NO02G04940.1, NO02G04940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04940.1
Unique NameNO02G04940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2007
Alignment locationchr2:1324842..1327234 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1324842..1327234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G04940.1 vs.
Match: EWM30164.1 (hypothetical protein Naga_100096g1 [Nannochloropsis gaditana])

HSP 1 Score: 90.1 bits (222), Expect = 2.800e-14
Identity = 238/694 (34.29%), Postives = 310/694 (44.67%), Query Frame = 0
Query:    4 RAVSQPGTPTAGGGGGGGGGGIRGFELQQQQQYIHPQQQQQQQTRRKQQQPFPQEQQQQQQNAQQQQHYQHQHPFQGGRPQQQQQQQLQYHHLQLPQQHQQHQQ--LYTAQSQVSSPGSG--KKKKGGGSGQGHHHQQQQLPQPQAPPQHQQVQQQQGQSKPAPPQPSGSGGK----PATSTTAPALPPGSSATVGLDLASSSSSSTNGRAAKASVTEGGGGGCEGGVKGAASSAVSASGVSGEAGTAAPKKSKNKKKSQQQQQQQQQGGAPVPAPQPPVVISLSQDNFPPLSS---PGG-SSLPLSTLIDGTGVGGGETTAQKLATFHAASSAVLSAPSSSSHVYKPAVLTPPS-----SSTTVWKEGGKEESGVTTSAAAGAPVPNETSAAGPSTQASSSGKSPAGSAAGGA---------VGKTEEEGVKTTVAPAPEKATFSITSPSTSSIATSSSSSSHSILSSPRPAPAAA--PAAGSPTPKGPWAAAVLRGPTLSDPHVPVRLPLRSATPASTTASSSSSSSSSSSSSSNSNSNNNNNNKNATTAAVTTSTSSSTSGAATGLDGSGGPSVAATAPSTGEGRSAIGGGSGGGGGGDEGEKKAVGNGTTAKDDSKVFADAGLTTKSGKSASVNAPLSSSSSSPRMSSTTPPSAVPIAGKGPWGKKSFVEVVR-TMGGVGEGGEKGGGEK 669
            RA SQP +PT GGGG       RGFE  Q      P Q    Q RRKQ    PQ QQ   Q+AQ     Q    + GGR QQQQ  QL  H      QHQ H Q  ++        PG+G  KKKKGGG      H QQ   +       Q      G + PA     G GG     P++ST AP   P    +V +          NGR   A+  EGGG G   G+ G  +         GE  TAAP  SK  K  ++ QQQQQQG AP      PV ISL+QDNFPPLS+   PG       +    G G+G  +          A+    +    + SH     + T PS     +  +      K  S V     A A    +    G   +A  S   P   A              G   E+   +T       ++ S TS + +S +T++S+ + S  S+P   P++A  P A  P PKGPWAAAVLRG    DP VPVRLPLR+A PAS +A++S  S+S+++SS  SN++                 S++ +G+   + G GGP  + +     E RSA             G KK  G+G      +K  +   L   SGK+A    P  +S ++   SS++P SA P+A KGPWG+KSFVEVVR T GG   GG  G  EK
