NO02G04740.1, NO02G04740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04740.1
Unique NameNO02G04740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1605
Alignment locationchr2:1282157..1284108 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1282157..1284108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO02G04740.1 vs.
Match: CBN76649.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 380.2 bits (975), Expect = 1.100e-101
Identity = 236/531 (44.44%), Postives = 302/531 (56.87%), Query Frame = 0 
Query:    9 AFLDCKCGVAGDMLLGALLDAGAPRDQLVAGLKTILPLAEEWNLDVQNVVRSKGHIAATYIKVCSIYGHEEVSSGGSARTADAENLHQHSHNHDHEHKHTHAHLDSHEGGETHSHPHSHPHSHAHGHVHTHTPDHSGADHPHAALAGRCTRTHDDHSHYHTHAHGDIVHDHHHQHNGPLRNLDVIRDMIEAAEGLPESVRVQSIAVFTALAEAEAATHGVGIDEIHFHEVGAVDSIIDTVGSVFALHLLGVEEVYSSALPFGEGFTGETAHGILAVPTPATLRLMLGLPTTPGPKGAMGELVTPTGASLIKVLAEGRVGQPPIFVPELLGIGAGTKDFPGHANVVRVVIGR----------------RLEEGEEGREG--------EVVRRASFDAGGEEDG--MRLMSEPGCLDVWYTPAVMKKGRPGLTLHLLCEPATAPALLRCMFLETPTLGVRAHTVARLALERDFVMVPTRYGEVRAKIGRMDGVVVNVKPEYEDCRGAAMALGLPLRVVAEEAARVARGQMDDE 514
            A++DC  GVAGDMLL AL+DAGAP + +  GL TI P+  EW++++  V +  G IAA ++ V S Y H         R A   +   HS   DH H            G THSH HSH HSH H H HT       A H    +    T   D                     +GP+R+L  IR MI    GLP +V+ +S+ VFT L EAEA THG  +D++HFHEVGA+DSIIDTVG V+ALHLLG+E+VY SALP  EG T  TAHGIL VP PATLRLM+GLPT PGPK A GELVTP+GA+L++VL+    G+P +F P  +GIGAGTKDF  H N++RV++G                 R    +  RE          V+     D  GE  G  M ++ E GCLD W  P +MKKGRP  T+ +LCE       +R +F E+ TLGVR  +V R AL R  V V T +G+VR K+  +DGVVV+ KPEYEDC+  A   G+PL+ V ++A  V +  + +E
Sbjct:    4 AYIDCFSGVAGDMLLAALIDAGAPLEAIREGLGTIAPIKGEWDINLHRVTKGMGSIAAAHVNVTSKYQH---------RPAAPPSASPHS---DHSH------------GHTHSHGHSHDHSHGHSHGHTDNERDGQAQHRSEVVTPATTSPADATEGI---------------EDGPVRDLTTIRKMI-MESGLPPAVKERSVRVFTELGEAEAKTHGSTLDQVHFHEVGAIDSIIDTVGVVYALHLLGIEKVYCSALPLSEG-TVWTAHGILPVPAPATLRLMVGLPTCPGPKSAKGELVTPSGAALVRVLS-SEFGRPSLFTPGAIGIGAGTKDFDKHPNILRVILGEVPPPLPSEEPQPVEQIRASPADGARETGSWTTRQLSVLEANIDDMTGEAAGYLMEVLLEAGCLDAWLCPILMKKGRPAFTVSVLCEQHDQERFVRLLFTESSTLGVRRRSVERCALRRKTVPVSTTFGDVRVKVAWLDGVVVSTKPEYEDCKVLATNAGVPLQAVTDQARAVVQASLPEE 492
The following BLAST results are available for this feature:
