWEGANGGLEKQEARV--VASPGREVKSEGTKCRRPVATQREAWVVSDDAEA----PTSSLPSHSPSYDPASRELPAFSFGAPSLSRGTLGLGASLGMRLMVPSPRTMAMGAHVRGSSDDLCMPSLRQRSISSTSSSAEMEDLPREVAEYVLLTPKSPGSPLMANALSFPGNSGQYGSAASAGASRPVLTLLPPHLQHPHQKRVAA-VGEGVGGEVAGSEDKRDGKALDVQMRRIRSSERLLQLKEEVEEAMRRKA 690

The following BLAST results are available for this feature:

BLAST of NO02G04960.1 vs.

BLAST of NO02G04960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM30158.1	1.700e-30	36.79	hypothetical protein Naga_100096g4 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G04960	NO02G04960	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G04960.1	NO02G04960.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G04960.1.cds1	NO02G04960.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:1329338..1333563-
coding sequence from alignment at chr2:1329338..1333563-

mRNA sequence

>NO02G04960.1 ID=NO02G04960.1|Name=NO02G04960.1|organism=Nannochloropsis oceanica|type=mRNA|length=4226bp
GGCCTGTCCGTATCTGCGCGTATGGGAGGGAAAAGGAGAAAGGAGTAAAG
GAAGGATTGCGGCTGCGAGAAGGGCCTGTCTGGTCTATCCCTGTATGTAG
ATTATTGTCCCCGCCAAATCCCAGAGAAAAGGAAAGAAAGACAAGAAAAA
ACGTACGATGGGGTTTTCCGGGACGAGTCTCGCATGATTCTCCTTGGTCT
TTCTTTCTTTGCGTCCAATGGCGGTGTTAACGGGATGCTTTGTTGCCAAG
GTCTAGACTCTGTTGACGGAGGTCTGGCACAAGGTCTTCTTCGCCGCTTT
GTAGGCTTCGTAGATATCCGGTCATAAACAGCGAAGGAAAATCCAAGTTT
CTTCGCCTCCAAAAACCGCCCATAACCATTTGCGGTGCAATATCAATGAC
CAACACCAGAAAGTGCACATCAAGGTGCAGCAGTTTGTTGCCCCTCGATG
GACGAAACGAATAGAACATCCTTCGATTTGGCGCACGCATTTCATACGAT
ACCGCGCGGAAGGCCCGGGTCTGCCCTTCGTAAGTCATTCCCTTTGGCCA
CCACGGTGACGCATGTTTGAGACGCAGAGATGAGCAGTCTGCTCTTTTCG
CAGACAGCAGGCGATCCCCGTTGATGGAATATCGAAGCTGCGTGAGTCAA
GGTCCCGCATCCCAACCAGCTCAGAGCTCGCTTTTCCAACACACAAAATA
AGACTTTGGTTCGGAATCGGTTATGAATGGAAACTTGGCTTCGACAAGGT
CTCTCTCGAACCGCCCGCAGATTATTTGAGTCAGCTCCAGTGAGACGATG
GAATTTCAACTGAAGTTTCCAACAACAAGCATTGATGCGTCGCTACTGTC
GTTGTAGTTCTGAGTCTTCTTTTACTCATGTCATGAGGAAGGCTTTATGC
ATAGCACATATTGCCCTTGTTGTCGCCTGTGGCATTTACTTTGCCTCGTG
GCTCTCCCGCTGCAGACCCTTATGCGGGCCATCAGGGCTCAAATTGTTCT
GTATGACTCAATCGGGCAGTGGGGGCGAAGAAGGACATGCGCCGCCGGGC
