NO02G04910.1, NO02G04910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04910.1
Unique NameNO02G04910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1323
Alignment locationchr2:1321288..1322610 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1321288..1322610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04910.1 vs.
Match: XP_005853462.1 (hypothetical protein NGA_0456500, partial [Nannochloropsis gaditana CCMP526]; EKU22899.1 hypothetical protein NGA_0456500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 570.5 bits (1469), Expect = 4.600e-159
Identity = 280/356 (78.65%), Postives = 322/356 (90.45%), Query Frame = 0 
Query:   45 AHQRILVIGATGRVGGSTVRALRKLPGLGTSSLISVGGRSSTKFEQAKQRWISLGEKKYKKDTYEDVGFVALDHEDRVGLLAALANHRPDLIIHTAGPFQRRQTPEVLKAALLLKVPYVDVCDDINLSQLAKGYDGQARAAGVPCLISTGVWPGVSSLMALDVAEALGGATQTNKIDFDFFTAGSGGAGTTILSATFLILSEQVLAYINGRPHYFDAASDFRKVDFGEGVGDRNVFRMNLLEAYTCHRVLGIPNVATFFGTAPDGWNYLLKGMATLPKKVLQDRAGMQALAVISEPLVRLVDKLVGSTNAMLVTGVSKDGKRTASALYAHEDLETCVGEGIAAFAAQVLEKKVAPG 401
            A +R+LVIGATGRVGGSTVRALR+LPG GT +LISVGGR++ KF++AK+RW+SL  KK   DT++DV FV +DHEDR+GLLAALA+HRPDLIIHTAGPFQRR  PEVLKAAL+LKVPYVDVCDDI+L+QLAKGYDG+AR   VPCLISTGVWPG+SSLMA+DVAEA+GG   T+KI+F+FFT+GSGGAGTTILSATFLILSE+VLAY+NGRPHY+DAASDFRK DFG+G+G R VFRMNLLEA++CHRVLG+PNV+TFFGTAP+GWNYLLKGMA LP K+LQDRA MQALAV+SEPLVRLVD LVG+ NAM VT  SK G  +A+ALYAHEDLETCVGEGIAAFAAQVL+ KVAPG
Sbjct:   13 APKRVLVIGATGRVGGSTVRALRRLPG-GTKNLISVGGRNAAKFKKAKERWMSLESKKNGADTFDDVEFVPMDHEDRIGLLAALASHRPDLIIHTAGPFQRRMAPEVLKAALILKVPYVDVCDDIHLAQLAKGYDGEARKGNVPCLISTGVWPGISSLMAVDVAEAVGGIEATDKIEFEFFTSGSGGAGTTILSATFLILSEKVLAYVNGRPHYYDAASDFRKADFGKGIGLRQVFRMNLLEAFSCHRVLGVPNVSTFFGTAPNGWNYLLKGMAMLPAKILQDRALMQALAVVSEPLVRLVDTLVGTANAMRVTATSKGGTESATALYAHEDLETCVGEGIAAFAAQVLDGKVAPG 367
The following BLAST results are available for this feature:
BLAST of NO02G04910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853462.14.600e-15978.65hypothetical protein NGA_0456500, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04910NO02G04910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04910.1NO02G04910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04910.1.cds1NO02G04910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04910.1 ID=NO02G04910.1|Name=NO02G04910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1323bp
ATGTCGCACAAACGCTACAGTCCTGCCCTCCCTACCCTCCTACCCTGTCT
ACTCCTCCTCGTGCAGCTTTTGCTCGTTCCATTTGCTGACGCATTTAATG
TGCCAACACCTTCCCCTCTCCTTAATTCCTCTGCGCACCAACGAATCCTC
GTTATTGGTGCCACGGGTCGCGTTGGCGGGTCCACCGTCCGCGCCCTACG
AAAGCTCCCTGGTTTGGGCACGAGCAGTCTCATTAGTGTGGGCGGACGGA