BLAST of NO02G04740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN76649.11.100e-10144.44conserved unknown protein [Ectocarpus siliculosus][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04740NO02G04740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04740.1NO02G04740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04740.1.cds1NO02G04740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04740.1.cds2NO02G04740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04740.1.cds3NO02G04740.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04740.1 ID=NO02G04740.1|Name=NO02G04740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1605bp
ATGCCGACGCGGGGTAAGAAAGTGGCGTTCTTGGACTGCAAATGCGGCGT
TGCCGGGGACATGTTGCTGGGCGCATTGCTCGACGCGGGGGCTCCACGAG
ACCAGCTTGTCGCGGGCCTAAAGACTATTTTGCCGCTGGCGGAAGAATGG
AATTTGGACGTGCAAAATGTGGTGCGAAGCAAGGGGCACATAGCTGCGAC
CTACATCAAGGTCTGCTCCATCTACGGACATGAGGAAGTTTCTTCGGGTG
GTAGCGCGCGGACTGCAGATGCAGAGAATTTGCATCAACACAGCCACAAC
CACGACCACGAGCACAAGCATACACACGCCCACCTAGACAGCCACGAGGG
GGGGGAAACCCACAGCCATCCGCACTCGCACCCTCACTCCCACGCGCATG
GGCATGTCCACACCCACACGCCCGACCACAGCGGTGCGGATCATCCGCAC
GCTGCCCTCGCAGGACGTTGCACCCGTACGCATGATGATCACTCTCATTA
CCACACCCATGCTCACGGAGACATTGTCCACGACCACCATCATCAACACA
ACGGCCCGCTTCGCAACCTCGATGTTATCCGCGACATGATCGAAGCCGCT
GAAGGACTCCCGGAGTCGGTCCGTGTACAAAGTATTGCCGTTTTTACCGC
GTTGGCAGAAGCAGAGGCAGCGACACATGGAGTGGGTATCGACGAGATCC
ATTTTCATGAAGTTGGCGCAGTAGACAGCATCATTGACACAGTCGGTTCC
GTCTTTGCCTTACATCTGCTCGGTGTTGAGGAGGTGTATTCCTCCGCCTT
GCCCTTTGGCGAGGGCTTCACCGGAGAGACAGCCCACGGGATCTTGGCTG
TCCCTACCCCTGCCACCCTGCGGCTCATGCTCGGCTTGCCTACCACCCCG
GGTCCGAAGGGAGCGATGGGCGAGCTCGTCACACCAACAGGGGCGTCTTT
GATCAAGGTTTTGGCTGAGGGGAGAGTAGGACAGCCCCCGATTTTTGTAC
CTGAGTTGTTGGGGATCGGAGCGGGGACAAAGGATTTTCCGGGCCATGCG
AATGTGGTGAGGGTGGTGATTGGAAGGAGGCTGGAGGAAGGGGAGGAGGG
ACGTGAGGGAGAGGTGGTCCGACGGGCGTCCTTTGATGCTGGGGGGGAGG
AGGATGGGATGCGGTTAATGTCTGAGCCAGGCTGCCTCGACGTCTGGTAC
ACGCCCGCCGTTATGAAAAAAGGCCGCCCGGGCCTGACCCTCCACCTTTT
GTGTGAACCGGCCACTGCCCCTGCTCTCTTGCGGTGCATGTTCTTGGAGA
CCCCCACCCTTGGGGTGAGGGCACATACCGTGGCGAGGTTGGCGCTGGAG
AGGGATTTCGTGATGGTGCCCACAAGATATGGAGAGGTGCGGGCTAAAAT
AGGTCGGATGGACGGGGTGGTGGTGAATGTGAAACCGGAGTACGAAGATT
GTAGGGGCGCCGCCATGGCGTTGGGCTTGCCCCTGAGGGTGGTGGCGGAA
GAGGCGGCAAGGGTAGCACGAGGACAGATGGATGATGAGGGAGGGAAGGA
GGGAGGGAAGGAGGGGAGGATAGAGGAGGAGGGCCAGGGGGAGAAGGGGA
AGTGA
back to top

protein sequence of NO02G04740.1

>NO02G04740.1-protein ID=NO02G04740.1-protein|Name=NO02G04740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=535bp
MPTRGKKVAFLDCKCGVAGDMLLGALLDAGAPRDQLVAGLKTILPLAEEW
