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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:1324842..1327234 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G04940.1 vs.
Match: EWM30164.1 (hypothetical protein Naga_100096g1 [Nannochloropsis gaditana]) HSP 1 Score: 90.1 bits (222), Expect = 2.800e-14 Identity = 238/694 (34.29%), Postives = 310/694 (44.67%), Query Frame = 0
Query: 4 RAVSQPGTPTAGGGGGGGGGGIRGFELQQQQQYIHPQQQQQQQTRRKQQQPFPQEQQQQQQNAQQQQHYQHQHPFQGGRPQQQQQQQLQYHHLQLPQQHQQHQQ--LYTAQSQVSSPGSG--KKKKGGGSGQGHHHQQQQLPQPQAPPQHQQVQQQQGQSKPAPPQPSGSGGK----PATSTTAPALPPGSSATVGLDLASSSSSSTNGRAAKASVTEGGGGGCEGGVKGAASSAVSASGVSGEAGTAAPKKSKNKKKSQQQQQQQQQGGAPVPAPQPPVVISLSQDNFPPLSS---PGG-SSLPLSTLIDGTGVGGGETTAQKLATFHAASSAVLSAPSSSSHVYKPAVLTPPS-----SSTTVWKEGGKEESGVTTSAAAGAPVPNETSAAGPSTQASSSGKSPAGSAAGGA---------VGKTEEEGVKTTVAPAPEKATFSITSPSTSSIATSSSSSSHSILSSPRPAPAAA--PAAGSPTPKGPWAAAVLRGPTLSDPHVPVRLPLRSATPASTTASSSSSSSSSSSSSSNSNSNNNNNNKNATTAAVTTSTSSSTSGAATGLDGSGGPSVAATAPSTGEGRSAIGGGSGGGGGGDEGEKKAVGNGTTAKDDSKVFADAGLTTKSGKSASVNAPLSSSSSSPRMSSTTPPSAVPIAGKGPWGKKSFVEVVR-TMGGVGEGGEKGGGEK 669
RA SQP +PT GGGG RGFE Q P Q Q RRKQ PQ QQ Q+AQ Q + GGR QQQQ QL H QHQ H Q ++ PG+G KKKKGGG H QQ + Q G + PA G GG P++ST AP P +V + NGR A+ EGGG G G+ G + GE TAAP SK K ++ QQQQQQG AP PV ISL+QDNFPPLS+ PG + G G+G + A+ + + SH + T PS + + K S V A A + G +A S P A G E+ +T ++ S TS + +S +T++S+ + S S+P P++A P A P PKGPWAAAVLRG DP VPVRLPLR+A PAS +A++S S+S+++SS SN++ S++ +G+ + G GGP + + E RSA G KK G+G +K + L SGK+A P +S ++ SS++P SA P+A KGPWG+KSFVEVVR T GG GG G EK
Sbjct: 138 RATSQPTSPTGGGGG-------RGFEGGQL-----PSQSAPAQARRKQ----PQSQQPHFQHAQAPGGQQ----YHGGRMQQQQLPQLLSH------QHQMHAQESMFGGGEMGPLPGTGLGKKKKGGGH---QSHPQQGAQRGAGGTPGQSPHPAHGTADPAH-LGGGRGGSMPAAPSSSTAAPLTGPEGKKSVVI----------NGRRGAAN-GEGGGSGAGAGMGGNGTGPTG-----GEGSTAAPVSSKKGKNKKKGQQQQQQGAAPGVVTPAPVEISLTQDNFPPLSNLPAPGALGEAGGNEKARGEGLGKEDKLPHAAPRPVASHMPTVGGDRAVSHANPSTLPTRPSPMVEKNDGSAGLPRAKGGSDVAPMVPANALESLQDKEGGLGKKAGESDTKPGDPACAAKDASLPPPTLTGSLVEKPPTSTSTSTTSSSSSSPTSSTATSTSTNTSTPALSTSSAPPSVPSSATTPTAPPPAPKGPWAAAVLRGAMHIDPSVPVRLPLRTAAPASPSAAASGGSASTAASSRASNND-----------------SATGAGSNVSVGGEGGPPSSMSTAIGEENRSA----------ASVGRKKMEGSGPERLGSNKPTSVEALAESSGKNAVPPIPGGTSPAATASSSSSPSSA-PVA-KGPWGRKSFVEVVRLTGGGQASGGGDGEEEK 756