GCAGCACCAAGTTTGAACAAGCCAAACAACGATGGATCAGCCTCGGGGAA
AAAAAATATAAGAAGGACACATACGAAGATGTGGGCTTTGTGGCTCTGGA
CCACGAGGACCGAGTAGGGTTACTCGCAGCCCTGGCCAATCATCGGCCCG
ACCTCATCATCCATACAGCTGGGCCATTCCAACGACGCCAAACTCCTGAA
GTCCTCAAAGCAGCTCTTTTGCTCAAAGTGCCTTATGTAGATGTCTGCGA
CGATATCAATCTGTCGCAACTCGCCAAAGGCTATGACGGCCAAGCACGGG
CAGCAGGTGTACCCTGCCTTATTTCCACTGGAGTCTGGCCAGGCGTGTCA
AGCTTGATGGCGCTCGATGTGGCAGAAGCCTTGGGCGGAGCGACGCAGAC
AAATAAGATCGATTTTGACTTCTTTACCGCTGGTAGCGGTGGGGCGGGGA
CGACTATCTTAAGCGCGACGTTTCTGATTCTCTCGGAACAGGTCCTGGCG
TACATTAATGGCCGGCCGCATTACTTTGACGCGGCTTCTGACTTCCGCAA
GGTGGACTTTGGGGAGGGCGTGGGGGATCGGAACGTGTTTCGGATGAATC
TTCTAGAGGCATACACGTGTCATCGTGTCCTGGGGATACCGAACGTGGCG
ACGTTTTTTGGCACCGCGCCGGATGGGTGGAATTACTTGTTGAAAGGTAT
GGCGACTCTTCCGAAGAAGGTTCTGCAAGATCGGGCGGGGATGCAGGCCT
TGGCGGTGATCAGCGAGCCGCTGGTCAGACTTGTTGACAAGCTAGTGGGG
TCAACAAATGCCATGCTCGTGACAGGGGTGAGCAAGGATGGAAAACGTAC
TGCATCTGCGTTGTACGCGCACGAAGATTTGGAAACTTGTGTGGGAGAGG
GAATCGCCGCCTTTGCAGCACAAGTTCTAGAGAAGAAGGTAGCACCAGGC
GTGCACTATCCAGAAGAGGCGTTTTCGTCGCCGGAAGGTAGAGAGGACGT
CTTTCGGTTGGCCACGAAGGGGTGTTTTGCCTGGCGACGGCCGCCGGGGG
TGGGGTTGCGGGTGGGAGAATAA
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protein sequence of NO02G04910.1

>NO02G04910.1-protein ID=NO02G04910.1-protein|Name=NO02G04910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp
MSHKRYSPALPTLLPCLLLLVQLLLVPFADAFNVPTPSPLLNSSAHQRIL
VIGATGRVGGSTVRALRKLPGLGTSSLISVGGRSSTKFEQAKQRWISLGE
KKYKKDTYEDVGFVALDHEDRVGLLAALANHRPDLIIHTAGPFQRRQTPE
VLKAALLLKVPYVDVCDDINLSQLAKGYDGQARAAGVPCLISTGVWPGVS
SLMALDVAEALGGATQTNKIDFDFFTAGSGGAGTTILSATFLILSEQVLA
YINGRPHYFDAASDFRKVDFGEGVGDRNVFRMNLLEAYTCHRVLGIPNVA
TFFGTAPDGWNYLLKGMATLPKKVLQDRAGMQALAVISEPLVRLVDKLVG
STNAMLVTGVSKDGKRTASALYAHEDLETCVGEGIAAFAAQVLEKKVAPG
VHYPEEAFSSPEGREDVFRLATKGCFAWRRPPGVGLRVGE*
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mRNA from alignment at chr2:1321288..1322610+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04910.1 ID=NO02G04910.1|Name=NO02G04910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1323bp|location=Sequence derived from alignment at chr2:1321288..1322610+ (Nannochloropsis oceanica)
ATGTCGCACAAACGCTACAGTCCTGCCCTCCCTACCCTCCTACCCTGTCT
ACTCCTCCTCGTGCAGCTTTTGCTCGTTCCATTTGCTGACGCATTTAATG
TGCCAACACCTTCCCCTCTCCTTAATTCCTCTGCGCACCAACGAATCCTC
GTTATTGGTGCCACGGGTCGCGTTGGCGGGTCCACCGTCCGCGCCCTACG
AAAGCTCCCTGGTTTGGGCACGAGCAGTCTCATTAGTGTGGGCGGACGGA
GCAGCACCAAGTTTGAACAAGCCAAACAACGATGGATCAGCCTCGGGGAA
AAAAAATATAAGAAGGACACATACGAAGATGTGGGCTTTGTGGCTCTGGA
CCACGAGGACCGAGTAGGGTTACTCGCAGCCCTGGCCAATCATCGGCCCG
ACCTCATCATCCATACAGCTGGGCCATTCCAACGACGCCAAACTCCTGAA
GTCCTCAAAGCAGCTCTTTTGCTCAAAGTGCCTTATGTAGATGTCTGCGA