NLDVQNVVRSKGHIAATYIKVCSIYGHEEVSSGGSARTADAENLHQHSHN
HDHEHKHTHAHLDSHEGGETHSHPHSHPHSHAHGHVHTHTPDHSGADHPH
AALAGRCTRTHDDHSHYHTHAHGDIVHDHHHQHNGPLRNLDVIRDMIEAA
EGLPESVRVQSIAVFTALAEAEAATHGVGIDEIHFHEVGAVDSIIDTVGS
VFALHLLGVEEVYSSALPFGEGFTGETAHGILAVPTPATLRLMLGLPTTP
GPKGAMGELVTPTGASLIKVLAEGRVGQPPIFVPELLGIGAGTKDFPGHA
NVVRVVIGRRLEEGEEGREGEVVRRASFDAGGEEDGMRLMSEPGCLDVWY
TPAVMKKGRPGLTLHLLCEPATAPALLRCMFLETPTLGVRAHTVARLALE
RDFVMVPTRYGEVRAKIGRMDGVVVNVKPEYEDCRGAAMALGLPLRVVAE
EAARVARGQMDDEGGKEGGKEGRIEEEGQGEKGK*
back to top

mRNA from alignment at chr2:1282157..1284108+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04740.1 ID=NO02G04740.1|Name=NO02G04740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1952bp|location=Sequence derived from alignment at chr2:1282157..1284108+ (Nannochloropsis oceanica)
ATGCCGACGCGGGGTAAGAAAGTGGCGTTCTTGGACTGCAAATGCGGCGT
TGCCGGGGACATGTTGCTGGGCGCATTGCTCGACGCGGTAAGGGAACTTG
CCTGCATCGTCGTAGAATGTTCGGTGTGCCTTCAATGTCCTTCACGACCA
CAACATCCACACCCACGCACACATTGATAGGGGGCTCCACGAGACCAGCT
TGTCGCGGGCCTAAAGACTATTTTGCCGCTGGCGGAAGAATGGAATTTGG
ACGTGCAAAATGTGGTGCGAAGCAAGGGGCACATAGCTGCGACCTACATC
AAGGTCTGCTCCATCTACGGACATGAGGAAGTTTCTTCGGGTGGTAGCGC
GCGGACTGCAGATGCAGAGAATTTGCATCAACACAGCCACAACCACGACC
ACGAGCACAAGCATACACACGCCCACCTAGACAGCCACGAGGGGGGGGAA
ACCCACAGCCATCCGCACTCGCACCCTCACTCCCACGCGCATGGGCATGT
CCACACCCACACGCCCGACCACAGCGGTGCGGATCATCCGCACGCTGCCC
TCGCAGGACGTTGCACCCGTACGCATGATGATCACTCTCATTACCACACC
CATGCTCACGGAGACATTGTCCACGACCACCATCATCAACACAACGGCCC
GCTTCGCAACCTCGATGTTATCCGCGACATGATCGAAGCCGCTGAAGGAC
TCCCGGAGTCGGTCCGTGTACAAAGTATTGCCGTTTTTACCGCGTTGGCA
GAAGCAGAGGCAGCGACACATGGAGTGGGTATCGACGAGATCCATTTTCA
TGAAGTTGGCGCAGTAGACAGCATCATTGACACAGTCGGTTCCGTCTTTG
CCTTACATCTGCTCGGTGTTGAGGAGGTGTATTCCTCCGCCTTGCCCTTT
GGCGAGGGCTTCACCGGAGAGACAGCCCACGGGATCTTGGCTGTCCCTAC
CCCTGCCACCCTGCGGCTCATGCTCGGCTTGCCTACCACCCCGGGTCCGA
AGGGAGCGATGGGCGAGCTCGTCACACCAACAGGGGCGTCTTTGATCAAG
GTTTTGGCTGAGGGGAGAGTAGGACAGCCCCCGATTTTTGTACCTGAGTT
GTTGGGGATCGGAGCGGGGACAAAGGATTTTCCGGGCCATGCGAATGTGG
TGAGGGTGGTGATTGGAAGGAGGCTGGAGGAAGGGGAGGAGGGACGTGAG
GGAGAGGTGGTCCGACGGGCGTCCTTTGATGCTGGGGGGGAGGAGGATGG
GATGGTACCCCGCACCCGTCGTCAGCAGCAGCACCCTCAATCACCTCTTC
GTTACCTCTCCGAAAAAGGGGAGCCTTCCCATCCAATCACCCGCCCTCCC
GCCCTCCACCCCCTACCACCCACACCACACACACACATGCAATCCCACCT
TCCTCGGGCTCTGCCTGGTCTTCCGGAGGATGGGAAGAACGGCACTTGTG
TGAATTGGAGGCCAACTTGGACGATATGACGCCCGAAACTGCCTCTTTTG
CCCTCGAGCGGTTAATGTCTGAGCCAGGCTGCCTCGACGTCTGGTACACG
