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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:1312035..1314779 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G04860.4 vs.
Match: XP_005853461.1 (hypothetical protein NGA_0456400, partial [Nannochloropsis gaditana CCMP526]; EKU22898.1 hypothetical protein NGA_0456400, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 293.1 bits (749), Expect = 1.200e-75 Identity = 155/243 (63.79%), Postives = 184/243 (75.72%), Query Frame = 0
Query: 94 SSPALSRPHTFRQAIETPVPSPSSSSSTSPSITPILRDTFDCTGFFCPFRTFGVEALVPSSSFSSSSFSSSPPSSAAKPLLLYLPGLDGSGLTAFVQYPALAAEFEVRCLTMPNTDRSTFMDLVHLVRTELRSFPHRQVFLMGESFGGLLALGTALERINRPDARESTTEIKGVVLVNPATSYSRTIWAKFGQAITKLPEPFYGLSLLPIGLLLVDAGQIQSVIKDAFGRLREISSVSSLSSP 337
+SP+ S P + P+ + S+ +TP+LR+TFD TGFFCPFRTFGV+AL P+SS S KPLLLYLPGLDGSGLTAFVQYP+LA FEVRC+TMP TDRS+F+DL+HLVRTE+RSFP R+VF+MGESFGGLLALGT LER RPD R+ T +I+GVVLVNPATS+SRTIW K G ITKLP+PFY LSLLPIGLLLVD GQI+ +IKDAF RL+E + S +P
Sbjct: 476 TSPSASSPP------QPQCPTSYAESAAPTPLTPVLRETFDRTGFFCPFRTFGVQALAPASSPS-------------KPLLLYLPGLDGSGLTAFVQYPSLAEAFEVRCMTMPTTDRSSFLDLIHLVRTEIRSFPGRRVFVMGESFGGLLALGTVLERTKRPDVRD-TADIQGVVLVNPATSFSRTIWGKVGPLITKLPQPFYSLSLLPIGLLLVDGGQIKGLIKDAFVRLQEAAPTPSGRAP 698
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G04860.4 ID=NO02G04860.4|Name=NO02G04860.4|organism=Nannochloropsis oceanica|type=mRNA|length=2623bp
AATTTGAATGTTTCGGTTCTGCTTTAAAAACAACAACCGTAAATTATCTA
GATGCATTTAGAAAAAAACAAAAAAACACGTCCGTACAAACCGAGCTGAG
GGTACCCTCCCGTCTCGTTCTGCATATATGTCTGATTCCCTTGCCGTCCA
GAGCGTCCACATCACATACCCACATACAATAACACGCACGTGGTCATGGC
AACCCCACTTGTGAACTTCTCATGCAGACGGCTTAGTTGCTGTTCTGAGG
TTGTACTTCCCAATTCGTCACTCCGAAGGAAGCTCTCGCGGTCTTCGACC
ATGTCTCATCCGCTCACTGTTTCCACACCTCTCTATGCCACAGCCATGTA
CGTTCCAAGGTACACACAACTACGGCGGCGGCCTCGACAACTTGTGCTTT
CATTTATTATCGTCTTTGCCAATTTGGGGCTTGTCGCTGGGTTTGTTTAC
CCGGCGGCTTTCTCATCACTTGGCAGTTCTCCTGCTCTATCAAGACCACA
CACCTTCCGCCAGGCTATCGAGACCCCCGTCCCCTCCCCTTCCTCCTCCT
CCTCTACCTCTCCCTCCATTACCCCCATCCTCCGCGACACATTCGACTGT
ACCGGTTTCTTCTGTCCCTTTCGAACCTTTGGAGTGGAAGCACTCGTTCC
CTCCTCCTCTTTCTCTTCCTCCTCCTTTTCCTCCTCCCCACCTTCCTCAG
CTGCCAAACCCCTCCTCCTCTACCTCCCCGGTCTCGACGGCTCAGGCCTC
ACCGCCTTCGTTCAATACCCCGCATTGGCTGCAGAATTCGAGGTTCGCTG
TCTTACCATGCCCAACACCGATAGAAGCACTTTCATGGACCTCGTCCACC
TTGTCCGCACCGAGCTCCGTTCCTTCCCCCACCGGCAAGTCTTTCTCATG