CATCAAAGAGAGAGTTAGTGTGTACACATGCCACTTTCTGGACCGCGTGG
TCTTGCGCAGCAGTAACGCTCAACAACCGAGAGGCACGTGCCACGTCCTC
TCAGGTGCACGACATTTGCGTTACAGCCATCATATTTTCCCCCTGCGCCG
GTCGTGTGGTTCCAAATTCGACTCACGGGTGCTCGAAAAAGGAGGCGCTT
CTTTTTAGACTTTTGAGTCGTCTTATTCTACCAAACTCACGTGAATAAAC
ATACACGGACAGGTCAACGGCAGGACTCCCATGACGCAGCCGGAGCAGCC
CTGGCAGCAGCTCTGAAAAGCCCCAAAGAGAGAAGCGCCTCACCGCCTTC
ATTTTCGTCGTACTTAACTGGGTCAGAAATACGAAGCAAGAAAGGCCCCG
CACACACGGACCACAACAGCAGCCAGAGCAACCAAGACCACCTCTATCTG
CTGATCGAGCACTCAAGAAGATGACGGGGGGGCCTAAGCAAGCCACTCGA
CGCACCACCGGCCGCGCCACTGGCCTGTGCACCAACAGTGGTGGCGACGC
CCATCCATCATCTTTGAAAACAGGCATCACAGTCCAAGAGCTCAAGCAAA
TCACAGCCATGCGCATGGCACAAATGCGGCATACTTCCCCATTGTCCGTT
CCGGCCATCACCGAATCTTCATCCCCCCCCTACCCCACTGCAGCGCCCGT
AGGCGTTCCCGTAGAATGCCCCTTGGCGCTGTCCCCACCAATGCCCAATA
GCACACACCCTTTGCTATCTCAAGCGGCCAATCTATCATCGTCCCAGCAA
GCCCTCGCTCCAGATTGTTTATACGGAGCGGCCGGTGAACTTGTGAATCA
ATCTGGGAGCGGGAACATAGAAGTCGGACACGAGCTGCGCGTCAGCAGCA
GCAGCAGCATCAGCATCAGCGGGAACACAGCGAGCAGGGGCATCGTGTCG
TTGCCAAGTGCTTCCATTGCGGTGGACGGCAAGAACAAGACTCTTTCCTC
GTCTTTCTCCTCGGCATGGGCCAAGCCCGCGAGTGGAAGTGGACTGCTGA
GCACGTCATCCTCCCTGGACTCCACCGGCAGCAGCAGTCCGGTGTACGGG
TTGTCGCCTAACAAACAAGTAGAGCTGAACAACAACAGAAACAACACCAA
CCACAACGAGAGCAACAACAATAGCAGCAGCAGCAAAAGCTGCAGCAGCA
GCAGCAGCAATAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAATAGCAGCAGCAACAACAAGAAAAGCGACAATAGTAGCCG
CAGCAACAGCAACAGCAACAACAGCGGCAGTAGTGGTAGCTTGCCGCACA
GTCTGACAGTGCAAGAATTGAAGGAACTAACCCGCATGCGTCTAGCGCGG
GAGGCAGGTATCATCACTCCCTTTTCTGCGCCGAGAGAAGGCGGGACCGA
GGTTAGCGATACCATTGACATCATCAACAACGCCATCAACAACTATAACA
ATAACAACACTCAGCGTCACAATCAAAAAAACAACCACGGCCACAAGAAT
CATCGCCAGCAGCAACAGCAGCAGCAGCAGCGATGCCGAGGGCGCTCTTC
TTCCATTGCCCCCTCCCCCTCTTCCTCCTCCTCAAGCCCACCCTCGACAT
CGCAACCCCCCAGCCCGGAATTTACTTCTGTGCATGGATCCGTGGAAACA
GCAGCGTCTCGGTCAACAAATCATAGCTCTGTATCTCCCCGTTCCCCTAC
CACCGCGGGACTCGGCTCGTTGTTTCCCCATCCTATCTGTTCTTCCTCCT
CCCCCCGGCACTTGGACAACAGCAGCCTAGCCGCTGCTTTCGAGGTCGGG
CTGGGAAGCAACCAGGGGGGACCACAGCAGCAGCAACAGCAACACCGTCA
CTTGTACCACGATTGCGACGATGTGATTGTCGGACAAAAGGGAGGAATGG