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G04940.1 ID=NO02G04940.1|Name=NO02G04940.1|organism=Nannochloropsis oceanica|type=mRNA|length=2007bp ATGGGCTCGAGAGCAGTGTCACAGCCAGGAACGCCGACAGCTGGAGGGGG AGGAGGGGGAGGAGGGGGAGGAATAAGAGGATTTGAGCTGCAGCAACAGC AGCAGTACATCCACCCGCAGCAGCAGCAACAACAACAAACAAGGAGAAAA CAGCAACAGCCTTTCCCGCAGGAGCAGCAGCAGCAGCAGCAGAACGCCCA GCAGCAACAACACTACCAACACCAGCACCCCTTTCAGGGGGGGCGTCCGC AACAGCAGCAACAACAACAACTGCAGTACCATCACCTGCAGCTGCCGCAG CAGCACCAGCAGCATCAGCAACTATATACAGCCCAATCGCAGGTGTCTTC TCCAGGCTCGGGGAAGAAGAAGAAGGGGGGGGGAAGCGGGCAGGGTCATC ATCATCAGCAGCAGCAGCTACCACAACCACAAGCACCTCCTCAACATCAA CAGGTGCAGCAGCAACAAGGACAATCAAAACCAGCTCCTCCTCAACCGAG CGGCAGCGGCGGCAAGCCTGCGACGTCAACGACAGCACCAGCCCTCCCTC CTGGCAGCTCTGCTACCGTGGGTCTTGATCTCGCCAGCAGCAGCAGCAGC AGCACCAATGGGAGGGCGGCCAAAGCATCCGTCACGGAAGGAGGAGGAGG AGGATGCGAGGGAGGGGTAAAGGGCGCAGCGTCTTCCGCTGTTAGTGCCA GTGGGGTGAGCGGCGAGGCCGGCACCGCTGCACCGAAGAAGAGCAAAAAC AAGAAGAAGTCCCAGCAGCAACAGCAACAACAGCAGCAGGGTGGAGCACC TGTGCCTGCCCCTCAGCCTCCTGTCGTGATCAGTCTAAGCCAGGACAATT TTCCTCCTCTTTCCAGCCCTGGTGGTTCCTCCCTCCCTCTTTCAACTCTT ATCGACGGCACAGGGGTAGGCGGAGGAGAAACCACGGCGCAAAAGCTCGC TACTTTCCATGCCGCGTCCTCCGCCGTGCTTTCTGCTCCGTCGTCCTCCT CTCATGTCTACAAGCCAGCAGTATTAACGCCACCATCATCGTCAACCACA GTTTGGAAGGAGGGCGGGAAGGAGGAGAGCGGGGTGACAACAAGTGCTGC CGCAGGGGCTCCAGTGCCGAATGAAACATCTGCTGCCGGGCCTTCAACTC AAGCTTCTTCTTCTGGAAAATCACCAGCAGGATCGGCAGCAGGAGGAGCG GTCGGCAAGACCGAGGAGGAGGGTGTCAAGACGACTGTAGCACCAGCACC AGAAAAAGCTACCTTCAGTATTACTTCTCCCTCCACCTCCTCCATTGCCA CGAGTAGCAGCAGCAGCTCTCACTCAATCCTTTCCTCCCCTAGACCTGCA CCAGCAGCAGCGCCTGCTGCAGGATCCCCCACACCGAAGGGGCCGTGGGC AGCGGCTGTCCTCAGGGGTCCCACACTAAGCGATCCTCACGTCCCTGTAC GATTACCCCTAAGATCAGCCACTCCTGCGTCTACAACGGCCAGCAGCAGC AGTAGCAGTAGCAGCAGCAGTAGCAGCAGCAGCAACAGCAACAGCAACAA CAACAACAACAACAAAAACGCCACCACCGCCGCCGTTACCACCAGCACCA GCTCCAGCACCAGCGGTGCGGCCACGGGCCTTGATGGGAGTGGAGGGCCG TCTGTGGCGGCCACAGCACCTTCCACTGGGGAGGGTAGAAGTGCCATAGG GGGCGGGAGTGGGGGTGGAGGTGGAGGAGATGAAGGAGAGAAAAAAGCTG