GGTGAGTCCTTTGGCGGTCTCCTCGCTCTGGGGACAGCCCTCGAACGTAT
TAATCGCCCTGATGCCCGCGAAAGTACCACGGAGATTAAAGGCGTGGTAC
TAGTTAACCCCGCCACCTCCTATTCTAGAACGATCTGGGCGAAATTTGGC
CAAGCAATAACCAAGCTCCCAGAGCCCTTCTACGGACTCTCACTCCTCCC
GATTGGACTCCTCCTCGTCGATGCCGGACAGATTCAGAGCGTGATTAAAG
ATGCATTTGGTCGGCTGCGGGAAATCTCGTCGGTTTCGTCGCTTTCATCC
CCTCGTCCTTCGCCCCCTAATCCCGCGGACCAACGTGCTCGCATGGCAGC
CTTAGGTAAAAGAATAAATTTAGATGAATACATAAATACATAAATACATC
AGAAGACATGTGTGGAATCAAAAAGAGAGATGAGAATCTTGATATCCCCA
TTCTCCGAACCAAACTTGAAGAGGAACATTTGGCGGCGGTCCTTCTACTG
ACTCATATAGCACACACACATACACACACACACACACCCCTAATCCTCCC
TCACTTCCTCCCTTCCTCCTTCCCTTCCTTTCTCGTTTATTTTCCCTCTC
ACAGGACTGTCACCCTTTCAAATTGAGTTCTTCTCCGCAGCCCTCCCGGT
GCTCATTGAGCGATTGAACCTTCTACCCGCCCCGTGCCTGGAGTGGCGGC
TGTTGCAATGGCTAGGGGCGGGGTCAGAGATGGTCGAACCGCAGCTACAC
AGGCAAGAAATGGAATAGGGGTAGGGAAGGGGGGAGGGAGCCATGACGAG
TCAGGTGGAAGCCGCATTTTTGTTAGAATCGCATTGCGCCTTGTGTCTTC
TTGTCCTTACATTTTACAAAAATACACACATACACACACATACACACGTA
CACTCTTCTCTCTGCCAACGGCAGGATAAAAACCCCTGTGTTAGTAGTCG
CGGGGACGGTGGATCGCCTCTTGCCATCGTTTGAGGAAGCTAAACGTTTA
AAGAGAGAGTTGACTGATTGTCAAATTCATTTTGTGGAGGGGGCGGGGCA
TGGAGGCAGCCTGGATCAGCGGGTGCAGTTGCTGGAGATTCTCAAGGGTT
GGGCGCCAGTGGGGAGGGTTTTGGGATGATGAGATGCAAAGAAAGGAAAA
GGAGGAGAAGGGGGGGGAGCGCTTGTGTGAGGTTTGCTTTGTGGAAGACG
CGGGGCATGATGCAGCTTGAATCAGCTGCAGATTCGACAGCGGTGGAGGT
GGTTGCAAGAGATGAAGGCTGGTGAGAGAAAGCAGGGAAAGGGGAGATGG
ATAAAATGACAGCTGATCAGAGATAACGGACGTGTTAGGGTTAAGAGGAA
GGATAGAAGGCGTGGTTTGATTGATTTCGATTTTTTGTATTTGAGGATTT
TGGAGTGTGGAGATTGACAGAGAAGAAAAGAGGGTCACGTCCGTCGGAGC
AGTGATGGTTGTCGGTCGTCGACTGCAGGGTATAAAATGACGACGGACGT
GTTGAGGATAAATTGTGTGAATGGATAGGTAAAAAGCGCGTAATCTGTAC
ATTGGACCTAGGGTTATCGTCCTAGCATCCCCCCCGGAAAAAAAAATGAA
TGAATGAAAATAAGTTTGACAAGAACGAGTTGCGATTGGGCTAGTGCACG
CCTGTGTTTGAGGGCTTGCGGCCCATGGGGAAAGGGGTGAGCAATCCGTC
GCCTTCGGCATACGTGAACGAAT back to topprotein sequence of NO02G04860.4 >NO02G04860.4-protein ID=NO02G04860.4-protein|Name=NO02G04860.4|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MATPLVNFSCRRLSCCSEVVLPNSSLRRKLSRSSTMSHPLTVSTPLYATA
MYVPRYTQLRRRPRQLVLSFIIVFANLGLVAGFVYPAAFSSLGSSPALSR
PHTFRQAIETPVPSPSSSSSTSPSITPILRDTFDCTGFFCPFRTFGVEAL
VPSSSFSSSSFSSSPPSSAAKPLLLYLPGLDGSGLTAFVQYPALAAEFEV
RCLTMPNTDRSTFMDLVHLVRTELRSFPHRQVFLMGESFGGLLALGTALE
RINRPDARESTTEIKGVVLVNPATSYSRTIWAKFGQAITKLPEPFYGLSL
LPIGLLLVDAGQIQSVIKDAFGRLREISSVSSLSSPRPSPPNPADQRARM