AAGGAGAAAGAGCCGATGTGACCAGCATTGCTAGTCCGCGGGAGGAGAAG
ATTATGGGGGCCACAACGGAGAGAGTTGGAGATGAAAGTGGGATGAAAAA
GGCGTCTGAAGAAAAGGAGACATTGATAAGGACGAGCTGCGGCAGCAGAA
GCAAGAATAGCTGCCAGACTATCGATATGCGCCACGGCTTCAACAAATTC
AACTGCAATTCCACCGTCATTCCCGAGGCCACCGGGGCTGCTGCAAGCTC
CATGCGTGTCATGATCCCCTCGCCCTATAACCTCACTCTAGCCACTCTCA
CCCGCACCAGCAGCGACGATCTCTGCATGCCTTCGCTTCGTCAGCGTTCT
ATCTCCTCTACCTCCTCTTCCGCCGAAATGGAAGACCTTCCGCGCCAAAT
GGCTGAGTACGTCCTCCTCACACCCAAATCACCCGGGGTACCTCTCCACG
CCCACCACGATTATGGCAACAGCAGCAGCAGTGGCGGCGGCGGCAGCAGC
AGTCTCAGCAGCAGCAGCCCTTTCCTTGCTCTCCTACCTCCTCACTTGCA
GCATCCCCATCAAAAATGCGTAACGGCTCCTCCAGGGTTGGGGTATGGAG
AAGAGATGGAGTGGGCAGCGATGGATAGCAAGTTGAAGAGAATTCGGTCG
TCGGAGAGACTGCTGCAATTGAAGGAGGAGGTGGAGGAAGCGATGCGGAA
GAAGGCCACGCGCGCGCAGCAGCAGCAGCAGCAGATTGATGGGAAGGACG
AAGAGGGAGTGGAGAAAGTGGAGGAGAATGAGATTGAGGAAGAGGAGAAG
GACGAGGAGGGGAAGCAGCAACAGGAACTTCAAGTGGAGGTGGAGGTGGA
GGATAAGGAGGTTGATGCCATGGAGCACTATAAGTGCAACCGACTTTCTG
TCATTGTCTCGACTGTGGAGCAGAACGACGACTCGACCTCAAGCTGCAAC
CCGTCTTCCACTTATTCCTCCCTCGGGTCATCTTCTTCTCTTTCCTTTAA
GAGGGTGTCCAGAGATGGGATAAGTCCTACTGCCCAGCAGCTCGACATGA
TGGCGGGTGGTTTCGGCATGGCTACCTCTTCTGGTGGGTGCACGCAAAGC
TGTCGGCGGAGCTCTTTTGTCATCCACCAGCCGCAGTCCCAGTCGTTCAA
TTTGAAGCACCAGCACCAGCACCAGCAAGGAAAGGAACAGACATCTATGT
ATAGGTGGCTACTTCCTATTTTGTAG

protein sequence of NO02G04960.1

>NO02G04960.1-protein ID=NO02G04960.1-protein|Name=NO02G04960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=902bp
MTGGPKQATRRTTGRATGLCTNSGGDAHPSSLKTGITVQELKQITAMRMA
QMRHTSPLSVPAITESSSPPYPTAAPVGVPVECPLALSPPMPNSTHPLLS
QAANLSSSQQALAPDCLYGAAGELVNQSGSGNIEVGHELRVSSSSSISIS
GNTASRGIVSLPSASIAVDGKNKTLSSSFSSAWAKPASGSGLLSTSSSLD
STGSSSPVYGLSPNKQVELNNNRNNTNHNESNNNSSSSKSCSSSSSNSSS
SSSSSSSSSSSSSNSSSNNKKSDNSSRSNSNSNNSGSSGSLPHSLTVQEL
KELTRMRLAREAGIITPFSAPREGGTEVSDTIDIINNAINNYNNNNTQRH
NQKNNHGHKNHRQQQQQQQQRCRGRSSSIAPSPSSSSSSPPSTSQPPSPE
FTSVHGSVETAASRSTNHSSVSPRSPTTAGLGSLFPHPICSSSSPRHLDN
SSLAAAFEVGLGSNQGGPQQQQQQHRHLYHDCDDVIVGQKGGMEGERADV
TSIASPREEKIMGATTERVGDESGMKKASEEKETLIRTSCGSRSKNSCQT