TGGGAAATGGAACTACTGCAAAGGACGACAGCAAAGTTTTCGCCGACGCT GGATTGACAACCAAGTCAGGCAAATCGGCCTCTGTCAATGCCCCCTTATC CTCCTCCTCCTCCTCTCCACGCATGTCTTCCACTACCCCTCCCTCGGCGG TGCCTATAGCCGGCAAGGGCCCATGGGGGAAGAAGAGTTTTGTGGAGGTG GTACGAACGATGGGAGGGGTAGGAGAGGGAGGAGAGAAGGGGGGTGGAGA AAAGTAG back to topprotein sequence of NO02G04940.1 >NO02G04940.1-protein ID=NO02G04940.1-protein|Name=NO02G04940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=669bp MGSRAVSQPGTPTAGGGGGGGGGGIRGFELQQQQQYIHPQQQQQQQTRRK QQQPFPQEQQQQQQNAQQQQHYQHQHPFQGGRPQQQQQQQLQYHHLQLPQ QHQQHQQLYTAQSQVSSPGSGKKKKGGGSGQGHHHQQQQLPQPQAPPQHQ QVQQQQGQSKPAPPQPSGSGGKPATSTTAPALPPGSSATVGLDLASSSSS STNGRAAKASVTEGGGGGCEGGVKGAASSAVSASGVSGEAGTAAPKKSKN KKKSQQQQQQQQQGGAPVPAPQPPVVISLSQDNFPPLSSPGGSSLPLSTL IDGTGVGGGETTAQKLATFHAASSAVLSAPSSSSHVYKPAVLTPPSSSTT VWKEGGKEESGVTTSAAAGAPVPNETSAAGPSTQASSSGKSPAGSAAGGA VGKTEEEGVKTTVAPAPEKATFSITSPSTSSIATSSSSSSHSILSSPRPA PAAAPAAGSPTPKGPWAAAVLRGPTLSDPHVPVRLPLRSATPASTTASSS SSSSSSSSSSSNSNSNNNNNNKNATTAAVTTSTSSSTSGAATGLDGSGGP SVAATAPSTGEGRSAIGGGSGGGGGGDEGEKKAVGNGTTAKDDSKVFADA GLTTKSGKSASVNAPLSSSSSSPRMSSTTPPSAVPIAGKGPWGKKSFVEV VRTMGGVGEGGEKGGGEK* back to topmRNA from alignment at chr2:1324842..1327234+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G04940.1 ID=NO02G04940.1|Name=NO02G04940.1|organism=Nannochloropsis oceanica|type=mRNA|length=2393bp|location=Sequence derived from alignment at chr2:1324842..1327234+ (Nannochloropsis oceanica) ATGGGCTCGAGAGCAGTGTCACAGCCAGGAACGCCGACAGCTGGAGGGGG
AGGAGGGGGAGGAGGGGGAGGAATAAGAGGATTTGAGCTGCAGCAACAGC
AGCAGTACATCCACCCGCAGCAGCAGCAACAACAACAAACAAGGAGAAAA
CAGCAACAGCCTTTCCCGCAGGAGCAGCAGCAGCAGCAGCAGAACGCCCA
GCAGCAACAACACTACCAACACCAGCACCCCTTTCAGGGGGGGCGTCCGC
AACAGCAGCAACAACAACAACTGCAGTACCATCACCTGCAGCTGCCGCAG
CAGCACCAGCAGCATCAGCAACTATATACAGCCCAATCGCAGGTGTCTTC
TCCAGGCTCGGGGAAGAAGAAGAAGGGGGGGGGAAGCGGGCAGGGTCATC
ATCATCAGCAGCAGCAGCTACCACAACCACAAGCACCTCCTCAACATCAA
CAGGTGCAGCAGCAACAAGGACAATCAAAACCAGCTCCTCCTCAACCGAG
CGGCAGCGGCGGCAAGCCTGCGACGTCAACGACAGCACCAGCCCTCCCTC
CTGGCAGCTCTGCTACCGTGGGTCTTGATCTCGCCAGCAGCAGCAGCAGC
AGCACCAATGGGAGGGCGGCCAAAGCATCCGTCACGGAAGGAGGAGGAGG