Sbjct:  138 RATSQPTSPTGGGGG-------RGFEGGQL-----PSQSAPAQARRKQ----PQSQQPHFQHAQAPGGQQ----YHGGRMQQQQLPQLLSH------QHQMHAQESMFGGGEMGPLPGTGLGKKKKGGGH---QSHPQQGAQRGAGGTPGQSPHPAHGTADPAH-LGGGRGGSMPAAPSSSTAAPLTGPEGKKSVVI----------NGRRGAAN-GEGGGSGAGAGMGGNGTGPTG-----GEGSTAAPVSSKKGKNKKKGQQQQQQGAAPGVVTPAPVEISLTQDNFPPLSNLPAPGALGEAGGNEKARGEGLGKEDKLPHAAPRPVASHMPTVGGDRAVSHANPSTLPTRPSPMVEKNDGSAGLPRAKGGSDVAPMVPANALESLQDKEGGLGKKAGESDTKPGDPACAAKDASLPPPTLTGSLVEKPPTSTSTSTTSSSSSSPTSSTATSTSTNTSTPALSTSSAPPSVPSSATTPTAPPPAPKGPWAAAVLRGAMHIDPSVPVRLPLRTAAPASPSAAASGGSASTAASSRASNND-----------------SATGAGSNVSVGGEGGPPSSMSTAIGEENRSA----------ASVGRKKMEGSGPERLGSNKPTSVEALAESSGKNAVPPIPGGTSPAATASSSSSPSSA-PVA-KGPWGRKSFVEVVRLTGGGQASGGGDGEEEK 756          
The following BLAST results are available for this feature:
BLAST of NO02G04940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30164.12.800e-1434.29hypothetical protein Naga_100096g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04940NO02G04940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04940.1NO02G04940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04940.1.cds1NO02G04940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04940.1.cds2NO02G04940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04940.1 ID=NO02G04940.1|Name=NO02G04940.1|organism=Nannochloropsis oceanica|type=mRNA|length=2007bp
ATGGGCTCGAGAGCAGTGTCACAGCCAGGAACGCCGACAGCTGGAGGGGG
AGGAGGGGGAGGAGGGGGAGGAATAAGAGGATTTGAGCTGCAGCAACAGC
AGCAGTACATCCACCCGCAGCAGCAGCAACAACAACAAACAAGGAGAAAA
CAGCAACAGCCTTTCCCGCAGGAGCAGCAGCAGCAGCAGCAGAACGCCCA
GCAGCAACAACACTACCAACACCAGCACCCCTTTCAGGGGGGGCGTCCGC
AACAGCAGCAACAACAACAACTGCAGTACCATCACCTGCAGCTGCCGCAG
CAGCACCAGCAGCATCAGCAACTATATACAGCCCAATCGCAGGTGTCTTC
TCCAGGCTCGGGGAAGAAGAAGAAGGGGGGGGGAAGCGGGCAGGGTCATC
ATCATCAGCAGCAGCAGCTACCACAACCACAAGCACCTCCTCAACATCAA
CAGGTGCAGCAGCAACAAGGACAATCAAAACCAGCTCCTCCTCAACCGAG
CGGCAGCGGCGGCAAGCCTGCGACGTCAACGACAGCACCAGCCCTCCCTC
CTGGCAGCTCTGCTACCGTGGGTCTTGATCTCGCCAGCAGCAGCAGCAGC
AGCACCAATGGGAGGGCGGCCAAAGCATCCGTCACGGAAGGAGGAGGAGG
AGGATGCGAGGGAGGGGTAAAGGGCGCAGCGTCTTCCGCTGTTAGTGCCA
GTGGGGTGAGCGGCGAGGCCGGCACCGCTGCACCGAAGAAGAGCAAAAAC
AAGAAGAAGTCCCAGCAGCAACAGCAACAACAGCAGCAGGGTGGAGCACC
TGTGCCTGCCCCTCAGCCTCCTGTCGTGATCAGTCTAAGCCAGGACAATT
TTCCTCCTCTTTCCAGCCCTGGTGGTTCCTCCCTCCCTCTTTCAACTCTT
ATCGACGGCACAGGGGTAGGCGGAGGAGAAACCACGGCGCAAAAGCTCGC
TACTTTCCATGCCGCGTCCTCCGCCGTGCTTTCTGCTCCGTCGTCCTCCT
CTCATGTCTACAAGCCAGCAGTATTAACGCCACCATCATCGTCAACCACA
GTTTGGAAGGAGGGCGGGAAGGAGGAGAGCGGGGTGACAACAAGTGCTGC
CGCAGGGGCTCCAGTGCCGAATGAAACATCTGCTGCCGGGCCTTCAACTC
AAGCTTCTTCTTCTGGAAAATCACCAGCAGGATCGGCAGCAGGAGGAGCG
GTCGGCAAGACCGAGGAGGAGGGTGTCAAGACGACTGTAGCACCAGCACC