IDMRHGFNKFNCNSTVIPEATGAAASSMRVMIPSPYNLTLATLTRTSSDD
LCMPSLRQRSISSTSSSAEMEDLPRQMAEYVLLTPKSPGVPLHAHHDYGN
SSSSGGGGSSSLSSSSPFLALLPPHLQHPHQKCVTAPPGLGYGEEMEWAA
MDSKLKRIRSSERLLQLKEEVEEAMRKKATRAQQQQQQIDGKDEEGVEKV
EENEIEEEEKDEEGKQQQELQVEVEVEDKEVDAMEHYKCNRLSVIVSTVE
QNDDSTSSCNPSSTYSSLGSSSSLSFKRVSRDGISPTAQQLDMMAGGFGM
ATSSGGCTQSCRRSSFVIHQPQSQSFNLKHQHQHQQGKEQTSMYRWLLPI
L*

mRNA from alignment at chr2:1329338..1333563-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G04960.1 ID=NO02G04960.1|Name=NO02G04960.1|organism=Nannochloropsis oceanica|type=mRNA|length=4226bp|location=Sequence derived from alignment at chr2:1329338..1333563- (Nannochloropsis oceanica)
GGCCTGTCCGTATCTGCGCGTATGGGAGGGAAAAGGAGAAAGGAGTAAAG
GAAGGATTGCGGCTGCGAGAAGGGCCTGTCTGGTCTATCCCTGTATGTAG
ATTATTGTCCCCGCCAAATCCCAGAGAAAAGGAAAGAAAGACAAGAAAAA
ACGTACGATGGGGTTTTCCGGGACGAGTCTCGCATGATTCTCCTTGGTCT
TTCTTTCTTTGCGTCCAATGGCGGTGTTAACGGGATGCTTTGTTGCCAAG
GTCTAGACTCTGTTGACGGAGGTCTGGCACAAGGTCTTCTTCGCCGCTTT
GTAGGCTTCGTAGATATCCGGTCATAAACAGCGAAGGAAAATCCAAGTTT
CTTCGCCTCCAAAAACCGCCCATAACCATTTGCGGTGCAATATCAATGAC
CAACACCAGAAAGTGCACATCAAGGTGCAGCAGTTTGTTGCCCCTCGATG
GACGAAACGAATAGAACATCCTTCGATTTGGCGCACGCATTTCATACGAT
ACCGCGCGGAAGGCCCGGGTCTGCCCTTCGTAAGTCATTCCCTTTGGCCA
CCACGGTGACGCATGTTTGAGACGCAGAGATGAGCAGTCTGCTCTTTTCG
CAGACAGCAGGCGATCCCCGTTGATGGAATATCGAAGCTGCGTGAGTCAA
GGTCCCGCATCCCAACCAGCTCAGAGCTCGCTTTTCCAACACACAAAATA
AGACTTTGGTTCGGAATCGGTTATGAATGGAAACTTGGCTTCGACAAGGT
CTCTCTCGAACCGCCCGCAGATTATTTGAGTCAGCTCCAGTGAGACGATG
GAATTTCAACTGAAGTTTCCAACAACAAGCATTGATGCGTCGCTACTGTC
GTTGTAGTTCTGAGTCTTCTTTTACTCATGTCATGAGGAAGGCTTTATGC
ATAGCACATATTGCCCTTGTTGTCGCCTGTGGCATTTACTTTGCCTCGTG
GCTCTCCCGCTGCAGACCCTTATGCGGGCCATCAGGGCTCAAATTGTTCT
GTATGACTCAATCGGGCAGTGGGGGCGAAGAAGGACATGCGCCGCCGGGC
CATCAAAGAGAGAGTTAGTGTGTACACATGCCACTTTCTGGACCGCGTGG
TCTTGCGCAGCAGTAACGCTCAACAACCGAGAGGCACGTGCCACGTCCTC
TCAGGTGCACGACATTTGCGTTACAGCCATCATATTTTCCCCCTGCGCCG
GTCGTGTGGTTCCAAATTCGACTCACGGGTGCTCGAAAAAGGAGGCGCTT
CTTTTTAGACTTTTGAGTCGTCTTATTCTACCAAACTCACGTGAATAAAC
ATACACGGACAGGTCAACGGCAGGACTCCCATGACGCAGCCGGAGCAGCC