CCCGCCGTTATGAAAAAAGGCCGCCCGGGCCTGACCCTCCACCTTTTGTG
TGAACCGGCCACTGCCCCTGCTCTCTTGCGGTGCATGTTCTTGGAGACCC
CCACCCTTGGGGTGAGGGCACATACCGTGGCGAGGTTGGCGCTGGAGAGG
GATTTCGTGATGGTGCCCACAAGATATGGAGAGGTGCGGGCTAAAATAGG
TCGGATGGACGGGGTGGTGGTGAATGTGAAACCGGAGTACGAAGATTGTA
GGGGCGCCGCCATGGCGTTGGGCTTGCCCCTGAGGGTGGTGGCGGAAGAG
GCGGCAAGGGTAGCACGAGGACAGATGGATGATGAGGGAGGGAAGGAGGG
AGGGAAGGAGGGGAGGATAGAGGAGGAGGGCCAGGGGGAGAAGGGGAAGT
GA
back to top

Coding sequence (CDS) from alignment at chr2:1282157..1284108+

>NO02G04740.1 ID=NO02G04740.1|Name=NO02G04740.1|organism=Nannochloropsis oceanica|type=CDS|length=1605bp|location=Sequence derived from alignment at chr2:1282157..1284108+ (Nannochloropsis oceanica)
ATGCCGACGCGGGGTAAGAAAGTGGCGTTCTTGGACTGCAAATGCGGCGT
TGCCGGGGACATGTTGCTGGGCGCATTGCTCGACGCGGGGGCTCCACGAG
ACCAGCTTGTCGCGGGCCTAAAGACTATTTTGCCGCTGGCGGAAGAATGG
AATTTGGACGTGCAAAATGTGGTGCGAAGCAAGGGGCACATAGCTGCGAC
CTACATCAAGGTCTGCTCCATCTACGGACATGAGGAAGTTTCTTCGGGTG
GTAGCGCGCGGACTGCAGATGCAGAGAATTTGCATCAACACAGCCACAAC
CACGACCACGAGCACAAGCATACACACGCCCACCTAGACAGCCACGAGGG
GGGGGAAACCCACAGCCATCCGCACTCGCACCCTCACTCCCACGCGCATG
GGCATGTCCACACCCACACGCCCGACCACAGCGGTGCGGATCATCCGCAC
GCTGCCCTCGCAGGACGTTGCACCCGTACGCATGATGATCACTCTCATTA
CCACACCCATGCTCACGGAGACATTGTCCACGACCACCATCATCAACACA
ACGGCCCGCTTCGCAACCTCGATGTTATCCGCGACATGATCGAAGCCGCT
GAAGGACTCCCGGAGTCGGTCCGTGTACAAAGTATTGCCGTTTTTACCGC
GTTGGCAGAAGCAGAGGCAGCGACACATGGAGTGGGTATCGACGAGATCC
ATTTTCATGAAGTTGGCGCAGTAGACAGCATCATTGACACAGTCGGTTCC
GTCTTTGCCTTACATCTGCTCGGTGTTGAGGAGGTGTATTCCTCCGCCTT
GCCCTTTGGCGAGGGCTTCACCGGAGAGACAGCCCACGGGATCTTGGCTG
TCCCTACCCCTGCCACCCTGCGGCTCATGCTCGGCTTGCCTACCACCCCG
GGTCCGAAGGGAGCGATGGGCGAGCTCGTCACACCAACAGGGGCGTCTTT
GATCAAGGTTTTGGCTGAGGGGAGAGTAGGACAGCCCCCGATTTTTGTAC
CTGAGTTGTTGGGGATCGGAGCGGGGACAAAGGATTTTCCGGGCCATGCG
AATGTGGTGAGGGTGGTGATTGGAAGGAGGCTGGAGGAAGGGGAGGAGGG
ACGTGAGGGAGAGGTGGTCCGACGGGCGTCCTTTGATGCTGGGGGGGAGG
AGGATGGGATGCGGTTAATGTCTGAGCCAGGCTGCCTCGACGTCTGGTAC
ACGCCCGCCGTTATGAAAAAAGGCCGCCCGGGCCTGACCCTCCACCTTTT
GTGTGAACCGGCCACTGCCCCTGCTCTCTTGCGGTGCATGTTCTTGGAGA
CCCCCACCCTTGGGGTGAGGGCACATACCGTGGCGAGGTTGGCGCTGGAG
AGGGATTTCGTGATGGTGCCCACAAGATATGGAGAGGTGCGGGCTAAAAT
AGGTCGGATGGACGGGGTGGTGGTGAATGTGAAACCGGAGTACGAAGATT
GTAGGGGCGCCGCCATGGCGTTGGGCTTGCCCCTGAGGGTGGTGGCGGAA
GAGGCGGCAAGGGTAGCACGAGGACAGATGGATGATGAGGGAGGGAAGGA
GGGAGGGAAGGAGGGGAGGATAGAGGAGGAGGGCCAGGGGGAGAAGGGGA
AGTGA
back to top
Synonyms
Publications