AGAAAAAGCTACCTTCAGTATTACTTCTCCCTCCACCTCCTCCATTGCCA
CGAGTAGCAGCAGCAGCTCTCACTCAATCCTTTCCTCCCCTAGACCTGCA
CCAGCAGCAGCGCCTGCTGCAGGATCCCCCACACCGAAGGGGCCGTGGGC
AGCGGCTGTCCTCAGGGGTCCCACACTAAGCGATCCTCACGTCCCTGTAC
GATTACCCCTAAGATCAGCCACTCCTGCGTCTACAACGGCCAGCAGCAGC
AGTAGCAGTAGCAGCAGCAGTAGCAGCAGCAGCAACAGCAACAGCAACAA
CAACAACAACAACAAAAACGCCACCACCGCCGCCGTTACCACCAGCACCA
GCTCCAGCACCAGCGGTGCGGCCACGGGCCTTGATGGGAGTGGAGGGCCG
TCTGTGGCGGCCACAGCACCTTCCACTGGGGAGGGTAGAAGTGCCATAGG
GGGCGGGAGTGGGGGTGGAGGTGGAGGAGATGAAGGAGAGAAAAAAGCTG
TGGGAAATGGAACTACTGCAAAGGACGACAGCAAAGTTTTCGCCGACGCT
GGATTGACAACCAAGTCAGGCAAATCGGCCTCTGTCAATGCCCCCTTATC
CTCCTCCTCCTCCTCTCCACGCATGTCTTCCACTACCCCTCCCTCGGCGG
TGCCTATAGCCGGCAAGGGCCCATGGGGGAAGAAGAGTTTTGTGGAGGTG
GTACGAACGATGGGAGGGGTAGGAGAGGGAGGAGAGAAGGGGGGTGGAGA
AAAGTAG
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protein sequence of NO02G04940.1

>NO02G04940.1-protein ID=NO02G04940.1-protein|Name=NO02G04940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=669bp
MGSRAVSQPGTPTAGGGGGGGGGGIRGFELQQQQQYIHPQQQQQQQTRRK
QQQPFPQEQQQQQQNAQQQQHYQHQHPFQGGRPQQQQQQQLQYHHLQLPQ
QHQQHQQLYTAQSQVSSPGSGKKKKGGGSGQGHHHQQQQLPQPQAPPQHQ
QVQQQQGQSKPAPPQPSGSGGKPATSTTAPALPPGSSATVGLDLASSSSS
STNGRAAKASVTEGGGGGCEGGVKGAASSAVSASGVSGEAGTAAPKKSKN
KKKSQQQQQQQQQGGAPVPAPQPPVVISLSQDNFPPLSSPGGSSLPLSTL
IDGTGVGGGETTAQKLATFHAASSAVLSAPSSSSHVYKPAVLTPPSSSTT
VWKEGGKEESGVTTSAAAGAPVPNETSAAGPSTQASSSGKSPAGSAAGGA
VGKTEEEGVKTTVAPAPEKATFSITSPSTSSIATSSSSSSHSILSSPRPA
PAAAPAAGSPTPKGPWAAAVLRGPTLSDPHVPVRLPLRSATPASTTASSS
SSSSSSSSSSSNSNSNNNNNNKNATTAAVTTSTSSSTSGAATGLDGSGGP
SVAATAPSTGEGRSAIGGGSGGGGGGDEGEKKAVGNGTTAKDDSKVFADA
GLTTKSGKSASVNAPLSSSSSSPRMSSTTPPSAVPIAGKGPWGKKSFVEV
VRTMGGVGEGGEKGGGEK*
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mRNA from alignment at chr2:1324842..1327234+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04940.1 ID=NO02G04940.1|Name=NO02G04940.1|organism=Nannochloropsis oceanica|type=mRNA|length=2393bp|location=Sequence derived from alignment at chr2:1324842..1327234+ (Nannochloropsis oceanica)