AGGATGCGAGGGAGGGGTAAAGGGCGCAGCGTCTTCCGCTGTTAGTGCCA
GTGGGGTGAGCGGCGAGGCCGGCACCGCTGCACCGAAGAAGAGCAAAAAC
AAGAAGAAGTCCCAGCAGCAACAGCAACAACAGCAGCAGGGTGGAGCACC
TGTGCCTGCCCCTCAGCCTCCTGTCGTGATCAGTCTAAGCCAGGACAATT
TTCCTCCTCTTTCCAGCCCTGGTGGTTCCTCCCTCCCTCTTTCAACTCTT
ATCGACGGCACAGGGGTAGGCGGAGGAGAAACCACGGCGCAAAAGCTCGC
TACTTTCCATGCCGCGTCCTCCGCCGTGCTTTCTGCTCCGTCGTCCTCCT
CTCATGTCTACAAGCCAGCAGTATTAACGCCACCATCATCGTCAACCACA
GTTTGGAAGGAGGGCGGGAAGGAGGAGAGCGGGGTGACAACAAGTGCTGC
CGCAGGGGCTCCAGTGCCGAATGAAACATCTGCTGCCGGGCCTTCAACTC
AAGCTTCTTCTTCTGGAAAATCACCAGCAGGATCGGCAGCAGGAGGAGCG
GTCGGCAAGACCGAGGAGGAGGGTGTCAAGACGACTGTAGCACCAGCACC
AGAAAAAGCTACCTTCAGTATTACTTCTCCCTCCACCTCCTCCATTGCCA
CGAGTAGCAGCAGCAGCTCTCACTCAATCCTTTCCTCCCCTAGACCTGCA
CCAGCAGCAGCGCCTGCTGCAGGATCCCCCACACCGAAGGGGCCGTGGGC
AGCGGCTGTCCTCAGGGGTCCCACACTAAGCGATCCTCACGTCCCTGTAC
GATTACCCCTAAGATCAGCCACTCCTGCGTCTACAACGGCCAGCAGCAGC
AGTAGCAGTAGCAGCAGCAGTAGCAGCAGCAGCAACAGCAACAGCAACAA
CAACAACAACAACAAAAACGCCACCACCGCCGCCGTTACCACCAGCACCA
GCTCCAGCACCAGCGGTGCGGCCACGGGCCTTGATGGGAGTGGAGGGCCG
TCTGTGGCGGCCACAGCACCTTCCACTGGGGAGGGTAGAAGTGCCATAGG
GGGCGGGAGTGGGGGTGGAGGTGGAGGAGATGAAGGAGAGAAAAAAGCTG
TGGGAAATGGAACTACTGCAAAGGTAATGTAGAAGGTTTTGAGGGAGGGA
AAGGAGGAAGCAGGATGGAGGGGTGAAGAGATGGAACCAGGCCATAATGA
TGTCTCGTTGTTTTAATTTATGAGTCGATGCCTTTTCCACGGCGATCGGT
GAATTTTATGTATTTGTACTGTCTGAAGGCCACACACCATCTTCCCATCC
ACCTCTTCCTCCCTCCCTTCTCTTTCCTGAGTTTGTTTTCATACTCGCTG
TATCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTTTC
TCTCTCTCACGCACACACACACACACACACACACACACACACGAACGCTT
ATACACGTATACACTCTCACATACATACCTTTCTGCTCTTTTCTCCCCCT
ACCTTATAGGACGACAGCAAAGTTTTCGCCGACGCTGGATTGACAACCAA
GTCAGGCAAATCGGCCTCTGTCAATGCCCCCTTATCCTCCTCCTCCTCCT
CTCCACGCATGTCTTCCACTACCCCTCCCTCGGCGGTGCCTATAGCCGGC
AAGGGCCCATGGGGGAAGAAGAGTTTTGTGGAGGTGGTACGAACGATGGG
AGGGGTAGGAGAGGGAGGAGAGAAGGGGGGTGGAGAAAAGTAG back to topCoding sequence (CDS) from alignment at chr2:1324842..1327234+ >NO02G04940.1 ID=NO02G04940.1|Name=NO02G04940.1|organism=Nannochloropsis oceanica|type=CDS|length=2007bp|location=Sequence derived from alignment at chr2:1324842..1327234+ (Nannochloropsis oceanica) ATGGGCTCGAGAGCAGTGTCACAGCCAGGAACGCCGACAGCTGGAGGGGG