AALGKRINLDEYINT* back to topmRNA from alignment at chr2:1312035..1314779- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G04860.4 ID=NO02G04860.4|Name=NO02G04860.4|organism=Nannochloropsis oceanica|type=mRNA|length=2745bp|location=Sequence derived from alignment at chr2:1312035..1314779- (Nannochloropsis oceanica)
AATTTGAATGTTTCGGTTCTGCTTTAAAAACAACAACCGTAAATTATCTA
GATGCATTTAGAAAAAAACAAAAAAACACGTCCGTACAAACCGAGCTGAG
GGTACCCTCCCGTCTCGTTCTGCATATATGTCTGATTCCCTTGCCGTCCA
GAGCGTCCACATCACATACCCACATACAATAACACGCACGTGGTCATGGC
AACCCCACTTGTGAACTTCTCATGCAGACGGCTTAGTTGCTGTTCTGAGG
TTGTACTTCCCAATTCGTCACTCCGAAGGAAGCTCTCGCGGTCTTCGACC
ATGTCTCATCCGCTCACTGTTTCCACACCTCTCTATGCCACAGCCATGTA
CGTTCCAAGGTACACACAACTACGGCGGCGGCCTCGACAACTTGTGCTTT
CATTTATTATCGTCTTTGCCAATTTGGGGCTTGTCGCTGGGTTTGTTTAC
CCGGCGGCTTTCTCATCACTTGGCAGTTCTCCTGCTCTATCAAGGTACGC
TGGTGACACCACCTGCAAGTGCCACAACGATGCTATGCTATCTACACCAT
TAGATGCTTACATATCACCCCCTTGCCTCCCTCATCCCTCATTATTATCA
CTCTCCCTTCACATAGACCACACACCTTCCGCCAGGCTATCGAGACCCCC
GTCCCCTCCCCTTCCTCCTCCTCCTCTACCTCTCCCTCCATTACCCCCAT
CCTCCGCGACACATTCGACTGTACCGGTTTCTTCTGTCCCTTTCGAACCT
TTGGAGTGGAAGCACTCGTTCCCTCCTCCTCTTTCTCTTCCTCCTCCTTT
TCCTCCTCCCCACCTTCCTCAGCTGCCAAACCCCTCCTCCTCTACCTCCC
CGGTCTCGACGGCTCAGGCCTCACCGCCTTCGTTCAATACCCCGCATTGG
CTGCAGAATTCGAGGTTCGCTGTCTTACCATGCCCAACACCGATAGAAGC
ACTTTCATGGACCTCGTCCACCTTGTCCGCACCGAGCTCCGTTCCTTCCC
CCACCGGCAAGTCTTTCTCATGGGTGAGTCCTTTGGCGGTCTCCTCGCTC
TGGGGACAGCCCTCGAACGTATTAATCGCCCTGATGCCCGCGAAAGTACC
ACGGAGATTAAAGGCGTGGTACTAGTTAACCCCGCCACCTCCTATTCTAG
AACGATCTGGGCGAAATTTGGCCAAGCAATAACCAAGCTCCCAGAGCCCT
TCTACGGACTCTCACTCCTCCCGATTGGACTCCTCCTCGTCGATGCCGGA
CAGATTCAGAGCGTGATTAAAGATGCATTTGGTCGGCTGCGGGAAATCTC
GTCGGTTTCGTCGCTTTCATCCCCTCGTCCTTCGCCCCCTAATCCCGCGG
ACCAACGTGCTCGCATGGCAGCCTTAGGTAAAAGAATAAATTTAGATGAA
TACATAAATACATAAATACATCAGAAGACATGTGTGGAATCAAAAAGAGA
GATGAGAATCTTGATATCCCCATTCTCCGAACCAAACTTGAAGAGGAACA
TTTGGCGGCGGTCCTTCTACTGACTCATATAGCACACACACATACACACA
CACACACACCCCTAATCCTCCCTCACTTCCTCCCTTCCTCCTTCCCTTCC
TTTCTCGTTTATTTTCCCTCTCACAGGACTGTCACCCTTTCAAATTGAGT
TCTTCTCCGCAGCCCTCCCGGTGCTCATTGAGCGATTGAACCTTCTACCC
GCCCCGTGCCTGGAGTGGCGGCTGTTGCAATGGCTAGGGGCGGGGTCAGA
GATGGTCGAACCGCAGCTACACAGGCAAGAAATGGAATAGGGGTAGGGAA
GGGGGGAGGGAGCCATGACGAGTCAGGTGGAAGCCGCATTTTTGTTAGAA
TCGCATTGCGCCTTGTGTCTTCTTGTCCTTACATTTTACAAAAATACACA