CGATATCAATCTGTCGCAACTCGCCAAAGGCTATGACGGCCAAGCACGGG
CAGCAGGTGTACCCTGCCTTATTTCCACTGGAGTCTGGCCAGGCGTGTCA
AGCTTGATGGCGCTCGATGTGGCAGAAGCCTTGGGCGGAGCGACGCAGAC
AAATAAGATCGATTTTGACTTCTTTACCGCTGGTAGCGGTGGGGCGGGGA
CGACTATCTTAAGCGCGACGTTTCTGATTCTCTCGGAACAGGTCCTGGCG
TACATTAATGGCCGGCCGCATTACTTTGACGCGGCTTCTGACTTCCGCAA
GGTGGACTTTGGGGAGGGCGTGGGGGATCGGAACGTGTTTCGGATGAATC
TTCTAGAGGCATACACGTGTCATCGTGTCCTGGGGATACCGAACGTGGCG
ACGTTTTTTGGCACCGCGCCGGATGGGTGGAATTACTTGTTGAAAGGTAT
GGCGACTCTTCCGAAGAAGGTTCTGCAAGATCGGGCGGGGATGCAGGCCT
TGGCGGTGATCAGCGAGCCGCTGGTCAGACTTGTTGACAAGCTAGTGGGG
TCAACAAATGCCATGCTCGTGACAGGGGTGAGCAAGGATGGAAAACGTAC
TGCATCTGCGTTGTACGCGCACGAAGATTTGGAAACTTGTGTGGGAGAGG
GAATCGCCGCCTTTGCAGCACAAGTTCTAGAGAAGAAGGTAGCACCAGGC
GTGCACTATCCAGAAGAGGCGTTTTCGTCGCCGGAAGGTAGAGAGGACGT
CTTTCGGTTGGCCACGAAGGGGTGTTTTGCCTGGCGACGGCCGCCGGGGG
TGGGGTTGCGGGTGGGAGAATAA
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Coding sequence (CDS) from alignment at chr2:1321288..1322610+

>NO02G04910.1 ID=NO02G04910.1|Name=NO02G04910.1|organism=Nannochloropsis oceanica|type=CDS|length=1323bp|location=Sequence derived from alignment at chr2:1321288..1322610+ (Nannochloropsis oceanica)
ATGTCGCACAAACGCTACAGTCCTGCCCTCCCTACCCTCCTACCCTGTCT
ACTCCTCCTCGTGCAGCTTTTGCTCGTTCCATTTGCTGACGCATTTAATG
TGCCAACACCTTCCCCTCTCCTTAATTCCTCTGCGCACCAACGAATCCTC
GTTATTGGTGCCACGGGTCGCGTTGGCGGGTCCACCGTCCGCGCCCTACG
AAAGCTCCCTGGTTTGGGCACGAGCAGTCTCATTAGTGTGGGCGGACGGA
GCAGCACCAAGTTTGAACAAGCCAAACAACGATGGATCAGCCTCGGGGAA
AAAAAATATAAGAAGGACACATACGAAGATGTGGGCTTTGTGGCTCTGGA
CCACGAGGACCGAGTAGGGTTACTCGCAGCCCTGGCCAATCATCGGCCCG
ACCTCATCATCCATACAGCTGGGCCATTCCAACGACGCCAAACTCCTGAA
GTCCTCAAAGCAGCTCTTTTGCTCAAAGTGCCTTATGTAGATGTCTGCGA
CGATATCAATCTGTCGCAACTCGCCAAAGGCTATGACGGCCAAGCACGGG
CAGCAGGTGTACCCTGCCTTATTTCCACTGGAGTCTGGCCAGGCGTGTCA
AGCTTGATGGCGCTCGATGTGGCAGAAGCCTTGGGCGGAGCGACGCAGAC
AAATAAGATCGATTTTGACTTCTTTACCGCTGGTAGCGGTGGGGCGGGGA
CGACTATCTTAAGCGCGACGTTTCTGATTCTCTCGGAACAGGTCCTGGCG
TACATTAATGGCCGGCCGCATTACTTTGACGCGGCTTCTGACTTCCGCAA
GGTGGACTTTGGGGAGGGCGTGGGGGATCGGAACGTGTTTCGGATGAATC
TTCTAGAGGCATACACGTGTCATCGTGTCCTGGGGATACCGAACGTGGCG
ACGTTTTTTGGCACCGCGCCGGATGGGTGGAATTACTTGTTGAAAGGTAT
GGCGACTCTTCCGAAGAAGGTTCTGCAAGATCGGGCGGGGATGCAGGCCT
TGGCGGTGATCAGCGAGCCGCTGGTCAGACTTGTTGACAAGCTAGTGGGG
TCAACAAATGCCATGCTCGTGACAGGGGTGAGCAAGGATGGAAAACGTAC
TGCATCTGCGTTGTACGCGCACGAAGATTTGGAAACTTGTGTGGGAGAGG
GAATCGCCGCCTTTGCAGCACAAGTTCTAGAGAAGAAGGTAGCACCAGGC
GTGCACTATCCAGAAGAGGCGTTTTCGTCGCCGGAAGGTAGAGAGGACGT
CTTTCGGTTGGCCACGAAGGGGTGTTTTGCCTGGCGACGGCCGCCGGGGG
TGGGGTTGCGGGTGGGAGAATAA
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Synonyms
Publications