CTGGCAGCAGCTCTGAAAAGCCCCAAAGAGAGAAGCGCCTCACCGCCTTC
ATTTTCGTCGTACTTAACTGGGTCAGAAATACGAAGCAAGAAAGGCCCCG
CACACACGGACCACAACAGCAGCCAGAGCAACCAAGACCACCTCTATCTG
CTGATCGAGCACTCAAGAAGATGACGGGGGGGCCTAAGCAAGCCACTCGA
CGCACCACCGGCCGCGCCACTGGCCTGTGCACCAACAGTGGTGGCGACGC
CCATCCATCATCTTTGAAAACAGGCATCACAGTCCAAGAGCTCAAGCAAA
TCACAGCCATGCGCATGGCACAAATGCGGCATACTTCCCCATTGTCCGTT
CCGGCCATCACCGAATCTTCATCCCCCCCCTACCCCACTGCAGCGCCCGT
AGGCGTTCCCGTAGAATGCCCCTTGGCGCTGTCCCCACCAATGCCCAATA
GCACACACCCTTTGCTATCTCAAGCGGCCAATCTATCATCGTCCCAGCAA
GCCCTCGCTCCAGATTGTTTATACGGAGCGGCCGGTGAACTTGTGAATCA
ATCTGGGAGCGGGAACATAGAAGTCGGACACGAGCTGCGCGTCAGCAGCA
GCAGCAGCATCAGCATCAGCGGGAACACAGCGAGCAGGGGCATCGTGTCG
TTGCCAAGTGCTTCCATTGCGGTGGACGGCAAGAACAAGACTCTTTCCTC
GTCTTTCTCCTCGGCATGGGCCAAGCCCGCGAGTGGAAGTGGACTGCTGA
GCACGTCATCCTCCCTGGACTCCACCGGCAGCAGCAGTCCGGTGTACGGG
TTGTCGCCTAACAAACAAGTAGAGCTGAACAACAACAGAAACAACACCAA
CCACAACGAGAGCAACAACAATAGCAGCAGCAGCAAAAGCTGCAGCAGCA
GCAGCAGCAATAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAATAGCAGCAGCAACAACAAGAAAAGCGACAATAGTAGCCG
CAGCAACAGCAACAGCAACAACAGCGGCAGTAGTGGTAGCTTGCCGCACA
GTCTGACAGTGCAAGAATTGAAGGAACTAACCCGCATGCGTCTAGCGCGG
GAGGCAGGTATCATCACTCCCTTTTCTGCGCCGAGAGAAGGCGGGACCGA
GGTTAGCGATACCATTGACATCATCAACAACGCCATCAACAACTATAACA
ATAACAACACTCAGCGTCACAATCAAAAAAACAACCACGGCCACAAGAAT
CATCGCCAGCAGCAACAGCAGCAGCAGCAGCGATGCCGAGGGCGCTCTTC
TTCCATTGCCCCCTCCCCCTCTTCCTCCTCCTCAAGCCCACCCTCGACAT
CGCAACCCCCCAGCCCGGAATTTACTTCTGTGCATGGATCCGTGGAAACA
GCAGCGTCTCGGTCAACAAATCATAGCTCTGTATCTCCCCGTTCCCCTAC
CACCGCGGGACTCGGCTCGTTGTTTCCCCATCCTATCTGTTCTTCCTCCT
CCCCCCGGCACTTGGACAACAGCAGCCTAGCCGCTGCTTTCGAGGTCGGG
CTGGGAAGCAACCAGGGGGGACCACAGCAGCAGCAACAGCAACACCGTCA
CTTGTACCACGATTGCGACGATGTGATTGTCGGACAAAAGGGAGGAATGG
AAGGAGAAAGAGCCGATGTGACCAGCATTGCTAGTCCGCGGGAGGAGAAG
ATTATGGGGGCCACAACGGAGAGAGTTGGAGATGAAAGTGGGATGAAAAA
GGCGTCTGAAGAAAAGGAGACATTGATAAGGACGAGCTGCGGCAGCAGAA
GCAAGAATAGCTGCCAGACTATCGATATGCGCCACGGCTTCAACAAATTC
AACTGCAATTCCACCGTCATTCCCGAGGCCACCGGGGCTGCTGCAAGCTC
CATGCGTGTCATGATCCCCTCGCCCTATAACCTCACTCTAGCCACTCTCA