ATGGGCTCGAGAGCAGTGTCACAGCCAGGAACGCCGACAGCTGGAGGGGG AGGAGGGGGAGGAGGGGGAGGAATAAGAGGATTTGAGCTGCAGCAACAGC AGCAGTACATCCACCCGCAGCAGCAGCAACAACAACAAACAAGGAGAAAA CAGCAACAGCCTTTCCCGCAGGAGCAGCAGCAGCAGCAGCAGAACGCCCA GCAGCAACAACACTACCAACACCAGCACCCCTTTCAGGGGGGGCGTCCGC AACAGCAGCAACAACAACAACTGCAGTACCATCACCTGCAGCTGCCGCAG CAGCACCAGCAGCATCAGCAACTATATACAGCCCAATCGCAGGTGTCTTC TCCAGGCTCGGGGAAGAAGAAGAAGGGGGGGGGAAGCGGGCAGGGTCATC ATCATCAGCAGCAGCAGCTACCACAACCACAAGCACCTCCTCAACATCAA CAGGTGCAGCAGCAACAAGGACAATCAAAACCAGCTCCTCCTCAACCGAG CGGCAGCGGCGGCAAGCCTGCGACGTCAACGACAGCACCAGCCCTCCCTC CTGGCAGCTCTGCTACCGTGGGTCTTGATCTCGCCAGCAGCAGCAGCAGC AGCACCAATGGGAGGGCGGCCAAAGCATCCGTCACGGAAGGAGGAGGAGG AGGATGCGAGGGAGGGGTAAAGGGCGCAGCGTCTTCCGCTGTTAGTGCCA GTGGGGTGAGCGGCGAGGCCGGCACCGCTGCACCGAAGAAGAGCAAAAAC AAGAAGAAGTCCCAGCAGCAACAGCAACAACAGCAGCAGGGTGGAGCACC TGTGCCTGCCCCTCAGCCTCCTGTCGTGATCAGTCTAAGCCAGGACAATT TTCCTCCTCTTTCCAGCCCTGGTGGTTCCTCCCTCCCTCTTTCAACTCTT ATCGACGGCACAGGGGTAGGCGGAGGAGAAACCACGGCGCAAAAGCTCGC TACTTTCCATGCCGCGTCCTCCGCCGTGCTTTCTGCTCCGTCGTCCTCCT CTCATGTCTACAAGCCAGCAGTATTAACGCCACCATCATCGTCAACCACA GTTTGGAAGGAGGGCGGGAAGGAGGAGAGCGGGGTGACAACAAGTGCTGC CGCAGGGGCTCCAGTGCCGAATGAAACATCTGCTGCCGGGCCTTCAACTC AAGCTTCTTCTTCTGGAAAATCACCAGCAGGATCGGCAGCAGGAGGAGCG GTCGGCAAGACCGAGGAGGAGGGTGTCAAGACGACTGTAGCACCAGCACC AGAAAAAGCTACCTTCAGTATTACTTCTCCCTCCACCTCCTCCATTGCCA CGAGTAGCAGCAGCAGCTCTCACTCAATCCTTTCCTCCCCTAGACCTGCA CCAGCAGCAGCGCCTGCTGCAGGATCCCCCACACCGAAGGGGCCGTGGGC AGCGGCTGTCCTCAGGGGTCCCACACTAAGCGATCCTCACGTCCCTGTAC GATTACCCCTAAGATCAGCCACTCCTGCGTCTACAACGGCCAGCAGCAGC AGTAGCAGTAGCAGCAGCAGTAGCAGCAGCAGCAACAGCAACAGCAACAA CAACAACAACAACAAAAACGCCACCACCGCCGCCGTTACCACCAGCACCA GCTCCAGCACCAGCGGTGCGGCCACGGGCCTTGATGGGAGTGGAGGGCCG TCTGTGGCGGCCACAGCACCTTCCACTGGGGAGGGTAGAAGTGCCATAGG GGGCGGGAGTGGGGGTGGAGGTGGAGGAGATGAAGGAGAGAAAAAAGCTG TGGGAAATGGAACTACTGCAAAGGTAATGTAGAAGGTTTTGAGGGAGGGA AAGGAGGAAGCAGGATGGAGGGGTGAAGAGATGGAACCAGGCCATAATGA TGTCTCGTTGTTTTAATTTATGAGTCGATGCCTTTTCCACGGCGATCGGT GAATTTTATGTATTTGTACTGTCTGAAGGCCACACACCATCTTCCCATCC ACCTCTTCCTCCCTCCCTTCTCTTTCCTGAGTTTGTTTTCATACTCGCTG TATCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTTTC TCTCTCTCACGCACACACACACACACACACACACACACACACGAACGCTT ATACACGTATACACTCTCACATACATACCTTTCTGCTCTTTTCTCCCCCT ACCTTATAGGACGACAGCAAAGTTTTCGCCGACGCTGGATTGACAACCAA GTCAGGCAAATCGGCCTCTGTCAATGCCCCCTTATCCTCCTCCTCCTCCT CTCCACGCATGTCTTCCACTACCCCTCCCTCGGCGGTGCCTATAGCCGGC AAGGGCCCATGGGGGAAGAAGAGTTTTGTGGAGGTGGTACGAACGATGGG AGGGGTAGGAGAGGGAGGAGAGAAGGGGGGTGGAGAAAAGTAG
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Coding sequence (CDS) from alignment at chr2:1324842..1327234+