AGGAGGGGGAGGAGGGGGAGGAATAAGAGGATTTGAGCTGCAGCAACAGC AGCAGTACATCCACCCGCAGCAGCAGCAACAACAACAAACAAGGAGAAAA CAGCAACAGCCTTTCCCGCAGGAGCAGCAGCAGCAGCAGCAGAACGCCCA GCAGCAACAACACTACCAACACCAGCACCCCTTTCAGGGGGGGCGTCCGC AACAGCAGCAACAACAACAACTGCAGTACCATCACCTGCAGCTGCCGCAG CAGCACCAGCAGCATCAGCAACTATATACAGCCCAATCGCAGGTGTCTTC TCCAGGCTCGGGGAAGAAGAAGAAGGGGGGGGGAAGCGGGCAGGGTCATC ATCATCAGCAGCAGCAGCTACCACAACCACAAGCACCTCCTCAACATCAA CAGGTGCAGCAGCAACAAGGACAATCAAAACCAGCTCCTCCTCAACCGAG CGGCAGCGGCGGCAAGCCTGCGACGTCAACGACAGCACCAGCCCTCCCTC CTGGCAGCTCTGCTACCGTGGGTCTTGATCTCGCCAGCAGCAGCAGCAGC AGCACCAATGGGAGGGCGGCCAAAGCATCCGTCACGGAAGGAGGAGGAGG AGGATGCGAGGGAGGGGTAAAGGGCGCAGCGTCTTCCGCTGTTAGTGCCA GTGGGGTGAGCGGCGAGGCCGGCACCGCTGCACCGAAGAAGAGCAAAAAC AAGAAGAAGTCCCAGCAGCAACAGCAACAACAGCAGCAGGGTGGAGCACC TGTGCCTGCCCCTCAGCCTCCTGTCGTGATCAGTCTAAGCCAGGACAATT TTCCTCCTCTTTCCAGCCCTGGTGGTTCCTCCCTCCCTCTTTCAACTCTT ATCGACGGCACAGGGGTAGGCGGAGGAGAAACCACGGCGCAAAAGCTCGC TACTTTCCATGCCGCGTCCTCCGCCGTGCTTTCTGCTCCGTCGTCCTCCT CTCATGTCTACAAGCCAGCAGTATTAACGCCACCATCATCGTCAACCACA GTTTGGAAGGAGGGCGGGAAGGAGGAGAGCGGGGTGACAACAAGTGCTGC CGCAGGGGCTCCAGTGCCGAATGAAACATCTGCTGCCGGGCCTTCAACTC AAGCTTCTTCTTCTGGAAAATCACCAGCAGGATCGGCAGCAGGAGGAGCG GTCGGCAAGACCGAGGAGGAGGGTGTCAAGACGACTGTAGCACCAGCACC AGAAAAAGCTACCTTCAGTATTACTTCTCCCTCCACCTCCTCCATTGCCA CGAGTAGCAGCAGCAGCTCTCACTCAATCCTTTCCTCCCCTAGACCTGCA CCAGCAGCAGCGCCTGCTGCAGGATCCCCCACACCGAAGGGGCCGTGGGC AGCGGCTGTCCTCAGGGGTCCCACACTAAGCGATCCTCACGTCCCTGTAC GATTACCCCTAAGATCAGCCACTCCTGCGTCTACAACGGCCAGCAGCAGC AGTAGCAGTAGCAGCAGCAGTAGCAGCAGCAGCAACAGCAACAGCAACAA CAACAACAACAACAAAAACGCCACCACCGCCGCCGTTACCACCAGCACCA GCTCCAGCACCAGCGGTGCGGCCACGGGCCTTGATGGGAGTGGAGGGCCG TCTGTGGCGGCCACAGCACCTTCCACTGGGGAGGGTAGAAGTGCCATAGG GGGCGGGAGTGGGGGTGGAGGTGGAGGAGATGAAGGAGAGAAAAAAGCTG TGGGAAATGGAACTACTGCAAAGGACGACAGCAAAGTTTTCGCCGACGCT GGATTGACAACCAAGTCAGGCAAATCGGCCTCTGTCAATGCCCCCTTATC CTCCTCCTCCTCCTCTCCACGCATGTCTTCCACTACCCCTCCCTCGGCGG TGCCTATAGCCGGCAAGGGCCCATGGGGGAAGAAGAGTTTTGTGGAGGTG GTACGAACGATGGGAGGGGTAGGAGAGGGAGGAGAGAAGGGGGGTGGAGA AAAGTAG back to top
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