CCCGCACCAGCAGCGACGATCTCTGCATGCCTTCGCTTCGTCAGCGTTCT
ATCTCCTCTACCTCCTCTTCCGCCGAAATGGAAGACCTTCCGCGCCAAAT
GGCTGAGTACGTCCTCCTCACACCCAAATCACCCGGGGTACCTCTCCACG
CCCACCACGATTATGGCAACAGCAGCAGCAGTGGCGGCGGCGGCAGCAGC
AGTCTCAGCAGCAGCAGCCCTTTCCTTGCTCTCCTACCTCCTCACTTGCA
GCATCCCCATCAAAAATGCGTAACGGCTCCTCCAGGGTTGGGGTATGGAG
AAGAGATGGAGTGGGCAGCGATGGATAGCAAGTTGAAGAGAATTCGGTCG
TCGGAGAGACTGCTGCAATTGAAGGAGGAGGTGGAGGAAGCGATGCGGAA
GAAGGCCACGCGCGCGCAGCAGCAGCAGCAGCAGATTGATGGGAAGGACG
AAGAGGGAGTGGAGAAAGTGGAGGAGAATGAGATTGAGGAAGAGGAGAAG
GACGAGGAGGGGAAGCAGCAACAGGAACTTCAAGTGGAGGTGGAGGTGGA
GGATAAGGAGGTTGATGCCATGGAGCACTATAAGTGCAACCGACTTTCTG
TCATTGTCTCGACTGTGGAGCAGAACGACGACTCGACCTCAAGCTGCAAC
CCGTCTTCCACTTATTCCTCCCTCGGGTCATCTTCTTCTCTTTCCTTTAA
GAGGGTGTCCAGAGATGGGATAAGTCCTACTGCCCAGCAGCTCGACATGA
TGGCGGGTGGTTTCGGCATGGCTACCTCTTCTGGTGGGTGCACGCAAAGC
TGTCGGCGGAGCTCTTTTGTCATCCACCAGCCGCAGTCCCAGTCGTTCAA
TTTGAAGCACCAGCACCAGCACCAGCAAGGAAAGGAACAGACATCTATGT
ATAGGTGGCTACTTCCTATTTTGTAG

Coding sequence (CDS) from alignment at chr2:1329338..1333563-

>NO02G04960.1 ID=NO02G04960.1|Name=NO02G04960.1|organism=Nannochloropsis oceanica|type=CDS|length=2706bp|location=Sequence derived from alignment at chr2:1329338..1333563- (Nannochloropsis oceanica)
ATGACGGGGGGGCCTAAGCAAGCCACTCGACGCACCACCGGCCGCGCCAC
TGGCCTGTGCACCAACAGTGGTGGCGACGCCCATCCATCATCTTTGAAAA
CAGGCATCACAGTCCAAGAGCTCAAGCAAATCACAGCCATGCGCATGGCA
CAAATGCGGCATACTTCCCCATTGTCCGTTCCGGCCATCACCGAATCTTC
ATCCCCCCCCTACCCCACTGCAGCGCCCGTAGGCGTTCCCGTAGAATGCC
CCTTGGCGCTGTCCCCACCAATGCCCAATAGCACACACCCTTTGCTATCT
CAAGCGGCCAATCTATCATCGTCCCAGCAAGCCCTCGCTCCAGATTGTTT
ATACGGAGCGGCCGGTGAACTTGTGAATCAATCTGGGAGCGGGAACATAG
AAGTCGGACACGAGCTGCGCGTCAGCAGCAGCAGCAGCATCAGCATCAGC
GGGAACACAGCGAGCAGGGGCATCGTGTCGTTGCCAAGTGCTTCCATTGC
GGTGGACGGCAAGAACAAGACTCTTTCCTCGTCTTTCTCCTCGGCATGGG
CCAAGCCCGCGAGTGGAAGTGGACTGCTGAGCACGTCATCCTCCCTGGAC
TCCACCGGCAGCAGCAGTCCGGTGTACGGGTTGTCGCCTAACAAACAAGT
AGAGCTGAACAACAACAGAAACAACACCAACCACAACGAGAGCAACAACA
ATAGCAGCAGCAGCAAAAGCTGCAGCAGCAGCAGCAGCAATAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATAGCAGCAG
CAACAACAAGAAAAGCGACAATAGTAGCCGCAGCAACAGCAACAGCAACA
ACAGCGGCAGTAGTGGTAGCTTGCCGCACAGTCTGACAGTGCAAGAATTG
AAGGAACTAACCCGCATGCGTCTAGCGCGGGAGGCAGGTATCATCACTCC
CTTTTCTGCGCCGAGAGAAGGCGGGACCGAGGTTAGCGATACCATTGACA
TCATCAACAACGCCATCAACAACTATAACAATAACAACACTCAGCGTCAC
AATCAAAAAAACAACCACGGCCACAAGAATCATCGCCAGCAGCAACAGCA
GCAGCAGCAGCGATGCCGAGGGCGCTCTTCTTCCATTGCCCCCTCCCCCT
CTTCCTCCTCCTCAAGCCCACCCTCGACATCGCAACCCCCCAGCCCGGAA
TTTACTTCTGTGCATGGATCCGTGGAAACAGCAGCGTCTCGGTCAACAAA
TCATAGCTCTGTATCTCCCCGTTCCCCTACCACCGCGGGACTCGGCTCGT
TGTTTCCCCATCCTATCTGTTCTTCCTCCTCCCCCCGGCACTTGGACAAC
AGCAGCCTAGCCGCTGCTTTCGAGGTCGGGCTGGGAAGCAACCAGGGGGG
ACCACAGCAGCAGCAACAGCAACACCGTCACTTGTACCACGATTGCGACG
ATGTGATTGTCGGACAAAAGGGAGGAATGGAAGGAGAAAGAGCCGATGTG
ACCAGCATTGCTAGTCCGCGGGAGGAGAAGATTATGGGGGCCACAACGGA
GAGAGTTGGAGATGAAAGTGGGATGAAAAAGGCGTCTGAAGAAAAGGAGA
CATTGATAAGGACGAGCTGCGGCAGCAGAAGCAAGAATAGCTGCCAGACT
ATCGATATGCGCCACGGCTTCAACAAATTCAACTGCAATTCCACCGTCAT
TCCCGAGGCCACCGGGGCTGCTGCAAGCTCCATGCGTGTCATGATCCCCT
CGCCCTATAACCTCACTCTAGCCACTCTCACCCGCACCAGCAGCGACGAT
CTCTGCATGCCTTCGCTTCGTCAGCGTTCTATCTCCTCTACCTCCTCTTC
CGCCGAAATGGAAGACCTTCCGCGCCAAATGGCTGAGTACGTCCTCCTCA
CACCCAAATCACCCGGGGTACCTCTCCACGCCCACCACGATTATGGCAAC
AGCAGCAGCAGTGGCGGCGGCGGCAGCAGCAGTCTCAGCAGCAGCAGCCC
TTTCCTTGCTCTCCTACCTCCTCACTTGCAGCATCCCCATCAAAAATGCG
TAACGGCTCCTCCAGGGTTGGGGTATGGAGAAGAGATGGAGTGGGCAGCG
ATGGATAGCAAGTTGAAGAGAATTCGGTCGTCGGAGAGACTGCTGCAATT
GAAGGAGGAGGTGGAGGAAGCGATGCGGAAGAAGGCCACGCGCGCGCAGC
AGCAGCAGCAGCAGATTGATGGGAAGGACGAAGAGGGAGTGGAGAAAGTG
GAGGAGAATGAGATTGAGGAAGAGGAGAAGGACGAGGAGGGGAAGCAGCA
ACAGGAACTTCAAGTGGAGGTGGAGGTGGAGGATAAGGAGGTTGATGCCA
TGGAGCACTATAAGTGCAACCGACTTTCTGTCATTGTCTCGACTGTGGAG
CAGAACGACGACTCGACCTCAAGCTGCAACCCGTCTTCCACTTATTCCTC
CCTCGGGTCATCTTCTTCTCTTTCCTTTAAGAGGGTGTCCAGAGATGGGA
TAAGTCCTACTGCCCAGCAGCTCGACATGATGGCGGGTGGTTTCGGCATG
GCTACCTCTTCTGGTGGGTGCACGCAAAGCTGTCGGCGGAGCTCTTTTGT
CATCCACCAGCCGCAGTCCCAGTCGTTCAATTTGAAGCACCAGCACCAGC
ACCAGCAAGGAAAGGAACAGACATCTATGTATAGGTGGCTACTTCCTATT
TTGTAG

Synonyms

Publications