>NO02G04940.1 ID=NO02G04940.1|Name=NO02G04940.1|organism=Nannochloropsis oceanica|type=CDS|length=2007bp|location=Sequence derived from alignment at chr2:1324842..1327234+ (Nannochloropsis oceanica)
ATGGGCTCGAGAGCAGTGTCACAGCCAGGAACGCCGACAGCTGGAGGGGG
AGGAGGGGGAGGAGGGGGAGGAATAAGAGGATTTGAGCTGCAGCAACAGC
AGCAGTACATCCACCCGCAGCAGCAGCAACAACAACAAACAAGGAGAAAA
CAGCAACAGCCTTTCCCGCAGGAGCAGCAGCAGCAGCAGCAGAACGCCCA
GCAGCAACAACACTACCAACACCAGCACCCCTTTCAGGGGGGGCGTCCGC
AACAGCAGCAACAACAACAACTGCAGTACCATCACCTGCAGCTGCCGCAG
CAGCACCAGCAGCATCAGCAACTATATACAGCCCAATCGCAGGTGTCTTC
TCCAGGCTCGGGGAAGAAGAAGAAGGGGGGGGGAAGCGGGCAGGGTCATC
ATCATCAGCAGCAGCAGCTACCACAACCACAAGCACCTCCTCAACATCAA
CAGGTGCAGCAGCAACAAGGACAATCAAAACCAGCTCCTCCTCAACCGAG
CGGCAGCGGCGGCAAGCCTGCGACGTCAACGACAGCACCAGCCCTCCCTC
CTGGCAGCTCTGCTACCGTGGGTCTTGATCTCGCCAGCAGCAGCAGCAGC
AGCACCAATGGGAGGGCGGCCAAAGCATCCGTCACGGAAGGAGGAGGAGG
AGGATGCGAGGGAGGGGTAAAGGGCGCAGCGTCTTCCGCTGTTAGTGCCA
GTGGGGTGAGCGGCGAGGCCGGCACCGCTGCACCGAAGAAGAGCAAAAAC
AAGAAGAAGTCCCAGCAGCAACAGCAACAACAGCAGCAGGGTGGAGCACC
TGTGCCTGCCCCTCAGCCTCCTGTCGTGATCAGTCTAAGCCAGGACAATT
TTCCTCCTCTTTCCAGCCCTGGTGGTTCCTCCCTCCCTCTTTCAACTCTT
ATCGACGGCACAGGGGTAGGCGGAGGAGAAACCACGGCGCAAAAGCTCGC
TACTTTCCATGCCGCGTCCTCCGCCGTGCTTTCTGCTCCGTCGTCCTCCT
CTCATGTCTACAAGCCAGCAGTATTAACGCCACCATCATCGTCAACCACA
GTTTGGAAGGAGGGCGGGAAGGAGGAGAGCGGGGTGACAACAAGTGCTGC
CGCAGGGGCTCCAGTGCCGAATGAAACATCTGCTGCCGGGCCTTCAACTC
AAGCTTCTTCTTCTGGAAAATCACCAGCAGGATCGGCAGCAGGAGGAGCG
GTCGGCAAGACCGAGGAGGAGGGTGTCAAGACGACTGTAGCACCAGCACC
AGAAAAAGCTACCTTCAGTATTACTTCTCCCTCCACCTCCTCCATTGCCA
CGAGTAGCAGCAGCAGCTCTCACTCAATCCTTTCCTCCCCTAGACCTGCA
CCAGCAGCAGCGCCTGCTGCAGGATCCCCCACACCGAAGGGGCCGTGGGC
AGCGGCTGTCCTCAGGGGTCCCACACTAAGCGATCCTCACGTCCCTGTAC
GATTACCCCTAAGATCAGCCACTCCTGCGTCTACAACGGCCAGCAGCAGC
AGTAGCAGTAGCAGCAGCAGTAGCAGCAGCAGCAACAGCAACAGCAACAA
CAACAACAACAACAAAAACGCCACCACCGCCGCCGTTACCACCAGCACCA
GCTCCAGCACCAGCGGTGCGGCCACGGGCCTTGATGGGAGTGGAGGGCCG
TCTGTGGCGGCCACAGCACCTTCCACTGGGGAGGGTAGAAGTGCCATAGG
GGGCGGGAGTGGGGGTGGAGGTGGAGGAGATGAAGGAGAGAAAAAAGCTG
TGGGAAATGGAACTACTGCAAAGGACGACAGCAAAGTTTTCGCCGACGCT
GGATTGACAACCAAGTCAGGCAAATCGGCCTCTGTCAATGCCCCCTTATC
CTCCTCCTCCTCCTCTCCACGCATGTCTTCCACTACCCCTCCCTCGGCGG
TGCCTATAGCCGGCAAGGGCCCATGGGGGAAGAAGAGTTTTGTGGAGGTG
GTACGAACGATGGGAGGGGTAGGAGAGGGAGGAGAGAAGGGGGGTGGAGA
AAAGTAG
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Synonyms
Publications