CATACACACACATACACACGTACACTCTTCTCTCTGCCAACGGCAGGATA
AAAACCCCTGTGTTAGTAGTCGCGGGGACGGTGGATCGCCTCTTGCCATC
GTTTGAGGAAGCTAAACGTTTAAAGAGAGAGTTGACTGATTGTCAAATTC
ATTTTGTGGAGGGGGCGGGGCATGGAGGCAGCCTGGATCAGCGGGTGCAG
TTGCTGGAGATTCTCAAGGGTTGGGCGCCAGTGGGGAGGGTTTTGGGATG
ATGAGATGCAAAGAAAGGAAAAGGAGGAGAAGGGGGGGGAGCGCTTGTGT
GAGGTTTGCTTTGTGGAAGACGCGGGGCATGATGCAGCTTGAATCAGCTG
CAGATTCGACAGCGGTGGAGGTGGTTGCAAGAGATGAAGGCTGGTGAGAG
AAAGCAGGGAAAGGGGAGATGGATAAAATGACAGCTGATCAGAGATAACG
GACGTGTTAGGGTTAAGAGGAAGGATAGAAGGCGTGGTTTGATTGATTTC
GATTTTTTGTATTTGAGGATTTTGGAGTGTGGAGATTGACAGAGAAGAAA
AGAGGGTCACGTCCGTCGGAGCAGTGATGGTTGTCGGTCGTCGACTGCAG
GGTATAAAATGACGACGGACGTGTTGAGGATAAATTGTGTGAATGGATAG
GTAAAAAGCGCGTAATCTGTACATTGGACCTAGGGTTATCGTCCTAGCAT
CCCCCCCGGAAAAAAAAATGAATGAATGAAAATAAGTTTGACAAGAACGA
GTTGCGATTGGGCTAGTGCACGCCTGTGTTTGAGGGCTTGCGGCCCATGG
GGAAAGGGGTGAGCAATCCGTCGCCTTCGGCATACGTGAACGAAT back to topCoding sequence (CDS) from alignment at chr2:1312035..1314779- >NO02G04860.4 ID=NO02G04860.4|Name=NO02G04860.4|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at chr2:1312035..1314779- (Nannochloropsis oceanica)
ATGGCAACCCCACTTGTGAACTTCTCATGCAGACGGCTTAGTTGCTGTTC
TGAGGTTGTACTTCCCAATTCGTCACTCCGAAGGAAGCTCTCGCGGTCTT
CGACCATGTCTCATCCGCTCACTGTTTCCACACCTCTCTATGCCACAGCC
ATGTACGTTCCAAGGTACACACAACTACGGCGGCGGCCTCGACAACTTGT
GCTTTCATTTATTATCGTCTTTGCCAATTTGGGGCTTGTCGCTGGGTTTG
TTTACCCGGCGGCTTTCTCATCACTTGGCAGTTCTCCTGCTCTATCAAGA
CCACACACCTTCCGCCAGGCTATCGAGACCCCCGTCCCCTCCCCTTCCTC
CTCCTCCTCTACCTCTCCCTCCATTACCCCCATCCTCCGCGACACATTCG
ACTGTACCGGTTTCTTCTGTCCCTTTCGAACCTTTGGAGTGGAAGCACTC
GTTCCCTCCTCCTCTTTCTCTTCCTCCTCCTTTTCCTCCTCCCCACCTTC
CTCAGCTGCCAAACCCCTCCTCCTCTACCTCCCCGGTCTCGACGGCTCAG
GCCTCACCGCCTTCGTTCAATACCCCGCATTGGCTGCAGAATTCGAGGTT
CGCTGTCTTACCATGCCCAACACCGATAGAAGCACTTTCATGGACCTCGT
CCACCTTGTCCGCACCGAGCTCCGTTCCTTCCCCCACCGGCAAGTCTTTC
TCATGGGTGAGTCCTTTGGCGGTCTCCTCGCTCTGGGGACAGCCCTCGAA
CGTATTAATCGCCCTGATGCCCGCGAAAGTACCACGGAGATTAAAGGCGT
GGTACTAGTTAACCCCGCCACCTCCTATTCTAGAACGATCTGGGCGAAAT
TTGGCCAAGCAATAACCAAGCTCCCAGAGCCCTTCTACGGACTCTCACTC
CTCCCGATTGGACTCCTCCTCGTCGATGCCGGACAGATTCAGAGCGTGAT
TAAAGATGCATTTGGTCGGCTGCGGGAAATCTCGTCGGTTTCGTCGCTTT
CATCCCCTCGTCCTTCGCCCCCTAATCCCGCGGACCAACGTGCTCGCATG
GCAGCCTTAGGTAAAAGAATAAATTTAGATGAATACATAAATACATAA back to top
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